Wall clock time and date at job start Tue Mar 31 2020 14:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35270 * 126.71087 * 2 1 4 4 C 1.41934 * 103.96117 * 180.02562 * 3 2 1 5 5 O 1.35702 * 126.87790 * 179.97438 * 4 3 2 6 6 C 1.42904 * 117.00024 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.47371 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99668 * 0.02562 * 7 6 5 9 9 N 1.34770 * 119.99984 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00081 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47260 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.52259 * 304.92096 * 11 10 9 13 13 C 1.53349 * 109.68078 * 184.75546 * 11 10 9 14 14 C 1.53047 * 109.60312 * 178.74970 * 13 11 10 15 15 C 1.53187 * 109.31470 * 61.37322 * 14 13 11 16 16 N 1.46927 * 108.77628 * 305.36580 * 15 14 13 17 17 C 1.36938 * 120.63023 * 233.63550 * 16 15 14 18 18 H 1.08005 * 120.00173 * 151.80940 * 17 16 15 19 19 C 1.38813 * 119.99936 * 331.80303 * 17 16 15 20 20 N 1.31618 * 120.00004 * 343.08512 * 19 17 16 21 21 Si 1.86806 * 119.99953 * 163.08402 * 19 17 16 22 22 H 1.48500 * 109.46925 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.46793 * 120.00276 * 21 19 17 24 24 H 1.48498 * 109.46814 * 240.00176 * 21 19 17 25 25 C 1.46931 * 118.74004 * 53.60567 * 16 15 14 26 26 N 1.30616 * 106.23928 * 0.24307 * 4 3 2 27 27 O 1.20911 * 111.50013 * 359.56824 * 26 4 3 28 28 H 1.08999 * 109.46938 * 89.99972 * 1 2 3 29 29 H 1.09000 * 109.47306 * 210.00587 * 1 2 3 30 30 H 1.08998 * 109.46999 * 330.00087 * 1 2 3 31 31 H 1.07997 * 128.02197 * 359.97438 * 3 2 1 32 32 H 1.09007 * 109.46849 * 60.00254 * 6 5 4 33 33 H 1.08998 * 109.47175 * 300.00575 * 6 5 4 34 34 H 0.97004 * 120.00310 * 0.02562 * 9 7 6 35 35 H 1.09003 * 109.46482 * 60.00179 * 10 9 7 36 36 H 1.08998 * 109.47326 * 300.00343 * 10 9 7 37 37 H 1.08995 * 109.42137 * 58.71540 * 13 11 10 38 38 H 1.08997 * 109.42274 * 298.78321 * 13 11 10 39 39 H 1.09000 * 109.49464 * 301.42009 * 14 13 11 40 40 H 1.09005 * 109.49328 * 181.32578 * 14 13 11 41 41 H 1.09002 * 109.59047 * 185.58074 * 15 14 13 42 42 H 1.09000 * 109.70819 * 65.21981 * 15 14 13 43 43 H 0.96996 * 119.99787 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.58339 * 66.17992 * 25 16 15 45 45 H 1.09003 * 109.58852 * 186.46581 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0844 0.0000 4 6 3.6245 0.5355 -0.0006 5 8 4.7953 1.2217 -0.0013 6 6 5.9989 0.4512 -0.0013 7 6 7.1881 1.3769 -0.0028 8 8 7.0213 2.5782 -0.0033 9 7 8.4367 0.8698 -0.0035 10 6 9.5928 1.7697 -0.0044 11 6 10.8813 0.9447 -0.0058 12 1 10.8718 0.2529 0.8364 13 6 12.0923 1.8781 0.1130 14 6 13.3785 1.0492 0.1428 15 6 13.5035 0.2606 -1.1645 16 7 12.2805 -0.5300 -1.3587 17 6 12.3497 -1.8803 -1.5759 18 1 11.5317 -2.5183 -1.2752 19 6 13.4712 -2.4291 -2.1825 20 7 14.3069 -1.6559 -2.8429 21 14 13.7944 -4.2650 -2.0614 22 1 12.7134 -4.9068 -1.2709 23 1 13.8261 -4.8529 -3.4246 24 1 15.1003 -4.4946 -1.3928 25 6 10.9816 0.1555 -1.3148 26 7 3.4764 -0.7622 -0.0062 27 8 2.3085 -1.0749 -0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 2.0312 2.1263 -0.0004 32 1 6.0275 -0.1779 -0.8911 33 1 6.0280 -0.1771 0.8889 34 1 8.5701 -0.0910 -0.0035 35 1 9.5644 2.3985 0.8856 36 1 9.5633 2.3983 -0.8944 37 1 12.0133 2.4590 1.0318 38 1 12.1150 2.5530 -0.7426 39 1 13.3454 0.3565 0.9838 40 1 14.2365 1.7128 0.2509 41 1 14.3643 -0.4057 -1.1085 42 1 13.6290 0.9503 -1.9992 43 1 15.0907 -2.0394 -3.2665 44 1 10.9002 0.8384 -2.1605 45 1 10.1784 -0.5801 -1.3605 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748323136.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:48 Heat of formation + Delta-G solvation = 6.422670 kcal Electronic energy + Delta-G solvation = -26667.091130 eV Core-core repulsion = 22689.142045 eV Total energy + Delta-G solvation = -3977.949086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.19437 -40.14321 -38.73671 -37.71081 -34.90684 -34.18971 -33.08556 -32.82865 -30.77967 -30.46717 -28.87635 -28.08498 -25.40390 -25.10131 -23.71988 -22.23292 -21.78835 -20.97309 -20.52787 -19.13233 -18.26283 -18.15507 -17.28603 -17.03327 -16.59073 -16.42361 -15.76759 -15.04188 -14.85823 -14.57264 -14.25919 -14.13600 -13.88730 -13.73411 -13.64278 -13.47458 -13.17339 -12.85924 -12.83789 -12.43534 -12.37200 -12.21704 -11.88252 -11.42512 -11.33592 -11.05416 -10.76602 -10.53768 -10.26058 -10.22474 -10.04889 -9.93047 -9.86035 -9.61479 -9.49854 -9.46086 -9.06593 -8.50824 -6.71507 -5.83036 -3.26404 1.08500 1.96879 2.09046 2.45801 2.76463 3.33786 3.35444 3.41867 3.43533 3.87770 4.42548 4.44020 4.51536 4.60045 4.77991 4.81182 4.86416 4.92056 5.03580 5.17572 5.24986 5.29958 5.38243 5.41126 5.54972 5.57467 5.77819 5.87359 5.94264 6.17822 6.25721 6.32380 6.37966 6.54363 6.64105 6.67524 6.72417 6.81450 6.91172 7.36108 7.39859 7.63931 7.74921 7.93274 8.08131 8.40400 9.16635 9.79939 10.36748 11.25229 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015719 B = 0.002302 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.840525 B =12162.802728 C =13705.558764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.010 4.010 3 C -0.233 4.233 4 C 0.213 3.787 5 O -0.256 6.256 6 C 0.044 3.956 7 C 0.516 3.484 8 O -0.524 6.524 9 N -0.717 5.717 10 C 0.129 3.871 11 C -0.118 4.118 12 H 0.074 0.926 13 C -0.099 4.099 14 C -0.141 4.141 15 C 0.169 3.831 16 N -0.591 5.591 17 C -0.254 4.254 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.901 5.901 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.153 3.847 26 N -0.410 5.410 27 O 0.099 5.901 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.179 0.821 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.406 0.594 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.047 0.953 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.086 0.914 42 H 0.018 0.982 43 H 0.254 0.746 44 H 0.019 0.981 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.020 4.915 7.539 24.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.073 4.073 3 C -0.255 4.255 4 C 0.015 3.985 5 O -0.161 6.161 6 C -0.035 4.035 7 C 0.300 3.700 8 O -0.400 6.400 9 N -0.370 5.370 10 C 0.006 3.994 11 C -0.139 4.139 12 H 0.093 0.907 13 C -0.137 4.137 14 C -0.181 4.181 15 C 0.043 3.957 16 N -0.314 5.314 17 C -0.384 4.384 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.215 1.215 25 C 0.026 3.974 26 N -0.137 5.137 27 O 0.039 5.961 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.196 0.804 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.241 0.759 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.104 0.896 42 H 0.036 0.964 43 H 0.064 0.936 44 H 0.037 0.963 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -22.058 5.017 7.424 23.808 hybrid contribution 0.238 -0.786 -0.030 0.821 sum -21.820 4.231 7.393 23.424 Atomic orbital electron populations 1.20384 0.83476 1.04933 1.04439 1.24363 0.96510 0.85599 1.00873 1.21802 0.88278 1.01719 1.13681 1.22061 0.88453 0.88048 0.99919 1.86274 1.10000 1.30775 1.89065 1.22519 0.82263 0.93685 1.05005 1.19843 0.83891 0.88895 0.77375 1.90747 1.85681 1.15136 1.48443 1.45894 1.04964 1.11333 1.74804 1.21514 0.83565 0.92250 1.02061 1.22021 0.92268 0.97757 1.01860 0.90748 1.21391 0.94760 0.97124 1.00466 1.22168 0.95530 0.98580 1.01794 1.20800 0.90937 0.93240 0.90732 1.44039 0.99656 1.04698 1.82966 1.19190 1.04056 0.82278 1.32841 0.91714 1.25061 0.99624 0.97767 0.97183 1.70045 1.15036 1.34284 1.35133 0.86237 0.77933 0.85308 0.77365 1.20255 1.21712 1.21529 1.20904 0.89736 0.94271 0.92499 1.74185 0.97910 1.14194 1.27450 1.84799 1.10294 1.31977 1.69062 0.89043 0.89499 0.88770 0.80384 0.88324 0.88503 0.75900 0.91682 0.91281 0.93388 0.92415 0.92723 0.93110 0.89566 0.96396 0.93641 0.96301 0.93188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.21 10.45 36.01 0.38 0.17 16 2 C -0.01 -0.07 7.48 -35.37 -0.26 -0.34 16 3 C -0.23 -2.12 11.11 -39.22 -0.44 -2.56 16 4 C 0.21 2.62 8.01 -16.65 -0.13 2.48 16 5 O -0.26 -3.54 9.74 -38.72 -0.38 -3.92 16 6 C 0.04 0.53 6.14 36.01 0.22 0.75 16 7 C 0.52 7.33 7.91 -10.99 -0.09 7.24 16 8 O -0.52 -9.49 16.50 -14.35 -0.24 -9.73 16 9 N -0.72 -9.31 5.33 -60.29 -0.32 -9.63 16 10 C 0.13 1.84 5.08 -4.04 -0.02 1.82 16 11 C -0.12 -1.89 2.39 -90.34 -0.22 -2.10 16 12 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 13 C -0.10 -1.60 5.19 -26.53 -0.14 -1.73 16 14 C -0.14 -2.62 6.08 -26.61 -0.16 -2.78 16 15 C 0.17 3.94 5.30 -3.71 -0.02 3.92 16 16 N -0.59 -14.31 2.99 -172.32 -0.52 -14.83 16 17 C -0.25 -6.78 9.58 -15.06 -0.14 -6.92 16 18 H 0.07 1.68 7.89 -52.48 -0.41 1.27 16 19 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 20 N -0.90 -25.87 11.20 55.49 0.62 -25.25 16 21 Si 0.90 21.36 29.59 -169.99 -5.03 16.33 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 C 0.15 3.01 5.59 -3.71 -0.02 2.99 16 26 N -0.41 -5.03 11.54 30.38 0.35 -4.68 16 27 O 0.10 1.01 11.19 17.06 0.19 1.20 16 28 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 31 H 0.18 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.10 1.05 8.14 -51.92 -0.42 0.63 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.41 4.58 7.70 -40.82 -0.31 4.27 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.09 2.27 6.06 -51.93 -0.31 1.95 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.05 0.94 7.13 -51.93 -0.37 0.56 16 LS Contribution 373.74 15.07 5.63 5.63 Total: -1.00 -33.72 373.74 -7.70 -41.42 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -6.89 Total: 0.53 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -1.13 Total: 2.92 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.13 Total: -54.38 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -0.42 Total: -12.45 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.72 -7.70 -41.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748323136.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.844 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds