Wall clock time and date at job start Tue Mar 31 2020 14:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35269 * 126.70751 * 2 1 4 4 C 1.41928 * 103.95723 * 180.02562 * 3 2 1 5 5 O 1.35713 * 126.87631 * 180.25957 * 4 3 2 6 6 C 1.42901 * 116.99804 * 179.71179 * 5 4 3 7 7 C 1.50704 * 109.46931 * 180.02562 * 6 5 4 8 8 O 1.21276 * 119.99885 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99863 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99728 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.46973 * 180.02562 * 10 9 7 12 12 C 1.53043 * 109.46204 * 295.02773 * 11 10 9 13 13 C 1.53196 * 109.31355 * 178.59851 * 12 11 10 14 14 N 1.46919 * 108.76386 * 54.65804 * 13 12 11 15 15 C 1.36936 * 120.63183 * 126.40278 * 14 13 12 16 16 H 1.07997 * 120.00185 * 331.83080 * 15 14 13 17 17 C 1.38810 * 120.00201 * 151.82682 * 15 14 13 18 18 N 1.31621 * 119.99970 * 343.07565 * 17 15 14 19 19 Si 1.86803 * 120.00167 * 163.07134 * 17 15 14 20 20 H 1.48495 * 109.46955 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47133 * 120.00155 * 19 17 15 22 22 H 1.48501 * 109.47102 * 240.00070 * 19 17 15 23 23 C 1.46931 * 118.74159 * 306.38458 * 14 13 12 24 24 C 1.53043 * 109.46308 * 174.97666 * 11 10 9 25 25 N 1.30621 * 106.24469 * 0.02562 * 4 3 2 26 26 O 1.20916 * 111.49590 * 359.97438 * 25 4 3 27 27 H 1.09001 * 109.47417 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47344 * 299.94327 * 1 2 3 29 29 H 1.08993 * 109.47613 * 59.95104 * 1 2 3 30 30 H 1.07992 * 128.02217 * 0.04420 * 3 2 1 31 31 H 1.09001 * 109.47219 * 300.00176 * 6 5 4 32 32 H 1.08995 * 109.47562 * 60.00311 * 6 5 4 33 33 H 0.97002 * 119.99876 * 359.97438 * 9 7 6 34 34 H 1.08995 * 109.47546 * 300.00718 * 10 9 7 35 35 H 1.09002 * 109.46906 * 60.00983 * 10 9 7 36 36 H 1.08997 * 109.46028 * 55.00107 * 11 10 9 37 37 H 1.08991 * 109.50043 * 298.56826 * 12 11 10 38 38 H 1.09005 * 109.49423 * 58.66351 * 12 11 10 39 39 H 1.09005 * 109.59668 * 294.87026 * 13 12 11 40 40 H 1.08997 * 109.70274 * 174.51094 * 13 12 11 41 41 H 0.97002 * 119.99821 * 180.02562 * 18 17 15 42 42 H 1.09005 * 109.58339 * 293.82389 * 23 14 13 43 43 H 1.08995 * 109.70714 * 173.46161 * 23 14 13 44 44 H 1.08999 * 109.49529 * 301.33986 * 24 11 10 45 45 H 1.08998 * 109.49724 * 61.39974 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3155 1.0844 0.0000 4 6 3.6244 0.5356 -0.0006 5 8 4.7953 1.2218 0.0041 6 6 5.9987 0.4513 0.0087 7 6 7.1879 1.3771 0.0141 8 8 7.0211 2.5783 0.0145 9 7 8.4366 0.8700 0.0196 10 6 9.5926 1.7700 0.0243 11 6 10.8811 0.9451 0.0294 12 6 10.9762 0.1559 1.3373 13 6 12.2497 -0.6955 1.3239 14 7 13.4005 0.1796 1.0626 15 6 14.4791 0.1846 1.9062 16 1 14.3498 -0.0630 2.9495 17 6 15.7387 0.5077 1.4206 18 7 15.9708 0.4831 0.1252 19 14 17.1043 0.9775 2.6054 20 1 16.5903 0.9284 3.9977 21 1 18.2341 0.0246 2.4615 22 1 17.5743 2.3524 2.2989 23 6 13.3723 1.0492 -0.1215 24 6 12.0861 1.8807 -0.0920 25 7 3.4764 -0.7622 -0.0015 26 8 2.3084 -1.0750 -0.0010 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5130 0.8905 29 1 -0.3634 0.5145 -0.8895 30 1 2.0311 2.1262 0.0007 31 1 6.0242 -0.1775 0.8987 32 1 6.0313 -0.1772 -0.8812 33 1 8.5699 -0.0908 0.0205 34 1 9.5674 2.3985 -0.8658 35 1 9.5598 2.3988 0.9141 36 1 10.8725 0.2529 -0.8125 37 1 11.0100 0.8483 2.1783 38 1 10.1059 -0.4932 1.4345 39 1 12.1777 -1.4487 0.5392 40 1 12.3747 -1.1849 2.2897 41 1 16.8511 0.7085 -0.2141 42 1 13.3919 0.4383 -1.0240 43 1 14.2368 1.7130 -0.1106 44 1 12.0059 2.4595 -1.0121 45 1 12.1090 2.5571 0.7624 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748335192.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:38 Heat of formation + Delta-G solvation = 7.110615 kcal Electronic energy + Delta-G solvation = -26420.235893 eV Core-core repulsion = 22442.316639 eV Total energy + Delta-G solvation = -3977.919254 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.26262 -40.23067 -38.81841 -37.75050 -35.04788 -34.24960 -33.01637 -32.86144 -30.95846 -29.88833 -29.13825 -28.21763 -26.48915 -23.99891 -23.78458 -22.36558 -21.82964 -21.06541 -20.61041 -19.16559 -18.34762 -18.22416 -17.33076 -17.11830 -16.70501 -16.49644 -15.81595 -14.99105 -14.88252 -14.59824 -14.32455 -14.00174 -13.93599 -13.77590 -13.61052 -13.52093 -13.25317 -13.18780 -12.91357 -12.43671 -12.38752 -12.13656 -11.83555 -11.50058 -11.37273 -11.01464 -10.75112 -10.54242 -10.29266 -10.22789 -10.11674 -9.91814 -9.91044 -9.59429 -9.57244 -9.47440 -9.13872 -8.48968 -6.68922 -5.80771 -3.23278 1.01645 1.89632 2.01134 2.37567 2.70023 3.26962 3.36083 3.44231 3.46320 3.80197 4.37010 4.42254 4.48393 4.53957 4.68437 4.70975 4.78335 4.86689 5.04287 5.11572 5.17154 5.24700 5.32868 5.38931 5.49621 5.56428 5.80553 5.86680 5.98714 6.07826 6.28212 6.29681 6.40654 6.56207 6.58648 6.65253 6.72301 6.77821 6.94503 7.29190 7.35849 7.63700 7.78433 7.85771 8.00055 8.43578 9.19852 9.83250 10.39766 11.27785 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.041191 B = 0.001791 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.601821 B =15630.937086 C =15908.179539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.008 4.008 3 C -0.233 4.233 4 C 0.213 3.787 5 O -0.256 6.256 6 C 0.045 3.955 7 C 0.514 3.486 8 O -0.521 6.521 9 N -0.718 5.718 10 C 0.125 3.875 11 C -0.090 4.090 12 C -0.128 4.128 13 C 0.145 3.855 14 N -0.592 5.592 15 C -0.252 4.252 16 H 0.065 0.935 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.901 3.099 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.172 3.828 24 C -0.133 4.133 25 N -0.411 5.411 26 O 0.099 5.901 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.179 0.821 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.403 0.597 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.046 0.954 39 H 0.016 0.984 40 H 0.053 0.947 41 H 0.253 0.747 42 H 0.018 0.982 43 H 0.088 0.912 44 H 0.051 0.949 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.419 -1.610 -2.052 29.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.072 4.072 3 C -0.255 4.255 4 C 0.015 3.985 5 O -0.161 6.161 6 C -0.034 4.034 7 C 0.298 3.702 8 O -0.397 6.397 9 N -0.371 5.371 10 C 0.002 3.998 11 C -0.109 4.109 12 C -0.167 4.167 13 C 0.019 3.981 14 N -0.315 5.315 15 C -0.382 4.382 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.547 5.547 19 Si 0.731 3.269 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.215 1.215 23 C 0.046 3.954 24 C -0.173 4.173 25 N -0.139 5.139 26 O 0.038 5.962 27 H 0.104 0.896 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.197 0.803 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.238 0.762 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.036 0.964 43 H 0.106 0.894 44 H 0.070 0.930 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -28.441 -1.408 -2.121 28.555 hybrid contribution 0.711 0.375 0.503 0.949 sum -27.730 -1.032 -1.618 27.796 Atomic orbital electron populations 1.20396 0.83438 1.05005 1.04463 1.24362 0.96515 0.85549 1.00778 1.21797 0.88270 1.01791 1.13660 1.22066 0.88441 0.88048 0.99900 1.86287 1.09987 1.30733 1.89062 1.22508 0.82355 0.93682 1.04855 1.19867 0.83898 0.88950 0.77485 1.90759 1.85622 1.15145 1.48148 1.45922 1.05073 1.11135 1.75002 1.21657 0.83493 0.92370 1.02255 1.21329 0.92999 0.97682 0.98914 1.22089 0.98721 0.99133 0.96779 1.20888 0.87074 0.91668 0.98515 1.44053 1.16214 1.43040 1.28197 1.19225 0.85635 1.43110 0.90215 0.91700 1.25046 0.97069 1.01791 0.95751 1.70038 1.21593 1.51699 1.11417 0.86237 0.82053 0.77984 0.80591 1.20266 1.21736 1.21534 1.20761 0.93956 0.92340 0.88364 1.22183 0.96457 0.98123 1.00500 1.74171 0.97968 1.14170 1.27586 1.84800 1.10292 1.32003 1.69057 0.89551 0.88812 0.88814 0.80347 0.88488 0.88525 0.76220 0.91490 0.91304 0.91178 0.92092 0.93505 0.96593 0.92841 0.93680 0.96424 0.89367 0.93002 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.16 10.45 36.01 0.38 0.22 16 2 C -0.01 -0.06 7.48 -35.37 -0.26 -0.32 16 3 C -0.23 -1.96 11.10 -39.23 -0.44 -2.40 16 4 C 0.21 2.44 8.01 -16.66 -0.13 2.31 16 5 O -0.26 -3.33 9.74 -38.75 -0.38 -3.71 16 6 C 0.04 0.48 6.14 36.01 0.22 0.71 16 7 C 0.51 6.84 7.91 -10.98 -0.09 6.75 16 8 O -0.52 -9.19 16.50 -14.35 -0.24 -9.43 16 9 N -0.72 -8.45 5.27 -60.29 -0.32 -8.77 16 10 C 0.12 1.72 5.06 -4.04 -0.02 1.70 16 11 C -0.09 -1.38 2.19 -90.58 -0.20 -1.58 16 12 C -0.13 -2.04 5.25 -26.61 -0.14 -2.18 16 13 C 0.15 2.91 6.52 -3.71 -0.02 2.88 16 14 N -0.59 -14.51 2.99 -172.32 -0.52 -15.02 16 15 C -0.25 -6.86 9.58 -15.06 -0.14 -7.00 16 16 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 17 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 18 N -0.90 -26.01 11.19 55.49 0.62 -25.39 16 19 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 23 C 0.17 3.98 5.30 -3.71 -0.02 3.96 16 24 C -0.13 -2.41 5.36 -26.61 -0.14 -2.56 16 25 N -0.41 -4.63 11.54 30.38 0.35 -4.28 16 26 O 0.10 0.92 11.19 17.07 0.19 1.11 16 27 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 28 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 29 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 30 H 0.18 1.12 8.06 -52.49 -0.42 0.69 16 31 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.40 3.74 7.65 -40.82 -0.31 3.43 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.05 0.61 7.15 -51.93 -0.37 0.24 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 41 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 2.32 6.07 -51.93 -0.31 2.00 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 373.49 15.07 5.63 5.63 Total: -1.00 -34.08 373.49 -7.66 -41.74 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -6.88 Total: -0.91 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -1.10 Total: 2.45 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 0.14 Total: -53.47 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -0.42 Total: -12.03 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.08 -7.66 -41.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748335192.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.854 kcal (2) G-P(sol) polarization free energy of solvation -34.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds