Wall clock time and date at job start Tue Mar 31 2020 13:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46923 * 2 1 4 4 C 1.46500 * 120.00219 * 270.00356 * 3 2 1 5 5 C 1.50701 * 109.46667 * 269.99978 * 4 3 2 6 6 H 1.07999 * 120.00592 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99481 * 179.97438 * 5 4 3 8 8 N 1.31507 * 120.00334 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99626 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47494 * 90.00159 * 9 7 5 11 11 H 1.48502 * 109.47185 * 210.00251 * 9 7 5 12 12 H 1.48506 * 109.47065 * 329.99630 * 9 7 5 13 13 C 1.34777 * 119.99643 * 90.00341 * 3 2 1 14 14 O 1.21279 * 119.99689 * 180.02562 * 13 3 2 15 15 C 1.50693 * 120.00339 * 359.97438 * 13 3 2 16 16 O 1.45198 * 109.47402 * 180.02562 * 15 13 3 17 17 C 1.34230 * 117.00173 * 180.02562 * 16 15 13 18 18 O 1.20822 * 120.00010 * 0.02562 * 17 16 15 19 19 C 1.50706 * 119.99763 * 179.97438 * 17 16 15 20 20 H 1.08996 * 109.46822 * 60.00506 * 19 17 16 21 21 C 1.52997 * 109.47238 * 299.99723 * 19 17 16 22 22 C 1.50708 * 109.46685 * 179.97438 * 19 17 16 23 23 C 1.34514 * 125.78500 * 239.71336 * 22 19 17 24 24 C 1.41385 * 106.83591 * 179.89248 * 23 22 19 25 25 C 1.34509 * 106.84067 * 0.37379 * 24 23 22 26 26 C 1.50701 * 125.78837 * 179.75178 * 25 24 23 27 27 O 1.34300 * 125.78958 * 60.02436 * 22 19 17 28 28 H 1.08997 * 109.46768 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46908 * 299.99700 * 1 2 3 30 30 H 1.08997 * 109.47305 * 59.99544 * 1 2 3 31 31 H 1.08996 * 109.47175 * 240.00350 * 2 1 3 32 32 H 1.09002 * 109.47330 * 119.99959 * 2 1 3 33 33 H 1.09003 * 109.46933 * 29.99588 * 4 3 2 34 34 H 1.08997 * 109.47402 * 150.00141 * 4 3 2 35 35 H 0.97000 * 119.99971 * 179.97438 * 8 7 5 36 36 H 1.09007 * 109.47172 * 60.00524 * 15 13 3 37 37 H 1.09003 * 109.47604 * 300.00631 * 15 13 3 38 38 H 1.09002 * 109.47153 * 180.02562 * 21 19 17 39 39 H 1.09001 * 109.46832 * 60.00314 * 21 19 17 40 40 H 1.09004 * 109.47261 * 300.00295 * 21 19 17 41 41 H 1.08001 * 126.58269 * 0.02899 * 23 22 19 42 42 H 1.07996 * 126.57738 * 180.12677 * 24 23 22 43 43 H 1.09006 * 109.47257 * 179.97438 * 26 25 24 44 44 H 1.09000 * 109.47549 * 299.99782 * 26 25 24 45 45 H 1.09000 * 109.47227 * 60.00267 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0720 -1.2687 5 6 3.6857 1.8352 -1.7037 6 1 4.3426 1.2303 -1.0962 7 6 4.1490 2.3899 -2.8780 8 7 3.3487 3.1251 -3.6185 9 14 5.9130 2.0958 -3.4176 10 1 5.9759 0.8747 -4.2603 11 1 6.3921 3.2629 -4.2008 12 1 6.7734 1.9161 -2.2206 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1673 15 6 1.9914 1.3063 2.4723 16 8 2.3054 2.1960 3.5759 17 6 2.1345 1.7122 4.8163 18 8 1.7361 0.5826 4.9746 19 6 2.4406 2.5777 6.0115 20 1 1.8111 3.4672 5.9867 21 6 3.9126 2.9934 5.9765 22 6 2.1664 1.8040 7.2754 23 6 1.2890 2.1497 8.2346 24 6 1.3529 1.1465 9.2288 25 6 2.2714 0.2522 8.8216 26 6 2.6820 -0.9912 9.5675 27 8 2.7609 0.6555 7.6377 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.5816 1.6878 -2.0284 34 1 2.0955 3.1411 -1.1383 35 1 3.6747 3.5156 -4.4444 36 1 2.6214 0.4186 2.5302 37 1 0.9433 1.0124 2.5299 38 1 4.1341 3.6190 6.8412 39 1 4.1105 3.5531 5.0624 40 1 4.5421 2.1038 6.0013 41 1 0.6556 3.0244 8.2426 42 1 0.7777 1.1079 10.1420 43 1 3.4440 -1.5223 8.9969 44 1 3.0845 -0.7143 10.5419 45 1 1.8143 -1.6369 9.7029 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745661584.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:21 Heat of formation + Delta-G solvation = -130.204504 kcal Electronic energy + Delta-G solvation = -27200.346555 eV Core-core repulsion = 23184.180120 eV Total energy + Delta-G solvation = -4016.166436 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.64018 -41.84148 -40.60049 -37.76531 -36.99535 -35.59783 -34.94243 -34.11279 -32.12762 -31.74593 -30.64484 -28.46232 -27.46420 -25.64180 -24.76979 -24.11848 -22.80868 -22.34987 -20.93491 -20.30130 -18.99693 -18.66799 -18.34549 -17.90253 -17.56371 -17.32942 -17.05011 -16.62338 -16.20310 -16.01069 -15.46455 -14.94029 -14.82898 -14.68458 -14.41848 -14.01966 -13.97172 -13.91216 -13.75205 -13.72553 -13.62926 -13.33182 -13.28693 -13.09457 -12.99775 -12.70272 -12.65110 -12.54472 -12.51918 -12.24661 -12.08596 -11.83099 -11.73105 -11.62591 -10.82785 -10.75315 -10.64787 -9.56349 -9.27770 -8.23844 -6.38230 0.58094 0.95100 1.22923 1.36781 1.39643 1.49686 1.59545 1.69068 1.92110 2.30822 2.43502 3.06241 3.34326 3.40348 3.53213 3.80741 3.88266 3.93089 3.95259 4.10616 4.12303 4.16952 4.35612 4.53554 4.56333 4.69889 4.70078 4.72454 4.84490 4.85201 4.88402 4.92456 5.01140 5.02972 5.11562 5.14849 5.19810 5.28555 5.33869 5.52929 5.63479 5.78344 6.03363 6.21129 6.44863 6.60650 6.70661 7.19308 7.35396 8.83614 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.020045 B = 0.002507 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.537715 B =11166.526704 C =11620.991603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.545 4.545 6 H 0.053 0.947 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.263 1.263 11 H -0.280 1.280 12 H -0.273 1.273 13 C 0.501 3.499 14 O -0.574 6.574 15 C 0.061 3.939 16 O -0.340 6.340 17 C 0.463 3.537 18 O -0.521 6.521 19 C 0.008 3.992 20 H 0.167 0.833 21 C -0.143 4.143 22 C -0.028 4.028 23 C -0.191 4.191 24 C -0.225 4.225 25 C -0.022 4.022 26 C -0.074 4.074 27 O -0.187 6.187 28 H 0.097 0.903 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.030 0.970 34 H 0.001 0.999 35 H 0.268 0.732 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.054 0.946 41 H 0.173 0.827 42 H 0.172 0.828 43 H 0.072 0.928 44 H 0.106 0.894 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.911 -7.589 25.812 27.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.792 3.208 10 H -0.188 1.188 11 H -0.206 1.206 12 H -0.198 1.198 13 C 0.288 3.712 14 O -0.454 6.454 15 C -0.016 4.016 16 O -0.256 6.256 17 C 0.307 3.693 18 O -0.410 6.410 19 C -0.011 4.011 20 H 0.185 0.815 21 C -0.200 4.200 22 C -0.078 4.078 23 C -0.210 4.210 24 C -0.243 4.243 25 C -0.072 4.072 26 C -0.130 4.130 27 O -0.084 6.084 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.048 0.952 34 H 0.019 0.981 35 H 0.077 0.923 36 H 0.131 0.869 37 H 0.139 0.861 38 H 0.119 0.881 39 H 0.098 0.902 40 H 0.073 0.927 41 H 0.190 0.810 42 H 0.190 0.810 43 H 0.091 0.909 44 H 0.125 0.875 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.618 -7.410 25.463 26.918 hybrid contribution 0.564 0.098 -0.907 1.073 sum -4.054 -7.312 24.556 25.940 Atomic orbital electron populations 1.22174 0.94283 1.03775 1.01877 1.21859 0.95595 0.81045 1.04321 1.48210 1.63592 1.15219 1.05728 1.18801 0.95594 0.91714 0.79675 1.21688 0.97808 1.32207 1.06636 0.92834 1.25841 1.02387 0.94420 0.96393 1.70040 1.37749 1.34071 1.14759 0.85415 0.78983 0.78212 0.78198 1.18823 1.20587 1.19833 1.20464 0.78388 0.86655 0.85708 1.90677 1.47031 1.19993 1.87704 1.22833 1.04602 0.92068 0.82073 1.86555 1.78858 1.45339 1.14819 1.24222 0.73565 0.87100 0.84450 1.90669 1.42865 1.20751 1.86665 1.19656 1.03147 0.96270 0.81987 0.81534 1.21829 0.90337 1.02595 1.05245 1.21649 0.99764 0.88299 0.98064 1.21933 1.01362 1.02991 0.94752 1.21880 1.03288 0.95995 1.03169 1.23277 0.98179 1.00233 0.85512 1.20495 1.03446 0.90196 0.98912 1.83959 1.55285 1.34989 1.34213 0.88445 0.92481 0.93529 0.89925 0.88655 0.95219 0.98087 0.92329 0.86852 0.86136 0.88091 0.90167 0.92711 0.80961 0.81012 0.90874 0.87509 0.88174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 10.24 71.98 0.74 -3.31 16 2 C 0.09 2.86 5.93 86.38 0.51 3.37 16 3 N -0.60 -25.31 2.46 -826.15 -2.03 -27.33 16 4 C 0.26 14.11 5.16 85.63 0.44 14.56 16 5 C -0.54 -31.33 9.39 25.60 0.24 -31.09 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.51 5.46 84.66 0.46 0.97 16 8 N -0.93 -55.79 13.29 21.45 0.28 -55.50 16 9 Si 0.97 44.86 29.54 68.60 2.03 46.88 16 10 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 13 C 0.50 21.49 7.75 87.65 0.68 22.17 16 14 O -0.57 -30.55 16.08 15.77 0.25 -30.29 16 15 C 0.06 1.95 4.50 71.23 0.32 2.27 16 16 O -0.34 -11.11 9.66 -45.06 -0.44 -11.55 16 17 C 0.46 13.18 7.25 71.24 0.52 13.69 16 18 O -0.52 -16.95 15.55 25.38 0.39 -16.56 16 19 C 0.01 0.17 3.23 -12.28 -0.04 0.13 16 20 H 0.17 2.47 8.10 -2.39 -0.02 2.45 16 21 C -0.14 -2.72 9.11 71.98 0.66 -2.07 16 22 C -0.03 -0.64 5.20 24.84 0.13 -0.51 16 23 C -0.19 -3.60 10.78 22.19 0.24 -3.36 16 24 C -0.22 -3.94 10.81 22.19 0.24 -3.70 16 25 C -0.02 -0.43 7.32 24.83 0.18 -0.25 16 26 C -0.07 -0.84 10.42 71.24 0.74 -0.10 16 27 O -0.19 -4.80 10.35 4.10 0.04 -4.75 16 28 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 1.34 7.22 -2.38 -0.02 1.33 16 30 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 2.61 8.07 -2.39 -0.02 2.59 16 32 H 0.10 2.32 6.44 -2.39 -0.02 2.31 16 33 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 34 H 0.00 0.06 7.42 -2.39 -0.02 0.04 16 35 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 36 H 0.11 3.22 7.39 -2.38 -0.02 3.20 16 37 H 0.12 3.23 7.18 -2.39 -0.02 3.21 16 38 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.08 1.65 8.11 -2.39 -0.02 1.63 16 40 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.17 2.26 8.06 -2.91 -0.02 2.23 16 42 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 43 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 44 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -80.65 388.02 7.58 -73.07 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.98 Total: 13.27 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 6.06 Total: 12.77 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -1.74 Total: -82.84 kcal Atomic # 8 Polarization: -63.41 SS G_CDS: 0.26 Total: -63.15 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -80.65 7.58 -73.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745661584.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.135 kcal (2) G-P(sol) polarization free energy of solvation -80.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds