Wall clock time and date at job start Tue Mar 31 2020 13:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47153 * 2 1 4 4 C 1.46507 * 119.99760 * 269.99885 * 3 2 1 5 5 C 1.50704 * 109.46802 * 270.00157 * 4 3 2 6 6 H 1.07990 * 120.00456 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99712 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00039 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00035 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47276 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47202 * 119.99994 * 9 7 5 12 12 H 1.48503 * 109.47194 * 239.99613 * 9 7 5 13 13 C 1.34775 * 120.00649 * 90.00245 * 3 2 1 14 14 O 1.21275 * 120.00423 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99566 * 359.97438 * 13 3 2 16 16 O 1.45202 * 109.46859 * 180.02562 * 15 13 3 17 17 C 1.34230 * 116.99836 * 180.02562 * 16 15 13 18 18 O 1.20833 * 119.99930 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00262 * 180.27336 * 17 16 15 20 20 H 1.09004 * 109.46801 * 299.72165 * 19 17 16 21 21 C 1.53006 * 109.47194 * 59.71653 * 19 17 16 22 22 C 1.50693 * 109.47486 * 179.72204 * 19 17 16 23 23 C 1.34514 * 125.79341 * 120.00007 * 22 19 17 24 24 C 1.41384 * 106.84054 * 180.02562 * 23 22 19 25 25 C 1.34507 * 106.84059 * 359.97438 * 24 23 22 26 26 C 1.50712 * 125.78500 * 180.02562 * 25 24 23 27 27 O 1.34298 * 108.42421 * 359.74007 * 25 24 23 28 28 H 1.08999 * 109.46784 * 300.00418 * 1 2 3 29 29 H 1.09000 * 109.47131 * 60.00153 * 1 2 3 30 30 H 1.08995 * 109.47204 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47446 * 239.99913 * 2 1 3 32 32 H 1.09003 * 109.47278 * 119.99093 * 2 1 3 33 33 H 1.08998 * 109.46807 * 29.99825 * 4 3 2 34 34 H 1.08995 * 109.46943 * 150.00511 * 4 3 2 35 35 H 0.96997 * 120.00431 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.47259 * 60.00127 * 15 13 3 37 37 H 1.09004 * 109.46840 * 299.99907 * 15 13 3 38 38 H 1.09003 * 109.47167 * 180.02562 * 21 19 17 39 39 H 1.09001 * 109.47378 * 300.00588 * 21 19 17 40 40 H 1.09004 * 109.46828 * 60.00529 * 21 19 17 41 41 H 1.07996 * 126.57532 * 359.96158 * 23 22 19 42 42 H 1.08005 * 126.57728 * 180.02562 * 24 23 22 43 43 H 1.08995 * 109.46586 * 90.00315 * 26 25 24 44 44 H 1.09000 * 109.46279 * 209.99993 * 26 25 24 45 45 H 1.08996 * 109.46913 * 330.00025 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2308 -1.0959 7 6 4.1495 2.3903 -2.8775 8 7 3.3495 3.1264 -3.6177 9 14 5.9138 2.0973 -3.4164 10 1 6.6015 1.2421 -2.4159 11 1 5.9218 1.4188 -4.7372 12 1 6.6211 3.3987 -3.5243 13 6 2.2430 2.0167 1.1671 14 8 2.6469 3.1602 1.1671 15 6 1.9914 1.3065 2.4722 16 8 2.3055 2.1963 3.5758 17 6 2.1346 1.7127 4.8162 18 8 1.7352 0.5833 4.9746 19 6 2.4343 2.5804 6.0113 20 1 3.4828 2.8774 5.9907 21 6 1.5498 3.8282 5.9702 22 6 2.1556 1.8085 7.2752 23 6 3.0520 1.5233 8.2367 24 6 2.3663 0.7882 9.2309 25 6 1.0919 0.6687 8.8178 26 6 -0.0121 -0.0404 9.5593 27 8 0.9685 1.2937 7.6355 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8901 33 1 1.5817 1.6876 -2.0284 34 1 2.0956 3.1410 -1.1385 35 1 3.6755 3.5168 -4.4436 36 1 2.6212 0.4188 2.5302 37 1 0.9432 1.0128 2.5298 38 1 1.7669 4.4561 6.8344 39 1 1.7514 4.3866 5.0561 40 1 0.5012 3.5311 5.9908 41 1 4.0954 1.8015 8.2467 42 1 2.7853 0.3983 10.1469 43 1 -0.5167 0.6643 10.2202 44 1 -0.7285 -0.4448 8.8442 45 1 0.4106 -0.8534 10.1495 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745661586.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:23 Heat of formation + Delta-G solvation = -130.243824 kcal Electronic energy + Delta-G solvation = -27192.622213 eV Core-core repulsion = 23176.454072 eV Total energy + Delta-G solvation = -4016.168141 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.64099 -41.84070 -40.60035 -37.76435 -36.99572 -35.59721 -34.94164 -34.11722 -32.12694 -31.74717 -30.64442 -28.46283 -27.46102 -25.64125 -24.76891 -24.12167 -22.81470 -22.34997 -20.93583 -20.29908 -19.01300 -18.65492 -18.34835 -17.91353 -17.57574 -17.27732 -17.04556 -16.66236 -16.32094 -15.85547 -15.41937 -15.10705 -14.82926 -14.55623 -14.45415 -14.00550 -13.97002 -13.94005 -13.75472 -13.73401 -13.61906 -13.34394 -13.29875 -13.06730 -13.00379 -12.70802 -12.64675 -12.53441 -12.51825 -12.24896 -12.08630 -11.82927 -11.70211 -11.62742 -10.83480 -10.75270 -10.65593 -9.56288 -9.28411 -8.23904 -6.38230 0.57679 0.95128 1.22858 1.36769 1.39153 1.50608 1.59608 1.68924 1.91357 2.30786 2.43500 3.06247 3.34211 3.40310 3.53139 3.80480 3.88719 3.93231 3.94942 4.10546 4.12354 4.16422 4.35501 4.55576 4.56208 4.70038 4.70484 4.71665 4.84549 4.84758 4.88560 4.92218 5.01007 5.02986 5.11580 5.14880 5.19831 5.28339 5.33597 5.53157 5.62969 5.78390 6.03316 6.20469 6.44826 6.60691 6.70969 7.19337 7.35426 8.83801 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.021440 B = 0.002478 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.638684 B =11295.225798 C =11815.850497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.262 3.738 5 C -0.543 4.543 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.267 1.267 11 H -0.269 1.269 12 H -0.281 1.281 13 C 0.501 3.499 14 O -0.574 6.574 15 C 0.061 3.939 16 O -0.340 6.340 17 C 0.463 3.537 18 O -0.521 6.521 19 C 0.007 3.993 20 H 0.165 0.835 21 C -0.142 4.142 22 C -0.027 4.027 23 C -0.193 4.193 24 C -0.225 4.225 25 C -0.021 4.021 26 C -0.074 4.074 27 O -0.186 6.186 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.030 0.970 34 H 0.001 0.999 35 H 0.268 0.732 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.171 0.829 42 H 0.172 0.828 43 H 0.097 0.903 44 H 0.073 0.927 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.685 -7.344 25.815 27.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.142 3.858 5 C -0.582 4.582 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.793 3.207 10 H -0.192 1.192 11 H -0.194 1.194 12 H -0.207 1.207 13 C 0.288 3.712 14 O -0.454 6.454 15 C -0.016 4.016 16 O -0.256 6.256 17 C 0.307 3.693 18 O -0.410 6.410 19 C -0.011 4.011 20 H 0.183 0.817 21 C -0.199 4.199 22 C -0.077 4.077 23 C -0.212 4.212 24 C -0.243 4.243 25 C -0.072 4.072 26 C -0.130 4.130 27 O -0.084 6.084 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.116 0.884 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.048 0.952 34 H 0.019 0.981 35 H 0.077 0.923 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.189 0.811 42 H 0.190 0.810 43 H 0.115 0.885 44 H 0.092 0.908 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.895 -6.989 25.470 27.061 hybrid contribution 0.907 0.001 -0.908 1.283 sum -4.988 -6.988 24.562 26.020 Atomic orbital electron populations 1.22174 0.94350 1.03771 1.01832 1.21859 0.95541 0.81050 1.04357 1.48211 1.63588 1.15226 1.05730 1.18809 0.95637 0.91707 0.79680 1.21716 0.97749 1.32110 1.06600 0.92775 1.25851 1.02408 0.94441 0.96418 1.70049 1.37692 1.34118 1.14819 0.85358 0.78982 0.78020 0.78384 1.19150 1.19424 1.20735 1.20463 0.78386 0.86653 0.85705 1.90675 1.47041 1.19979 1.87700 1.22836 1.04547 0.92128 0.82073 1.86556 1.78848 1.45337 1.14814 1.24215 0.73707 0.86951 0.84448 1.90672 1.42708 1.20912 1.86669 1.19653 1.06228 0.93274 0.81994 0.81747 1.21827 0.98473 0.94348 1.05257 1.21636 0.84176 1.03848 0.97999 1.21935 1.01337 1.03152 0.94804 1.21901 0.93316 1.06077 1.03041 1.23282 0.98891 0.99459 0.85519 1.20496 0.94039 0.99879 0.98593 1.83945 1.34051 1.55985 1.34375 0.92569 0.93540 0.88429 0.89885 0.88608 0.95228 0.98108 0.92341 0.86617 0.86363 0.88162 0.90099 0.92503 0.81107 0.81028 0.88487 0.90782 0.87265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 10.24 71.98 0.74 -3.34 16 2 C 0.09 2.86 5.93 86.38 0.51 3.37 16 3 N -0.60 -25.29 2.46 -826.14 -2.03 -27.32 16 4 C 0.26 14.08 5.16 85.63 0.44 14.52 16 5 C -0.54 -31.18 9.39 25.60 0.24 -30.94 16 6 H 0.05 3.08 7.81 -2.92 -0.02 3.06 16 7 C 0.01 0.46 5.46 84.66 0.46 0.92 16 8 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16 9 Si 0.97 44.81 29.54 68.60 2.03 46.83 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 C 0.50 21.47 7.75 87.66 0.68 22.15 16 14 O -0.57 -30.50 16.08 15.79 0.25 -30.25 16 15 C 0.06 1.94 4.50 71.24 0.32 2.26 16 16 O -0.34 -11.09 9.65 -45.06 -0.43 -11.53 16 17 C 0.46 13.17 7.25 71.23 0.52 13.69 16 18 O -0.52 -16.94 15.56 25.25 0.39 -16.55 16 19 C 0.01 0.15 3.23 -12.29 -0.04 0.11 16 20 H 0.17 2.53 8.10 -2.38 -0.02 2.51 16 21 C -0.14 -2.61 9.10 71.98 0.66 -1.96 16 22 C -0.03 -0.61 5.20 24.83 0.13 -0.48 16 23 C -0.19 -3.70 10.78 22.19 0.24 -3.46 16 24 C -0.22 -3.97 10.81 22.19 0.24 -3.73 16 25 C -0.02 -0.42 7.32 24.84 0.18 -0.24 16 26 C -0.07 -0.82 10.42 71.24 0.74 -0.08 16 27 O -0.19 -4.71 10.36 3.63 0.04 -4.68 16 28 H 0.06 1.34 7.22 -2.39 -0.02 1.32 16 29 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.08 2.62 8.07 -2.39 -0.02 2.60 16 32 H 0.10 2.32 6.44 -2.39 -0.02 2.31 16 33 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 34 H 0.00 0.05 7.42 -2.39 -0.02 0.03 16 35 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 36 H 0.12 3.23 7.39 -2.39 -0.02 3.22 16 37 H 0.12 3.21 7.18 -2.38 -0.02 3.20 16 38 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.08 1.60 8.11 -2.39 -0.02 1.58 16 40 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 42 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 43 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -80.52 388.02 7.57 -72.95 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.98 Total: 13.25 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 6.06 Total: 12.80 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -1.74 Total: -82.84 kcal Atomic # 8 Polarization: -63.25 SS G_CDS: 0.25 Total: -63.00 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -80.52 7.57 -72.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745661586.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.297 kcal (2) G-P(sol) polarization free energy of solvation -80.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds