Wall clock time and date at job start Tue Mar 31 2020 13:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46923 * 2 1 4 4 C 1.46500 * 120.00219 * 270.00356 * 3 2 1 5 5 C 1.50701 * 109.46667 * 269.99978 * 4 3 2 6 6 H 1.07999 * 120.00592 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99481 * 179.97438 * 5 4 3 8 8 N 1.31507 * 120.00334 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99626 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47494 * 90.00159 * 9 7 5 11 11 H 1.48502 * 109.47185 * 210.00251 * 9 7 5 12 12 H 1.48506 * 109.47065 * 329.99630 * 9 7 5 13 13 C 1.34777 * 119.99643 * 90.00341 * 3 2 1 14 14 O 1.21279 * 119.99689 * 180.02562 * 13 3 2 15 15 C 1.50693 * 120.00339 * 359.97438 * 13 3 2 16 16 O 1.45198 * 109.47402 * 180.02562 * 15 13 3 17 17 C 1.34230 * 117.00173 * 180.02562 * 16 15 13 18 18 O 1.20822 * 120.00010 * 0.02562 * 17 16 15 19 19 C 1.50706 * 119.99763 * 179.97438 * 17 16 15 20 20 H 1.08996 * 109.46822 * 60.00506 * 19 17 16 21 21 C 1.52997 * 109.47238 * 299.99723 * 19 17 16 22 22 C 1.50708 * 109.46685 * 179.97438 * 19 17 16 23 23 C 1.34514 * 125.78500 * 239.71336 * 22 19 17 24 24 C 1.41385 * 106.83591 * 179.89248 * 23 22 19 25 25 C 1.34509 * 106.84067 * 0.37379 * 24 23 22 26 26 C 1.50701 * 125.78837 * 179.75178 * 25 24 23 27 27 O 1.34300 * 125.78958 * 60.02436 * 22 19 17 28 28 H 1.08997 * 109.46768 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46908 * 299.99700 * 1 2 3 30 30 H 1.08997 * 109.47305 * 59.99544 * 1 2 3 31 31 H 1.08996 * 109.47175 * 240.00350 * 2 1 3 32 32 H 1.09002 * 109.47330 * 119.99959 * 2 1 3 33 33 H 1.09003 * 109.46933 * 29.99588 * 4 3 2 34 34 H 1.08997 * 109.47402 * 150.00141 * 4 3 2 35 35 H 0.97000 * 119.99971 * 179.97438 * 8 7 5 36 36 H 1.09007 * 109.47172 * 60.00524 * 15 13 3 37 37 H 1.09003 * 109.47604 * 300.00631 * 15 13 3 38 38 H 1.09002 * 109.47153 * 180.02562 * 21 19 17 39 39 H 1.09001 * 109.46832 * 60.00314 * 21 19 17 40 40 H 1.09004 * 109.47261 * 300.00295 * 21 19 17 41 41 H 1.08001 * 126.58269 * 0.02899 * 23 22 19 42 42 H 1.07996 * 126.57738 * 180.12677 * 24 23 22 43 43 H 1.09006 * 109.47257 * 179.97438 * 26 25 24 44 44 H 1.09000 * 109.47549 * 299.99782 * 26 25 24 45 45 H 1.09000 * 109.47227 * 60.00267 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0720 -1.2687 5 6 3.6857 1.8352 -1.7037 6 1 4.3426 1.2303 -1.0962 7 6 4.1490 2.3899 -2.8780 8 7 3.3487 3.1251 -3.6185 9 14 5.9130 2.0958 -3.4176 10 1 5.9759 0.8747 -4.2603 11 1 6.3921 3.2629 -4.2008 12 1 6.7734 1.9161 -2.2206 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1673 15 6 1.9914 1.3063 2.4723 16 8 2.3054 2.1960 3.5759 17 6 2.1345 1.7122 4.8163 18 8 1.7361 0.5826 4.9746 19 6 2.4406 2.5777 6.0115 20 1 1.8111 3.4672 5.9867 21 6 3.9126 2.9934 5.9765 22 6 2.1664 1.8040 7.2754 23 6 1.2890 2.1497 8.2346 24 6 1.3529 1.1465 9.2288 25 6 2.2714 0.2522 8.8216 26 6 2.6820 -0.9912 9.5675 27 8 2.7609 0.6555 7.6377 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.5816 1.6878 -2.0284 34 1 2.0955 3.1411 -1.1383 35 1 3.6747 3.5156 -4.4444 36 1 2.6214 0.4186 2.5302 37 1 0.9433 1.0124 2.5299 38 1 4.1341 3.6190 6.8412 39 1 4.1105 3.5531 5.0624 40 1 4.5421 2.1038 6.0013 41 1 0.6556 3.0244 8.2426 42 1 0.7777 1.1079 10.1420 43 1 3.4440 -1.5223 8.9969 44 1 3.0845 -0.7143 10.5419 45 1 1.8143 -1.6369 9.7029 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745661584.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:21 Heat of formation + Delta-G solvation = -109.787662 kcal Electronic energy + Delta-G solvation = -27199.461215 eV Core-core repulsion = 23184.180120 eV Total energy + Delta-G solvation = -4015.281095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.85007 -40.60217 -38.98151 -36.48767 -35.31765 -34.71599 -33.36261 -32.85396 -31.43856 -30.19362 -29.16171 -26.76788 -26.63385 -24.55404 -23.09570 -22.63502 -22.01933 -21.32632 -20.07049 -18.72392 -17.82019 -17.21632 -16.73974 -16.43752 -16.31018 -16.20923 -15.78066 -15.19321 -14.82900 -14.58621 -14.29433 -13.82414 -13.51480 -13.42404 -13.33506 -13.24191 -13.11831 -12.99949 -12.71047 -12.44328 -12.29429 -12.09693 -12.07045 -11.84182 -11.79644 -11.62792 -11.24791 -10.95530 -10.89384 -10.63026 -10.55043 -10.49184 -10.15989 -10.06069 -9.67597 -9.01956 -8.52505 -8.46130 -7.77142 -6.07122 -4.11987 1.41595 2.07804 2.24262 2.54859 2.68519 3.23067 3.29154 3.36026 3.40954 3.83535 4.14733 4.42108 4.53335 4.63258 4.68737 4.79643 4.85599 4.87569 5.08763 5.12888 5.13969 5.19703 5.27601 5.35145 5.37662 5.44057 5.48906 5.57256 5.61146 5.71727 5.71862 5.85471 5.96105 5.99331 6.17681 6.28263 6.33938 6.43381 6.97342 6.98083 7.37930 7.45345 7.63955 7.88905 8.18921 8.27797 8.82725 8.97601 9.53063 11.01040 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.020045 B = 0.002507 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.537715 B =11166.526704 C =11620.991603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.049 3.951 16 O -0.325 6.325 17 C 0.462 3.538 18 O -0.499 6.499 19 C 0.004 3.996 20 H 0.139 0.861 21 C -0.148 4.148 22 C 0.000 4.000 23 C -0.194 4.194 24 C -0.216 4.216 25 C -0.007 4.007 26 C -0.074 4.074 27 O -0.159 6.159 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.264 0.736 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.150 0.850 42 H 0.148 0.852 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.846 -6.158 23.876 25.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.292 3.708 14 O -0.394 6.394 15 C -0.028 4.028 16 O -0.239 6.239 17 C 0.303 3.697 18 O -0.386 6.386 19 C -0.015 4.015 20 H 0.157 0.843 21 C -0.205 4.205 22 C -0.050 4.050 23 C -0.213 4.213 24 C -0.235 4.235 25 C -0.058 4.058 26 C -0.131 4.131 27 O -0.055 6.055 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.168 0.832 42 H 0.166 0.834 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.528 -5.930 23.511 24.667 hybrid contribution 0.599 -0.320 -0.371 0.774 sum -3.929 -6.250 23.140 24.289 Atomic orbital electron populations 1.22233 0.96518 1.01707 1.02412 1.21513 0.93770 0.83953 1.03034 1.48214 1.63796 1.13405 1.07139 1.19335 0.96486 0.93710 0.77540 1.21423 0.96852 1.32074 1.06354 0.92402 1.24934 0.97933 0.94854 0.96355 1.69925 1.35717 1.33349 1.14300 0.86484 0.84574 0.77687 0.78607 1.20633 1.21053 1.19860 1.19685 0.79727 0.87146 0.84256 1.90713 1.44527 1.17460 1.86734 1.22995 1.02739 0.92684 0.84371 1.86541 1.78469 1.44866 1.14069 1.23499 0.74612 0.86939 0.84619 1.90691 1.41657 1.19639 1.86583 1.19476 1.02100 0.96116 0.83822 0.84303 1.21851 0.91156 1.02908 1.04599 1.21449 0.98463 0.87814 0.97314 1.21534 1.02141 1.02388 0.95272 1.21496 1.03212 0.96400 1.02373 1.22478 0.98186 0.99062 0.86077 1.20315 1.02847 0.91435 0.98485 1.83979 1.54315 1.34226 1.32949 0.91891 0.93154 0.91753 0.89389 0.91774 0.94625 0.93681 0.92659 0.88661 0.88729 0.90450 0.89374 0.91510 0.83207 0.83421 0.90519 0.89687 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.10 1.61 5.93 -4.04 -0.02 1.58 16 3 N -0.59 -12.40 2.46 -175.06 -0.43 -12.83 16 4 C 0.25 6.38 5.16 -5.19 -0.03 6.36 16 5 C -0.53 -14.83 9.39 -34.44 -0.32 -15.16 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 9 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.51 10.72 7.75 -10.99 -0.09 10.63 16 14 O -0.52 -13.24 16.08 -14.10 -0.23 -13.46 16 15 C 0.05 0.81 4.50 36.00 0.16 0.98 16 16 O -0.32 -5.37 9.66 -45.90 -0.44 -5.81 16 17 C 0.46 6.75 7.25 36.01 0.26 7.01 16 18 O -0.50 -8.35 15.55 -22.31 -0.35 -8.70 16 19 C 0.00 0.04 3.23 -92.92 -0.30 -0.26 16 20 H 0.14 1.16 8.10 -51.93 -0.42 0.74 16 21 C -0.15 -1.46 9.11 37.16 0.34 -1.12 16 22 C 0.00 0.00 5.20 -35.62 -0.19 -0.19 16 23 C -0.19 -2.02 10.78 -39.70 -0.43 -2.45 16 24 C -0.22 -2.12 10.81 -39.70 -0.43 -2.55 16 25 C -0.01 -0.08 7.32 -35.63 -0.26 -0.34 16 26 C -0.07 -0.49 10.42 36.01 0.38 -0.11 16 27 O -0.16 -2.08 10.35 -1.12 -0.01 -2.10 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.65 7.22 -51.93 -0.37 0.27 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 32 H 0.06 0.86 6.44 -51.93 -0.33 0.53 16 33 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.05 1.31 7.42 -51.93 -0.39 0.92 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.10 1.44 7.39 -51.92 -0.38 1.06 16 37 H 0.09 1.37 7.18 -51.93 -0.37 0.99 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.91 8.11 -51.93 -0.42 0.49 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 42 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 388.02 15.07 5.85 5.85 Total: -1.00 -35.76 388.02 -7.42 -43.18 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -6.88 Total: -1.39 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -0.64 Total: 4.14 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.31 Total: -38.44 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -1.03 Total: -30.07 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.76 -7.42 -43.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745661584.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.609 kcal (2) G-P(sol) polarization free energy of solvation -35.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds