Wall clock time and date at job start Tue Mar 31 2020 14:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35271 * 126.70910 * 2 1 4 4 C 1.41932 * 103.96041 * 179.97438 * 3 2 1 5 5 O 1.35708 * 126.87838 * 179.97438 * 4 3 2 6 6 C 1.42901 * 116.99999 * 180.02562 * 5 4 3 7 7 C 1.50693 * 109.47211 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00094 * 0.02562 * 7 6 5 9 9 N 1.34783 * 120.00155 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99843 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46876 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.49739 * 54.93104 * 11 10 9 13 13 C 1.53036 * 109.50032 * 174.99603 * 11 10 9 14 14 C 1.53039 * 109.53998 * 181.31403 * 13 11 10 15 15 C 1.53191 * 109.31406 * 298.63734 * 14 13 11 16 16 N 1.46930 * 108.77541 * 54.63196 * 15 14 13 17 17 C 1.36929 * 120.62730 * 126.36907 * 16 15 14 18 18 H 1.07999 * 120.00292 * 207.68830 * 17 16 15 19 19 C 1.38818 * 120.00105 * 27.69176 * 17 16 15 20 20 N 1.31621 * 119.99968 * 17.35935 * 19 17 16 21 21 Si 1.86802 * 119.99820 * 197.35942 * 19 17 16 22 22 H 1.48502 * 109.46994 * 89.99908 * 21 19 17 23 23 H 1.48504 * 109.46857 * 209.99763 * 21 19 17 24 24 H 1.48491 * 109.47374 * 329.99981 * 21 19 17 25 25 C 1.46927 * 118.73741 * 306.39200 * 16 15 14 26 26 N 1.30621 * 106.24166 * 0.02562 * 4 3 2 27 27 O 1.20911 * 111.49995 * 0.02562 * 26 4 3 28 28 H 1.09008 * 109.47037 * 89.99831 * 1 2 3 29 29 H 1.09003 * 109.47163 * 209.99787 * 1 2 3 30 30 H 1.08994 * 109.47169 * 330.00134 * 1 2 3 31 31 H 1.08001 * 128.01998 * 359.73975 * 3 2 1 32 32 H 1.09007 * 109.47066 * 300.00389 * 6 5 4 33 33 H 1.09004 * 109.47207 * 59.99868 * 6 5 4 34 34 H 0.96999 * 119.99308 * 0.02562 * 9 7 6 35 35 H 1.09004 * 109.46858 * 299.99752 * 10 9 7 36 36 H 1.08994 * 109.47420 * 60.00383 * 10 9 7 37 37 H 1.09003 * 109.45958 * 301.33934 * 13 11 10 38 38 H 1.09003 * 109.45643 * 61.30687 * 13 11 10 39 39 H 1.08999 * 109.49337 * 58.58636 * 14 13 11 40 40 H 1.08999 * 109.49764 * 178.68208 * 14 13 11 41 41 H 1.08996 * 109.58609 * 174.42353 * 15 14 13 42 42 H 1.09005 * 109.58527 * 294.84876 * 15 14 13 43 43 H 0.96998 * 119.99720 * 180.02562 * 20 19 17 44 44 H 1.08986 * 109.58713 * 293.81860 * 25 16 15 45 45 H 1.09006 * 109.58143 * 173.39068 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0844 0.0000 4 6 3.6245 0.5356 0.0006 5 8 4.7953 1.2218 0.0004 6 6 5.9988 0.4513 0.0005 7 6 7.1879 1.3770 -0.0004 8 8 7.0212 2.5783 -0.0007 9 7 8.4367 0.8700 0.0001 10 6 9.5927 1.7700 -0.0003 11 6 10.8812 0.9450 -0.0002 12 1 10.8692 0.2514 -0.8410 13 6 12.0863 1.8799 -0.1264 14 6 13.3740 1.0535 -0.1594 15 6 13.5059 0.2685 1.1495 16 7 12.2852 -0.5240 1.3508 17 6 12.3581 -1.8735 1.5712 18 1 11.5368 -2.5129 1.2830 19 6 13.4876 -2.4198 2.1652 20 7 14.3266 -1.6454 2.8200 21 14 13.8167 -4.2540 2.0350 22 1 14.6274 -4.5265 0.8210 23 1 14.5581 -4.7104 3.2381 24 1 12.5264 -4.9831 1.9425 25 6 10.9849 0.1589 1.3106 26 7 3.4764 -0.7622 0.0003 27 8 2.3085 -1.0750 -0.0008 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 2.0311 2.1263 -0.0039 32 1 6.0278 -0.1772 0.8907 33 1 6.0277 -0.1776 -0.8893 34 1 8.5700 -0.0908 0.0007 35 1 9.5638 2.3980 -0.8907 36 1 9.5636 2.3991 0.8893 37 1 12.0023 2.4584 -1.0464 38 1 12.1114 2.5571 0.7273 39 1 13.3388 0.3585 -0.9984 40 1 14.2302 1.7184 -0.2728 41 1 14.3678 -0.3962 1.0917 42 1 13.6322 0.9625 1.9806 43 1 15.1160 -2.0271 3.2346 44 1 10.9056 0.8438 2.1546 45 1 10.1834 -0.5783 1.3588 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748323135.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:43 Heat of formation + Delta-G solvation = -16.671279 kcal Electronic energy + Delta-G solvation = -26668.964157 eV Core-core repulsion = 22690.013642 eV Total energy + Delta-G solvation = -3978.950515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.96064 -41.24923 -39.85555 -39.15951 -36.34088 -34.79884 -34.73456 -33.58809 -32.33635 -32.19569 -29.92645 -28.60909 -27.26427 -26.45768 -24.49280 -23.86312 -22.91617 -22.27087 -21.64753 -20.63760 -19.09251 -18.95072 -18.69997 -18.09268 -17.87595 -17.41318 -16.88647 -16.83063 -16.23617 -15.76453 -15.50904 -15.27721 -15.02388 -14.90431 -14.54778 -14.47507 -14.12201 -14.02306 -13.91784 -13.77757 -13.68127 -13.23736 -13.04150 -12.88801 -12.85963 -12.53354 -12.28194 -12.13198 -11.97063 -11.83831 -11.59785 -11.41391 -11.14128 -11.03365 -10.54502 -10.52386 -10.30098 -10.21519 -8.69548 -7.87761 -5.33301 0.43542 1.17147 1.18368 1.34612 1.46424 1.47906 1.56232 2.15440 2.41841 2.50152 3.10188 3.26735 3.48316 3.58781 3.83007 3.89242 3.95310 3.96810 3.97230 3.99452 4.04368 4.38161 4.39530 4.54612 4.58671 4.73729 4.78103 4.79643 4.85281 4.88036 4.90847 4.98798 5.09729 5.17187 5.27225 5.29643 5.33775 5.42406 5.56212 5.66055 5.77773 5.79096 6.32840 6.38486 6.98627 7.13980 7.20743 7.85436 8.37184 9.18378 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015781 B = 0.002298 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.903030 B =12179.197025 C =13714.562022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.009 3.991 3 C -0.250 4.250 4 C 0.189 3.811 5 O -0.279 6.279 6 C 0.048 3.952 7 C 0.519 3.481 8 O -0.566 6.566 9 N -0.708 5.708 10 C 0.138 3.862 11 C -0.100 4.100 12 H 0.080 0.920 13 C -0.097 4.097 14 C -0.130 4.130 15 C 0.172 3.828 16 N -0.609 5.609 17 C -0.260 4.260 18 H 0.071 0.929 19 C -0.054 4.054 20 N -0.936 5.936 21 Si 0.966 3.034 22 H -0.286 1.286 23 H -0.298 1.298 24 H -0.267 1.267 25 C 0.150 3.850 26 N -0.433 5.433 27 O 0.091 5.909 28 H 0.110 0.890 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.197 0.803 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.416 0.584 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.069 0.931 41 H 0.051 0.949 42 H -0.008 1.008 43 H 0.249 0.751 44 H 0.006 0.994 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.479 4.684 -8.976 27.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.054 4.054 3 C -0.271 4.271 4 C -0.008 4.008 5 O -0.185 6.185 6 C -0.030 4.030 7 C 0.305 3.695 8 O -0.445 6.445 9 N -0.361 5.361 10 C 0.015 3.985 11 C -0.120 4.120 12 H 0.098 0.902 13 C -0.135 4.135 14 C -0.169 4.169 15 C 0.046 3.954 16 N -0.332 5.332 17 C -0.390 4.390 18 H 0.089 0.911 19 C -0.249 4.249 20 N -0.582 5.582 21 Si 0.795 3.205 22 H -0.213 1.213 23 H -0.225 1.225 24 H -0.191 1.191 25 C 0.024 3.976 26 N -0.161 5.161 27 O 0.031 5.969 28 H 0.128 0.872 29 H 0.118 0.882 30 H 0.132 0.868 31 H 0.214 0.786 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.253 0.747 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.010 0.990 43 H 0.058 0.942 44 H 0.024 0.976 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.545 4.763 -8.877 26.531 hybrid contribution 0.879 -0.711 0.499 1.236 sum -23.665 4.052 -8.378 25.429 Atomic orbital electron populations 1.20682 0.79861 1.06570 1.06008 1.25173 0.98101 0.84121 0.98039 1.22178 0.87214 1.03180 1.14566 1.22474 0.88772 0.88600 1.00997 1.86221 1.10836 1.31881 1.89536 1.22521 0.81073 0.92987 1.06398 1.20182 0.84547 0.88551 0.76240 1.90725 1.86273 1.16971 1.50533 1.45813 1.04491 1.11763 1.74062 1.21353 0.82932 0.91995 1.02240 1.21729 0.93313 0.97528 0.99476 0.90180 1.21341 0.93211 0.96875 1.02114 1.21999 0.97882 0.98570 0.98466 1.20644 0.89824 0.92387 0.92509 1.44311 1.01374 1.04520 1.83024 1.19541 1.03436 0.83794 1.32206 0.91111 1.25813 0.99809 1.01717 0.97584 1.70202 1.15020 1.36022 1.36977 0.85280 0.78080 0.80639 0.76536 1.21257 1.22517 1.19116 1.21055 0.87934 0.94421 0.94160 1.74163 0.99088 1.14399 1.28441 1.84751 1.10091 1.33003 1.69047 0.87219 0.88189 0.86789 0.78580 0.87200 0.86669 0.74735 0.90490 0.92174 0.90025 0.92624 0.92762 0.91248 0.93020 0.98968 0.94221 0.97574 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.17 10.45 71.24 0.74 0.58 16 2 C 0.01 0.12 7.48 25.00 0.19 0.31 16 3 C -0.25 -4.24 11.10 22.50 0.25 -3.99 16 4 C 0.19 4.56 8.01 85.79 0.69 5.24 16 5 O -0.28 -7.68 9.74 -71.25 -0.69 -8.37 16 6 C 0.05 1.12 6.14 71.23 0.44 1.56 16 7 C 0.52 14.28 7.91 87.65 0.69 14.97 16 8 O -0.57 -20.30 16.50 16.01 0.26 -20.04 16 9 N -0.71 -17.24 5.33 -463.06 -2.47 -19.71 16 10 C 0.14 3.67 5.07 86.38 0.44 4.11 16 11 C -0.10 -3.00 2.37 -10.72 -0.03 -3.02 16 12 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 13 C -0.10 -2.91 5.17 30.62 0.16 -2.75 16 14 C -0.13 -4.66 6.08 30.67 0.19 -4.47 16 15 C 0.17 8.20 5.31 86.36 0.46 8.66 16 16 N -0.61 -29.67 2.99 -699.10 -2.09 -31.77 16 17 C -0.26 -13.89 9.58 84.04 0.81 -13.08 16 18 H 0.07 3.63 7.89 -2.91 -0.02 3.60 16 19 C -0.05 -2.99 4.91 84.86 0.42 -2.57 16 20 N -0.94 -55.41 11.19 21.65 0.24 -55.17 16 21 Si 0.97 44.42 29.59 68.60 2.03 46.45 16 22 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 C 0.15 5.81 5.60 86.36 0.48 6.30 16 26 N -0.43 -10.38 11.54 -172.59 -1.99 -12.38 16 27 O 0.09 1.76 11.19 71.17 0.80 2.55 16 28 H 0.11 -0.06 8.14 -2.38 -0.02 -0.08 16 29 H 0.10 0.03 8.14 -2.39 -0.02 0.02 16 30 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.20 2.38 8.06 -2.91 -0.02 2.36 16 32 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16 33 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.42 8.57 7.71 -92.71 -0.71 7.86 16 35 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.05 2.81 6.03 -2.39 -0.01 2.80 16 42 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 43 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 44 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 45 H 0.06 2.12 7.14 -2.38 -0.02 2.10 16 Total: -1.00 -75.19 373.70 2.29 -72.90 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.29 Total: 13.70 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 5.92 Total: 11.82 kcal Atomic # 7 Polarization: -112.71 SS G_CDS: -6.31 Total: -119.02 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: 0.37 Total: -25.85 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -75.19 2.29 -72.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748323135.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.233 kcal (2) G-P(sol) polarization free energy of solvation -75.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds