Wall clock time and date at job start Tue Mar 31 2020 14:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00268 * 2 1 4 4 H 1.48496 * 109.47294 * 272.94768 * 3 2 1 5 5 H 1.48503 * 109.46840 * 32.94502 * 3 2 1 6 6 H 1.48506 * 109.47023 * 152.94704 * 3 2 1 7 7 C 1.38822 * 119.99659 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99880 * 339.34258 * 7 2 1 9 9 N 1.36930 * 119.99574 * 159.34077 * 7 2 1 10 10 C 1.46927 * 120.63681 * 332.63140 * 9 7 2 11 11 C 1.53201 * 108.77393 * 233.59024 * 10 9 7 12 12 C 1.53037 * 109.30948 * 305.35845 * 11 10 9 13 13 N 1.46497 * 109.46113 * 181.38849 * 12 11 10 14 14 C 1.34778 * 120.00414 * 154.97549 * 13 12 11 15 15 O 1.21585 * 119.99626 * 359.97438 * 14 13 12 16 16 N 1.34778 * 120.00095 * 180.02562 * 14 13 12 17 17 N 1.40098 * 119.99777 * 359.97438 * 16 14 13 18 18 C 1.39148 * 119.99709 * 179.97438 * 17 16 14 19 19 C 1.39106 * 119.67814 * 180.02562 * 18 17 16 20 20 C 1.38310 * 119.12126 * 179.97438 * 19 18 17 21 21 C 1.39038 * 118.48613 * 359.97438 * 20 19 18 22 22 F 1.35105 * 120.36285 * 179.97438 * 21 20 19 23 23 C 1.38220 * 119.28024 * 359.97438 * 21 20 19 24 24 N 1.31990 * 120.82538 * 0.02562 * 23 21 20 25 25 C 1.53042 * 109.52691 * 61.37623 * 12 11 10 26 26 C 1.46923 * 120.62784 * 152.60686 * 9 7 2 27 27 H 0.96998 * 119.99746 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.59253 * 113.80014 * 10 9 7 29 29 H 1.09002 * 109.70228 * 353.43998 * 10 9 7 30 30 H 1.08994 * 109.49263 * 185.40909 * 11 10 9 31 31 H 1.08995 * 109.49736 * 65.31472 * 11 10 9 32 32 H 1.08995 * 109.46438 * 301.35944 * 12 11 10 33 33 H 0.97004 * 119.99712 * 334.97064 * 13 12 11 34 34 H 0.96992 * 119.99917 * 179.97438 * 16 14 13 35 35 H 0.96998 * 120.00738 * 0.02562 * 17 16 14 36 36 H 1.08000 * 120.43821 * 0.27309 * 19 18 17 37 37 H 1.07997 * 120.75787 * 180.02562 * 20 19 18 38 38 H 1.08004 * 119.58411 * 179.97438 * 23 21 20 39 39 H 1.09000 * 109.49726 * 58.57863 * 25 12 11 40 40 H 1.09006 * 109.50041 * 178.67540 * 25 12 11 41 41 H 1.09000 * 109.58994 * 246.19723 * 26 9 7 42 42 H 1.09002 * 109.59003 * 6.48072 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4355 2.0824 -1.3982 5 1 1.4803 2.6338 0.7614 6 1 3.5777 1.4228 0.6368 7 6 2.0103 -1.2023 -0.0005 8 1 1.5223 -2.1075 0.3290 9 7 3.3135 -1.2402 -0.4190 10 6 3.8173 -0.2585 -1.3891 11 6 4.4621 -1.0079 -2.5594 12 6 5.5288 -1.9644 -2.0216 13 7 6.1706 -2.6587 -3.1406 14 6 7.4212 -3.1427 -3.0054 15 8 8.0169 -3.0026 -1.9548 16 7 8.0118 -3.7810 -4.0351 17 7 7.3255 -3.9419 -5.2458 18 6 7.9354 -4.6004 -6.3091 19 6 7.2480 -4.7560 -7.5084 20 6 7.8655 -5.4120 -8.5579 21 6 9.1569 -5.8925 -8.3718 22 9 9.7955 -6.5393 -9.3713 23 6 9.7802 -5.7011 -7.1530 24 7 9.1648 -5.0709 -6.1701 25 6 4.8748 -2.9901 -1.0929 26 6 4.2349 -2.2631 0.0941 27 1 -0.4850 0.8400 0.0004 28 1 4.5597 0.3802 -0.9108 29 1 2.9923 0.3520 -1.7563 30 1 4.9245 -0.2922 -3.2391 31 1 3.6994 -1.5758 -3.0921 32 1 6.2779 -1.3987 -1.4677 33 1 5.6954 -2.7702 -3.9789 34 1 8.9119 -4.1290 -3.9379 35 1 6.4254 -3.5936 -5.3432 36 1 6.2474 -4.3655 -7.6202 37 1 7.3565 -5.5472 -9.5008 38 1 10.7832 -6.0727 -7.0029 39 1 4.1082 -3.5392 -1.6396 40 1 5.6311 -3.6854 -0.7286 41 1 5.0115 -1.7879 0.6935 42 1 3.6844 -2.9759 0.7082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731363469.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:23 Heat of formation + Delta-G solvation = 14.635585 kcal Electronic energy + Delta-G solvation = -26551.811120 eV Core-core repulsion = 22483.050619 eV Total energy + Delta-G solvation = -4068.760501 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.77057 -41.66491 -40.94384 -39.33607 -37.41379 -36.11634 -34.06242 -33.51730 -33.01672 -31.97120 -31.46463 -29.24850 -26.84377 -25.07015 -24.54560 -23.91889 -23.68074 -22.05827 -21.32767 -20.10345 -19.69586 -18.76383 -18.44168 -17.89839 -17.48335 -17.02239 -16.78388 -16.55145 -16.27377 -15.93509 -15.69010 -15.34501 -15.32420 -15.14729 -14.79987 -14.71466 -14.50859 -14.36024 -14.24297 -13.81761 -13.48326 -13.47029 -12.83722 -12.58307 -12.55354 -12.27593 -12.02141 -11.82136 -11.64047 -11.55903 -11.32007 -10.94344 -10.70915 -10.68541 -10.50632 -10.07897 -8.95758 -8.49710 -8.14878 -5.47145 0.05161 0.17614 0.84730 1.30475 1.44904 1.53105 1.84732 1.96478 2.42675 2.67556 3.04512 3.07418 3.26922 3.33918 3.74386 3.80361 3.86245 3.97910 3.99235 4.22405 4.30944 4.33088 4.49704 4.62642 4.63652 4.71755 4.85049 4.90616 4.94553 5.00793 5.03256 5.08347 5.17501 5.19414 5.39047 5.44086 5.63129 5.87866 5.89921 6.14332 6.21450 6.74245 6.92060 7.15940 7.39270 7.62668 8.02940 9.04862 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.027416 B = 0.002264 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.058375 B =12365.277416 C =12804.613693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.034 4.034 3 Si 0.944 3.056 4 H -0.267 1.267 5 H -0.313 1.313 6 H -0.266 1.266 7 C -0.247 4.247 8 H 0.053 0.947 9 N -0.618 5.618 10 C 0.120 3.880 11 C -0.127 4.127 12 C 0.178 3.822 13 N -0.721 5.721 14 C 0.711 3.289 15 O -0.616 6.616 16 N -0.522 5.522 17 N -0.515 5.515 18 C 0.383 3.617 19 C -0.190 4.190 20 C -0.056 4.056 21 C -0.025 4.025 22 F -0.142 7.142 23 C 0.121 3.879 24 N -0.544 5.544 25 C -0.129 4.129 26 C 0.146 3.854 27 H 0.262 0.738 28 H 0.032 0.968 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.405 0.595 34 H 0.440 0.560 35 H 0.443 0.557 36 H 0.178 0.822 37 H 0.176 0.824 38 H 0.182 0.818 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.029 0.971 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.782 -10.124 -21.256 29.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.229 4.229 3 Si 0.773 3.227 4 H -0.193 1.193 5 H -0.243 1.243 6 H -0.190 1.190 7 C -0.377 4.377 8 H 0.071 0.929 9 N -0.343 5.343 10 C -0.005 4.005 11 C -0.166 4.166 12 C 0.072 3.928 13 N -0.378 5.378 14 C 0.411 3.589 15 O -0.493 6.493 16 N -0.275 5.275 17 N -0.251 5.251 18 C 0.147 3.853 19 C -0.215 4.215 20 C -0.082 4.082 21 C -0.049 4.049 22 F -0.122 7.122 23 C -0.037 4.037 24 N -0.262 5.262 25 C -0.169 4.169 26 C 0.021 3.979 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.242 0.758 34 H 0.286 0.714 35 H 0.289 0.711 36 H 0.196 0.804 37 H 0.193 0.807 38 H 0.199 0.801 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.047 0.953 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 18.458 -9.734 -19.501 28.561 hybrid contribution -0.516 0.467 -0.802 1.062 sum 17.942 -9.267 -20.303 28.635 Atomic orbital electron populations 1.69961 1.07366 1.27209 1.55654 1.25894 0.95823 1.00831 1.00350 0.85959 0.78535 0.80301 0.77909 1.19302 1.24264 1.19035 1.18850 0.86571 0.93569 1.38674 0.92949 1.44509 1.07729 1.34466 1.47607 1.21385 0.96952 0.92055 0.90137 1.22170 0.97460 0.98731 0.98266 1.20606 0.93561 0.92230 0.86369 1.45072 1.14021 1.61069 1.17624 1.15766 0.82071 0.78706 0.82405 1.91009 1.65744 1.65336 1.27206 1.44308 1.17998 1.62023 1.03219 1.43139 1.16368 1.63319 1.02261 1.18501 0.89633 0.90755 0.86406 1.21406 1.03694 1.05814 0.90590 1.21699 0.92208 0.93449 1.00842 1.18633 0.94359 1.04114 0.87841 1.91490 1.81688 1.79604 1.59371 1.22728 1.00500 0.93765 0.86673 1.67055 1.09687 1.16064 1.33433 1.22228 0.99287 0.98017 0.97394 1.21013 0.91805 0.90717 0.94396 0.92941 0.95043 0.92220 0.88979 0.90455 0.91038 0.75789 0.71419 0.71054 0.80417 0.80680 0.80114 0.91668 0.91761 0.95298 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.86 13.97 21.66 0.30 -58.56 16 2 C -0.03 -1.95 5.23 84.86 0.44 -1.51 16 3 Si 0.94 45.33 24.34 68.60 1.67 47.00 16 4 H -0.27 -11.74 6.62 99.48 0.66 -11.08 16 5 H -0.31 -15.50 7.11 99.48 0.71 -14.79 16 6 H -0.27 -12.43 6.63 99.48 0.66 -11.77 16 7 C -0.25 -13.67 10.04 84.04 0.84 -12.83 16 8 H 0.05 3.18 8.05 -2.92 -0.02 3.16 16 9 N -0.62 -28.06 2.77 -699.08 -1.94 -29.99 16 10 C 0.12 4.72 4.20 86.37 0.36 5.08 16 11 C -0.13 -3.59 5.55 30.67 0.17 -3.42 16 12 C 0.18 4.97 2.42 45.02 0.11 5.08 16 13 N -0.72 -15.30 5.04 -457.70 -2.31 -17.60 16 14 C 0.71 17.82 8.64 179.05 1.55 19.37 16 15 O -0.62 -21.12 16.84 -3.98 -0.07 -21.19 16 16 N -0.52 -10.04 6.29 -184.75 -1.16 -11.20 16 17 N -0.52 -6.58 6.42 -55.38 -0.36 -6.94 16 18 C 0.38 5.04 7.59 133.02 1.01 6.06 16 19 C -0.19 -1.47 9.94 22.50 0.22 -1.24 16 20 C -0.06 -0.46 10.15 22.48 0.23 -0.23 16 21 C -0.03 -0.31 7.34 22.46 0.16 -0.15 16 22 F -0.14 -2.04 17.28 44.97 0.78 -1.26 16 23 C 0.12 1.62 11.16 84.66 0.94 2.56 16 24 N -0.54 -8.78 9.37 -193.03 -1.81 -10.58 16 25 C -0.13 -4.05 5.65 30.67 0.17 -3.88 16 26 C 0.15 5.65 6.52 86.36 0.56 6.21 16 27 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 28 H 0.03 1.23 7.07 -2.39 -0.02 1.21 16 29 H 0.06 2.57 4.50 -2.39 -0.01 2.56 16 30 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.07 2.29 7.57 -2.39 -0.02 2.28 16 33 H 0.41 5.68 6.52 -92.71 -0.60 5.07 16 34 H 0.44 8.98 8.05 -213.33 -1.72 7.26 16 35 H 0.44 3.28 6.70 -213.32 -1.43 1.85 16 36 H 0.18 0.20 8.06 -2.91 -0.02 0.18 16 37 H 0.18 0.51 8.06 -2.91 -0.02 0.48 16 38 H 0.18 1.69 8.06 -2.91 -0.02 1.66 16 39 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 41 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.06 2.30 7.93 -2.39 -0.02 2.28 16 Total: -1.00 -74.22 346.71 -0.85 -75.08 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -2.75 Total: 14.15 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: 6.78 Total: 21.10 kcal Atomic # 7 Polarization: -127.61 SS G_CDS: -7.27 Total: -134.88 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.07 Total: -21.19 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.78 Total: -1.26 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.67 Total: 47.00 kcal Total: -74.22 -0.85 -75.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731363469.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.712 kcal (2) G-P(sol) polarization free energy of solvation -74.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds