Wall clock time and date at job start Tue Mar 31 2020 14:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35271 * 126.70910 * 2 1 4 4 C 1.41932 * 103.96041 * 179.97438 * 3 2 1 5 5 O 1.35708 * 126.87838 * 179.97438 * 4 3 2 6 6 C 1.42901 * 116.99999 * 180.02562 * 5 4 3 7 7 C 1.50693 * 109.47211 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00094 * 0.02562 * 7 6 5 9 9 N 1.34783 * 120.00155 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99843 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46876 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.49739 * 54.93104 * 11 10 9 13 13 C 1.53036 * 109.50032 * 174.99603 * 11 10 9 14 14 C 1.53039 * 109.53998 * 181.31403 * 13 11 10 15 15 C 1.53191 * 109.31406 * 298.63734 * 14 13 11 16 16 N 1.46930 * 108.77541 * 54.63196 * 15 14 13 17 17 C 1.36929 * 120.62730 * 126.36907 * 16 15 14 18 18 H 1.07999 * 120.00292 * 207.68830 * 17 16 15 19 19 C 1.38818 * 120.00105 * 27.69176 * 17 16 15 20 20 N 1.31621 * 119.99968 * 17.35935 * 19 17 16 21 21 Si 1.86802 * 119.99820 * 197.35942 * 19 17 16 22 22 H 1.48502 * 109.46994 * 89.99908 * 21 19 17 23 23 H 1.48504 * 109.46857 * 209.99763 * 21 19 17 24 24 H 1.48491 * 109.47374 * 329.99981 * 21 19 17 25 25 C 1.46927 * 118.73741 * 306.39200 * 16 15 14 26 26 N 1.30621 * 106.24166 * 0.02562 * 4 3 2 27 27 O 1.20911 * 111.49995 * 0.02562 * 26 4 3 28 28 H 1.09008 * 109.47037 * 89.99831 * 1 2 3 29 29 H 1.09003 * 109.47163 * 209.99787 * 1 2 3 30 30 H 1.08994 * 109.47169 * 330.00134 * 1 2 3 31 31 H 1.08001 * 128.01998 * 359.73975 * 3 2 1 32 32 H 1.09007 * 109.47066 * 300.00389 * 6 5 4 33 33 H 1.09004 * 109.47207 * 59.99868 * 6 5 4 34 34 H 0.96999 * 119.99308 * 0.02562 * 9 7 6 35 35 H 1.09004 * 109.46858 * 299.99752 * 10 9 7 36 36 H 1.08994 * 109.47420 * 60.00383 * 10 9 7 37 37 H 1.09003 * 109.45958 * 301.33934 * 13 11 10 38 38 H 1.09003 * 109.45643 * 61.30687 * 13 11 10 39 39 H 1.08999 * 109.49337 * 58.58636 * 14 13 11 40 40 H 1.08999 * 109.49764 * 178.68208 * 14 13 11 41 41 H 1.08996 * 109.58609 * 174.42353 * 15 14 13 42 42 H 1.09005 * 109.58527 * 294.84876 * 15 14 13 43 43 H 0.96998 * 119.99720 * 180.02562 * 20 19 17 44 44 H 1.08986 * 109.58713 * 293.81860 * 25 16 15 45 45 H 1.09006 * 109.58143 * 173.39068 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0844 0.0000 4 6 3.6245 0.5356 0.0006 5 8 4.7953 1.2218 0.0004 6 6 5.9988 0.4513 0.0005 7 6 7.1879 1.3770 -0.0004 8 8 7.0212 2.5783 -0.0007 9 7 8.4367 0.8700 0.0001 10 6 9.5927 1.7700 -0.0003 11 6 10.8812 0.9450 -0.0002 12 1 10.8692 0.2514 -0.8410 13 6 12.0863 1.8799 -0.1264 14 6 13.3740 1.0535 -0.1594 15 6 13.5059 0.2685 1.1495 16 7 12.2852 -0.5240 1.3508 17 6 12.3581 -1.8735 1.5712 18 1 11.5368 -2.5129 1.2830 19 6 13.4876 -2.4198 2.1652 20 7 14.3266 -1.6454 2.8200 21 14 13.8167 -4.2540 2.0350 22 1 14.6274 -4.5265 0.8210 23 1 14.5581 -4.7104 3.2381 24 1 12.5264 -4.9831 1.9425 25 6 10.9849 0.1589 1.3106 26 7 3.4764 -0.7622 0.0003 27 8 2.3085 -1.0750 -0.0008 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 2.0311 2.1263 -0.0039 32 1 6.0278 -0.1772 0.8907 33 1 6.0277 -0.1776 -0.8893 34 1 8.5700 -0.0908 0.0007 35 1 9.5638 2.3980 -0.8907 36 1 9.5636 2.3991 0.8893 37 1 12.0023 2.4584 -1.0464 38 1 12.1114 2.5571 0.7273 39 1 13.3388 0.3585 -0.9984 40 1 14.2302 1.7184 -0.2728 41 1 14.3678 -0.3962 1.0917 42 1 13.6322 0.9625 1.9806 43 1 15.1160 -2.0271 3.2346 44 1 10.9056 0.8438 2.1546 45 1 10.1834 -0.5783 1.3588 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748323135.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:44 Heat of formation + Delta-G solvation = 6.538775 kcal Electronic energy + Delta-G solvation = -26667.957693 eV Core-core repulsion = 22690.013642 eV Total energy + Delta-G solvation = -3977.944051 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.19417 -40.14447 -38.74054 -37.72494 -34.90786 -34.19045 -33.09274 -32.82910 -30.77707 -30.47262 -28.87726 -28.08532 -25.40701 -25.09665 -23.72015 -22.23541 -21.78697 -20.97372 -20.52854 -19.13184 -18.26329 -18.15508 -17.28782 -17.03333 -16.58948 -16.42447 -15.76740 -15.04252 -14.85881 -14.57367 -14.26126 -14.13657 -13.89213 -13.72896 -13.64896 -13.47275 -13.17427 -12.85865 -12.83970 -12.43630 -12.37381 -12.21714 -11.88236 -11.42614 -11.33837 -11.04758 -10.76286 -10.53993 -10.26873 -10.22185 -10.04965 -9.92870 -9.86116 -9.61181 -9.49921 -9.46870 -9.06614 -8.50210 -6.72367 -5.82794 -3.25762 1.08403 1.96813 2.09014 2.45732 2.76420 3.34748 3.35499 3.41793 3.42805 3.87700 4.42571 4.44213 4.51558 4.59990 4.77911 4.81139 4.86381 4.91737 5.03624 5.17601 5.24654 5.29921 5.38650 5.41077 5.54913 5.57380 5.77782 5.87604 5.94225 6.17875 6.25803 6.32398 6.38013 6.54319 6.64203 6.67537 6.72645 6.81482 6.91048 7.36225 7.39817 7.63712 7.74860 7.93185 8.08102 8.40241 9.16646 9.80061 10.36675 11.25401 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015781 B = 0.002298 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.903030 B =12179.197025 C =13714.562022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.010 4.010 3 C -0.233 4.233 4 C 0.213 3.787 5 O -0.256 6.256 6 C 0.044 3.956 7 C 0.516 3.484 8 O -0.524 6.524 9 N -0.717 5.717 10 C 0.129 3.871 11 C -0.118 4.118 12 H 0.074 0.926 13 C -0.099 4.099 14 C -0.142 4.142 15 C 0.168 3.832 16 N -0.591 5.591 17 C -0.255 4.255 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.901 5.901 21 Si 0.903 3.097 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.153 3.847 26 N -0.410 5.410 27 O 0.099 5.901 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.179 0.821 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.406 0.594 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.047 0.953 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.087 0.913 42 H 0.018 0.982 43 H 0.254 0.746 44 H 0.019 0.981 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.074 4.890 -7.470 24.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.073 4.073 3 C -0.255 4.255 4 C 0.015 3.985 5 O -0.161 6.161 6 C -0.035 4.035 7 C 0.300 3.700 8 O -0.400 6.400 9 N -0.370 5.370 10 C 0.006 3.994 11 C -0.139 4.139 12 H 0.093 0.907 13 C -0.138 4.138 14 C -0.181 4.181 15 C 0.043 3.957 16 N -0.314 5.314 17 C -0.384 4.384 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.733 3.267 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.204 1.204 25 C 0.026 3.974 26 N -0.137 5.137 27 O 0.039 5.961 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.196 0.804 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.241 0.759 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.105 0.895 42 H 0.036 0.964 43 H 0.064 0.936 44 H 0.037 0.963 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -22.111 4.991 -7.351 23.829 hybrid contribution 0.233 -0.786 -0.001 0.820 sum -21.877 4.205 -7.353 23.460 Atomic orbital electron populations 1.20385 0.83477 1.04974 1.04399 1.24363 0.96510 0.85597 1.00876 1.21803 0.88278 1.01719 1.13673 1.22062 0.88452 0.88047 0.99922 1.86275 1.09999 1.30772 1.89067 1.22517 0.82264 0.93687 1.05006 1.19845 0.83895 0.88895 0.77374 1.90746 1.85682 1.15137 1.48435 1.45898 1.04965 1.11328 1.74813 1.21527 0.83572 0.92260 1.02059 1.21974 0.92278 0.97755 1.01868 0.90744 1.21341 0.94820 0.97138 1.00471 1.22173 0.95531 0.98587 1.01809 1.20811 0.90997 0.93218 0.90692 1.44041 0.99710 1.04777 1.82826 1.19164 1.03506 0.82324 1.33433 0.91705 1.25048 0.99575 0.97772 0.97246 1.70042 1.14575 1.34415 1.35466 0.86288 0.78063 0.85233 0.77159 1.21428 1.21754 1.20441 1.20907 0.89709 0.94296 0.92484 1.74187 0.97911 1.14189 1.27452 1.84800 1.10293 1.31975 1.69064 0.89077 0.89481 0.88753 0.80382 0.88314 0.88512 0.75905 0.91692 0.91277 0.93378 0.92411 0.92731 0.93119 0.89496 0.96423 0.93590 0.96275 0.93160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.21 10.45 36.00 0.38 0.17 16 2 C -0.01 -0.07 7.48 -35.37 -0.26 -0.34 16 3 C -0.23 -2.12 11.10 -39.23 -0.44 -2.55 16 4 C 0.21 2.62 8.01 -16.65 -0.13 2.48 16 5 O -0.26 -3.54 9.74 -38.74 -0.38 -3.92 16 6 C 0.04 0.52 6.14 36.00 0.22 0.75 16 7 C 0.52 7.32 7.91 -10.99 -0.09 7.24 16 8 O -0.52 -9.49 16.50 -14.35 -0.24 -9.72 16 9 N -0.72 -9.30 5.33 -60.29 -0.32 -9.62 16 10 C 0.13 1.83 5.07 -4.04 -0.02 1.81 16 11 C -0.12 -1.88 2.37 -90.50 -0.21 -2.10 16 12 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 13 C -0.10 -1.60 5.17 -26.69 -0.14 -1.74 16 14 C -0.14 -2.62 6.08 -26.61 -0.16 -2.78 16 15 C 0.17 3.93 5.31 -3.71 -0.02 3.91 16 16 N -0.59 -14.31 2.99 -172.32 -0.52 -14.82 16 17 C -0.25 -6.79 9.58 -15.06 -0.14 -6.94 16 18 H 0.07 1.68 7.89 -52.49 -0.41 1.27 16 19 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 20 N -0.90 -25.86 11.19 55.49 0.62 -25.23 16 21 Si 0.90 21.38 29.59 -169.99 -5.03 16.35 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 C 0.15 3.01 5.60 -3.71 -0.02 2.99 16 26 N -0.41 -5.03 11.54 30.38 0.35 -4.68 16 27 O 0.10 1.01 11.19 17.05 0.19 1.20 16 28 H 0.09 0.14 8.14 -51.92 -0.42 -0.28 16 29 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.18 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.10 1.05 8.14 -51.92 -0.42 0.63 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.41 4.57 7.71 -40.82 -0.31 4.26 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.09 2.29 6.03 -51.93 -0.31 1.97 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.02 0.40 8.14 -51.94 -0.42 -0.02 16 45 H 0.05 0.94 7.14 -51.93 -0.37 0.57 16 LS Contribution 373.70 15.07 5.63 5.63 Total: -1.00 -33.68 373.70 -7.71 -41.38 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -6.89 Total: 0.56 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -1.13 Total: 2.88 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: 0.13 Total: -54.36 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -0.42 Total: -12.44 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.68 -7.71 -41.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748323135.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.919 kcal (2) G-P(sol) polarization free energy of solvation -33.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds