Wall clock time and date at job start Tue Mar 31 2020 14:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99491 * 2 1 4 4 H 1.48503 * 109.47026 * 269.99644 * 3 2 1 5 5 H 1.48491 * 109.47434 * 29.99874 * 3 2 1 6 6 H 1.48500 * 109.46940 * 150.00043 * 3 2 1 7 7 C 1.38809 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99811 * 159.31961 * 7 2 1 9 9 N 1.36936 * 120.00413 * 339.30966 * 7 2 1 10 10 C 1.46502 * 119.99681 * 321.42194 * 9 7 2 11 11 C 1.50700 * 109.46890 * 269.99381 * 10 9 7 12 12 N 1.29948 * 126.29030 * 90.02673 * 11 10 9 13 13 O 1.21298 * 110.25353 * 179.97438 * 12 11 10 14 14 C 1.33642 * 109.81153 * 0.02562 * 13 12 11 15 15 C 1.50697 * 126.54896 * 180.02562 * 14 13 12 16 16 C 1.53003 * 109.47089 * 269.97007 * 15 14 13 17 17 C 1.52997 * 109.47171 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.47261 * 180.02562 * 17 16 15 19 19 O 1.20836 * 119.99995 * 359.97438 * 18 17 16 20 20 O 1.34225 * 120.00713 * 179.97438 * 18 17 16 21 21 N 1.31135 * 106.89811 * 359.76922 * 14 13 12 22 22 C 1.46497 * 120.00111 * 141.41186 * 9 7 2 23 23 C 1.55240 * 110.46472 * 59.40518 * 22 9 7 24 24 C 1.54888 * 102.58559 * 203.39158 * 23 22 9 25 25 C 1.54274 * 104.31421 * 37.93224 * 24 23 22 26 26 C 1.53872 * 106.59630 * 336.32421 * 25 24 23 27 27 H 0.96998 * 120.00128 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47247 * 29.99571 * 10 9 7 29 29 H 1.09003 * 109.47170 * 149.99458 * 10 9 7 30 30 H 1.08998 * 109.47509 * 29.97523 * 15 14 13 31 31 H 1.08997 * 109.47053 * 149.97917 * 15 14 13 32 32 H 1.08998 * 109.47366 * 300.00604 * 16 15 14 33 33 H 1.09001 * 109.46906 * 60.00501 * 16 15 14 34 34 H 1.09003 * 109.46924 * 300.00162 * 17 16 15 35 35 H 1.08997 * 109.47645 * 60.00522 * 17 16 15 36 36 H 0.96691 * 117.00552 * 179.97438 * 20 18 17 37 37 H 1.08998 * 110.43268 * 182.05116 * 22 9 7 38 38 H 1.08998 * 110.90038 * 85.10153 * 23 22 9 39 39 H 1.09006 * 110.76525 * 321.61915 * 23 22 9 40 40 H 1.08992 * 110.48916 * 279.18776 * 24 23 22 41 41 H 1.09007 * 110.48450 * 156.67280 * 24 23 22 42 42 H 1.08997 * 110.03125 * 95.60599 * 25 24 23 43 43 H 1.08993 * 110.03113 * 216.98823 * 25 24 23 44 44 H 1.08995 * 110.03411 * 119.28687 * 26 25 24 45 45 H 1.09004 * 110.03091 * 240.66757 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0381 -1.2320 -0.3309 9 7 1.3920 -2.3500 0.4179 10 6 0.4720 -2.3128 1.5575 11 6 1.2390 -2.5615 2.8306 12 7 1.7965 -1.6593 3.5814 13 8 2.3363 -2.1810 4.5342 14 6 2.1698 -3.5058 4.4798 15 6 2.6845 -4.5165 5.4720 16 6 4.0795 -4.9815 5.0494 17 6 4.6018 -6.0080 6.0564 18 6 5.9762 -6.4655 5.6405 19 8 6.4855 -6.0169 4.6408 20 8 6.6346 -7.3714 6.3805 21 7 1.4682 -3.7578 3.4009 22 6 1.6502 -3.6152 -0.2740 23 6 3.1611 -3.9670 -0.2160 24 6 3.3360 -4.9063 -1.4350 25 6 2.4222 -4.2984 -2.5192 26 6 1.3504 -3.4775 -1.7810 27 1 -0.4850 0.8400 -0.0004 28 1 -0.0062 -1.3345 1.6066 29 1 -0.2891 -3.0835 1.4353 30 1 2.7374 -4.0607 6.4607 31 1 2.0100 -5.3722 5.5020 32 1 4.0266 -5.4373 4.0607 33 1 4.7541 -4.1258 5.0194 34 1 4.6547 -5.5525 7.0453 35 1 3.9273 -6.8637 6.0861 36 1 7.5130 -7.6342 6.0735 37 1 1.0533 -4.4162 0.1621 38 1 3.4040 -4.4872 0.7105 39 1 3.7712 -3.0706 -0.3284 40 1 3.0130 -5.9173 -1.1870 41 1 4.3737 -4.9093 -1.7686 42 1 3.0023 -3.6502 -3.1760 43 1 1.9518 -5.0924 -3.0991 44 1 1.4103 -2.4309 -2.0795 45 1 0.3590 -3.8725 -2.0028 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739085967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:44 Heat of formation + Delta-G solvation = -25.463332 kcal Electronic energy + Delta-G solvation = -27905.343985 eV Core-core repulsion = 23926.012219 eV Total energy + Delta-G solvation = -3979.331767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.79984 -40.50511 -37.70817 -36.62492 -35.72706 -35.27189 -33.98106 -31.91948 -30.98003 -28.63050 -27.82777 -27.45171 -26.08853 -24.06023 -23.35787 -22.17807 -21.05343 -20.43075 -19.80472 -19.10818 -18.34167 -17.38415 -17.16407 -16.67155 -16.52585 -16.08992 -15.43641 -14.99433 -14.84679 -14.51286 -14.21750 -13.48618 -13.40559 -13.27997 -12.97511 -12.77793 -12.60337 -12.50969 -11.94732 -11.80392 -11.62610 -11.39490 -11.30690 -11.02341 -10.98445 -10.86701 -10.81396 -10.69524 -10.53150 -10.42543 -10.34775 -10.27092 -10.10113 -10.00071 -9.71554 -9.48249 -9.09220 -8.50664 -6.66398 -5.88529 -3.45409 1.82028 1.93924 2.70566 3.07284 3.36526 3.37895 3.43890 3.49822 4.24566 4.46080 4.51809 4.65974 4.74202 4.99459 5.11545 5.17787 5.26842 5.29605 5.31982 5.33323 5.45425 5.52784 5.76264 5.79950 5.85158 6.00784 6.21082 6.22617 6.25406 6.28631 6.40459 6.51623 6.54403 6.58032 6.64442 6.69472 6.83515 6.87053 7.06903 7.15792 7.33752 7.42935 7.60279 7.81716 8.45930 9.03467 9.09789 9.72522 10.29838 11.14035 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011427 B = 0.003786 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.643418 B = 7394.534402 C = 8587.336613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.022 3.978 3 Si 0.896 3.104 4 H -0.285 1.285 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.257 4.257 8 H 0.061 0.939 9 N -0.559 5.559 10 C 0.223 3.777 11 C 0.176 3.824 12 N -0.376 5.376 13 O 0.062 5.938 14 C 0.140 3.860 15 C -0.016 4.016 16 C -0.110 4.110 17 C -0.110 4.110 18 C 0.475 3.525 19 O -0.509 6.509 20 O -0.521 6.521 21 N -0.476 5.476 22 C 0.174 3.826 23 C -0.133 4.133 24 C -0.121 4.121 25 C -0.119 4.119 26 C -0.131 4.131 27 H 0.257 0.743 28 H 0.119 0.881 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.410 0.590 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.049 0.951 44 H 0.085 0.915 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.519 -14.046 11.851 19.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.179 4.179 3 Si 0.725 3.275 4 H -0.212 1.212 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.387 4.387 8 H 0.079 0.921 9 N -0.277 5.277 10 C 0.093 3.907 11 C -0.099 4.099 12 N -0.085 5.085 13 O 0.006 5.994 14 C -0.081 4.081 15 C -0.055 4.055 16 C -0.149 4.149 17 C -0.148 4.148 18 C 0.318 3.682 19 O -0.397 6.397 20 O -0.333 6.333 21 N -0.211 5.211 22 C 0.067 3.933 23 C -0.173 4.173 24 C -0.159 4.159 25 C -0.157 4.157 26 C -0.170 4.170 27 H 0.067 0.933 28 H 0.136 0.864 29 H 0.076 0.924 30 H 0.116 0.884 31 H 0.124 0.876 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.269 0.731 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.103 0.897 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.865 -13.021 11.196 18.147 hybrid contribution 1.281 0.628 -0.058 1.428 sum 7.146 -12.393 11.138 18.130 Atomic orbital electron populations 1.69940 1.05594 1.26119 1.50871 1.25170 0.94987 0.98788 0.98931 0.86407 0.79820 0.83560 0.77687 1.21172 1.21331 1.20247 1.18849 0.94050 0.85107 1.40648 0.92107 1.43743 1.52033 1.04187 1.27752 1.19565 0.89400 1.04022 0.77724 1.28099 0.99476 0.82257 1.00103 1.74688 1.13347 1.21916 0.98562 1.85271 1.56414 1.20283 1.37447 1.28420 0.97268 0.85657 0.96785 1.19953 0.96567 0.94391 0.94591 1.21442 0.94921 0.99030 0.99505 1.21327 0.90195 1.01271 1.01964 1.23534 0.88349 0.75649 0.80713 1.90793 1.68527 1.54399 1.25949 1.84520 1.35706 1.57253 1.55855 1.71876 1.15939 1.27012 1.06282 1.21358 0.92901 0.87893 0.91164 1.22910 0.99967 0.98516 0.95862 1.22266 0.98551 0.98507 0.96622 1.22063 0.97589 0.98587 0.97492 1.22480 0.96296 1.01543 0.96656 0.93284 0.86412 0.92387 0.88414 0.87574 0.89761 0.90082 0.87147 0.87091 0.73116 0.92645 0.93382 0.91248 0.92683 0.92993 0.92734 0.93266 0.89675 0.93566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.79 11.50 55.49 0.64 -24.16 16 2 C 0.02 0.61 4.96 -17.43 -0.09 0.52 16 3 Si 0.90 22.09 29.60 -169.99 -5.03 17.06 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 7 C -0.26 -6.91 7.75 -15.06 -0.12 -7.02 16 8 H 0.06 1.68 6.69 -52.49 -0.35 1.33 16 9 N -0.56 -13.75 2.44 -164.93 -0.40 -14.15 16 10 C 0.22 5.35 5.90 -5.19 -0.03 5.31 16 11 C 0.18 3.95 7.80 -156.37 -1.22 2.73 16 12 N -0.38 -8.56 12.16 30.90 0.38 -8.18 16 13 O 0.06 1.17 11.31 18.10 0.20 1.37 16 14 C 0.14 2.24 7.77 -13.06 -0.10 2.14 16 15 C -0.02 -0.15 5.84 -27.88 -0.16 -0.31 16 16 C -0.11 -1.05 4.49 -26.73 -0.12 -1.17 16 17 C -0.11 -0.68 5.81 -27.88 -0.16 -0.84 16 18 C 0.48 4.22 8.33 36.01 0.30 4.52 16 19 O -0.51 -6.78 16.74 -18.76 -0.31 -7.09 16 20 O -0.52 -3.35 13.42 -39.24 -0.53 -3.88 16 21 N -0.48 -9.22 11.55 -9.87 -0.11 -9.34 16 22 C 0.17 3.74 3.40 -66.08 -0.22 3.51 16 23 C -0.13 -2.66 6.46 -24.55 -0.16 -2.82 16 24 C -0.12 -2.03 6.82 -25.07 -0.17 -2.20 16 25 C -0.12 -2.03 6.80 -25.61 -0.17 -2.21 16 26 C -0.13 -2.66 6.41 -25.61 -0.16 -2.82 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.12 3.16 5.56 -51.93 -0.29 2.87 16 29 H 0.06 1.31 7.93 -51.93 -0.41 0.90 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 33 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 34 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.41 1.16 9.10 45.56 0.41 1.58 16 37 H 0.06 1.17 7.84 -51.93 -0.41 0.76 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 1.54 6.58 -51.93 -0.34 1.19 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 2.00 6.94 -51.93 -0.36 1.64 16 45 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 375.16 15.07 5.65 5.65 Total: -1.00 -33.84 375.16 -8.06 -41.90 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -5.95 Total: 1.48 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -2.59 Total: -0.67 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.50 Total: -55.82 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -0.64 Total: -9.60 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.84 -8.06 -41.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739085967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.434 kcal (2) G-P(sol) polarization free energy of solvation -33.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds