Wall clock time and date at job start Tue Mar 31 2020 14:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35269 * 126.70751 * 2 1 4 4 C 1.41928 * 103.95723 * 180.02562 * 3 2 1 5 5 O 1.35713 * 126.87631 * 180.25957 * 4 3 2 6 6 C 1.42901 * 116.99804 * 179.71179 * 5 4 3 7 7 C 1.50704 * 109.46931 * 180.02562 * 6 5 4 8 8 O 1.21276 * 119.99885 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99863 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99728 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.46973 * 180.02562 * 10 9 7 12 12 C 1.53043 * 109.46204 * 295.02773 * 11 10 9 13 13 C 1.53196 * 109.31355 * 178.59851 * 12 11 10 14 14 N 1.46919 * 108.76386 * 54.65804 * 13 12 11 15 15 C 1.36936 * 120.63183 * 126.40278 * 14 13 12 16 16 H 1.07997 * 120.00185 * 331.83080 * 15 14 13 17 17 C 1.38810 * 120.00201 * 151.82682 * 15 14 13 18 18 N 1.31621 * 119.99970 * 343.07565 * 17 15 14 19 19 Si 1.86803 * 120.00167 * 163.07134 * 17 15 14 20 20 H 1.48495 * 109.46955 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47133 * 120.00155 * 19 17 15 22 22 H 1.48501 * 109.47102 * 240.00070 * 19 17 15 23 23 C 1.46931 * 118.74159 * 306.38458 * 14 13 12 24 24 C 1.53043 * 109.46308 * 174.97666 * 11 10 9 25 25 N 1.30621 * 106.24469 * 0.02562 * 4 3 2 26 26 O 1.20916 * 111.49590 * 359.97438 * 25 4 3 27 27 H 1.09001 * 109.47417 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47344 * 299.94327 * 1 2 3 29 29 H 1.08993 * 109.47613 * 59.95104 * 1 2 3 30 30 H 1.07992 * 128.02217 * 0.04420 * 3 2 1 31 31 H 1.09001 * 109.47219 * 300.00176 * 6 5 4 32 32 H 1.08995 * 109.47562 * 60.00311 * 6 5 4 33 33 H 0.97002 * 119.99876 * 359.97438 * 9 7 6 34 34 H 1.08995 * 109.47546 * 300.00718 * 10 9 7 35 35 H 1.09002 * 109.46906 * 60.00983 * 10 9 7 36 36 H 1.08997 * 109.46028 * 55.00107 * 11 10 9 37 37 H 1.08991 * 109.50043 * 298.56826 * 12 11 10 38 38 H 1.09005 * 109.49423 * 58.66351 * 12 11 10 39 39 H 1.09005 * 109.59668 * 294.87026 * 13 12 11 40 40 H 1.08997 * 109.70274 * 174.51094 * 13 12 11 41 41 H 0.97002 * 119.99821 * 180.02562 * 18 17 15 42 42 H 1.09005 * 109.58339 * 293.82389 * 23 14 13 43 43 H 1.08995 * 109.70714 * 173.46161 * 23 14 13 44 44 H 1.08999 * 109.49529 * 301.33986 * 24 11 10 45 45 H 1.08998 * 109.49724 * 61.39974 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3155 1.0844 0.0000 4 6 3.6244 0.5356 -0.0006 5 8 4.7953 1.2218 0.0041 6 6 5.9987 0.4513 0.0087 7 6 7.1879 1.3771 0.0141 8 8 7.0211 2.5783 0.0145 9 7 8.4366 0.8700 0.0196 10 6 9.5926 1.7700 0.0243 11 6 10.8811 0.9451 0.0294 12 6 10.9762 0.1559 1.3373 13 6 12.2497 -0.6955 1.3239 14 7 13.4005 0.1796 1.0626 15 6 14.4791 0.1846 1.9062 16 1 14.3498 -0.0630 2.9495 17 6 15.7387 0.5077 1.4206 18 7 15.9708 0.4831 0.1252 19 14 17.1043 0.9775 2.6054 20 1 16.5903 0.9284 3.9977 21 1 18.2341 0.0246 2.4615 22 1 17.5743 2.3524 2.2989 23 6 13.3723 1.0492 -0.1215 24 6 12.0861 1.8807 -0.0920 25 7 3.4764 -0.7622 -0.0015 26 8 2.3084 -1.0750 -0.0010 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5130 0.8905 29 1 -0.3634 0.5145 -0.8895 30 1 2.0311 2.1262 0.0007 31 1 6.0242 -0.1775 0.8987 32 1 6.0313 -0.1772 -0.8812 33 1 8.5699 -0.0908 0.0205 34 1 9.5674 2.3985 -0.8658 35 1 9.5598 2.3988 0.9141 36 1 10.8725 0.2529 -0.8125 37 1 11.0100 0.8483 2.1783 38 1 10.1059 -0.4932 1.4345 39 1 12.1777 -1.4487 0.5392 40 1 12.3747 -1.1849 2.2897 41 1 16.8511 0.7085 -0.2141 42 1 13.3919 0.4383 -1.0240 43 1 14.2368 1.7130 -0.1106 44 1 12.0059 2.4595 -1.0121 45 1 12.1090 2.5571 0.7624 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748335192.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:37 Heat of formation + Delta-G solvation = -16.574094 kcal Electronic energy + Delta-G solvation = -26421.262939 eV Core-core repulsion = 22442.316639 eV Total energy + Delta-G solvation = -3978.946300 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.95038 -41.25715 -39.85877 -39.15600 -36.48008 -34.78370 -34.57931 -33.57934 -32.65093 -31.47622 -30.23350 -28.69836 -27.93969 -25.67066 -24.48121 -23.88356 -22.94497 -22.34211 -21.62884 -20.69906 -19.12543 -18.93871 -18.68237 -18.15175 -17.87270 -17.39342 -16.94105 -16.76943 -16.03205 -15.74274 -15.49725 -15.31317 -14.98708 -14.90008 -14.74114 -14.48741 -14.13924 -14.03535 -13.91611 -13.86318 -13.50056 -13.23007 -13.03528 -12.90622 -12.77544 -12.60184 -12.25853 -12.14188 -12.00355 -11.85908 -11.65066 -11.34030 -11.13659 -11.04199 -10.54961 -10.51527 -10.29442 -10.22102 -8.67457 -7.88313 -5.33133 0.43730 1.17338 1.18769 1.35135 1.44411 1.46873 1.56826 2.15244 2.41394 2.50370 3.10524 3.26350 3.50138 3.69927 3.80508 3.83865 3.89668 3.93734 3.96088 3.98880 4.05986 4.38153 4.48603 4.52812 4.66461 4.70715 4.77283 4.79134 4.80167 4.90387 4.92238 5.00358 5.11104 5.23735 5.27225 5.27981 5.30230 5.41761 5.54583 5.65494 5.77876 5.80417 6.35316 6.39458 7.01046 7.15269 7.20615 7.87600 8.37928 9.17900 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.041191 B = 0.001791 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.601821 B =15630.937086 C =15908.179539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.011 3.989 3 C -0.252 4.252 4 C 0.190 3.810 5 O -0.281 6.281 6 C 0.050 3.950 7 C 0.517 3.483 8 O -0.569 6.569 9 N -0.704 5.704 10 C 0.137 3.863 11 C -0.078 4.078 12 C -0.116 4.116 13 C 0.139 3.861 14 N -0.612 5.612 15 C -0.261 4.261 16 H 0.064 0.936 17 C -0.051 4.051 18 N -0.934 5.934 19 Si 0.964 3.036 20 H -0.268 1.268 21 H -0.292 1.292 22 H -0.291 1.291 23 C 0.177 3.823 24 C -0.123 4.123 25 N -0.431 5.431 26 O 0.091 5.909 27 H 0.099 0.901 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.195 0.805 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.418 0.582 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.050 0.950 38 H 0.086 0.914 39 H 0.019 0.981 40 H 0.051 0.949 41 H 0.249 0.751 42 H -0.001 1.001 43 H 0.051 0.949 44 H 0.069 0.931 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.211 -2.246 -1.593 32.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.053 4.053 3 C -0.274 4.274 4 C -0.007 4.007 5 O -0.187 6.187 6 C -0.029 4.029 7 C 0.303 3.697 8 O -0.448 6.448 9 N -0.358 5.358 10 C 0.014 3.986 11 C -0.097 4.097 12 C -0.155 4.155 13 C 0.014 3.986 14 N -0.336 5.336 15 C -0.392 4.392 16 H 0.082 0.918 17 C -0.246 4.246 18 N -0.581 5.581 19 Si 0.792 3.208 20 H -0.192 1.192 21 H -0.219 1.219 22 H -0.218 1.218 23 C 0.051 3.949 24 C -0.162 4.162 25 N -0.159 5.159 26 O 0.031 5.969 27 H 0.117 0.883 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.212 0.788 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.256 0.744 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.017 0.983 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -31.263 -2.096 -1.650 31.376 hybrid contribution 1.488 0.507 0.353 1.611 sum -29.775 -1.589 -1.297 29.845 Atomic orbital electron populations 1.20684 0.79939 1.06445 1.06133 1.25137 0.98052 0.84113 0.97978 1.22155 0.87385 1.03170 1.14680 1.22448 0.88706 0.88607 1.00959 1.86232 1.10915 1.31979 1.89529 1.22535 0.80859 0.92867 1.06598 1.20270 0.84676 0.88573 0.76219 1.90740 1.86302 1.17289 1.50463 1.45732 1.04198 1.11726 1.74145 1.21350 0.83246 0.92152 1.01886 1.21158 0.92365 0.97184 0.98978 1.21949 0.97925 0.98914 0.96674 1.21080 0.87281 0.91889 0.98376 1.44335 1.16834 1.44372 1.28040 1.19536 0.86678 1.42245 0.90721 0.91790 1.25766 0.99250 1.02448 0.97151 1.70181 1.21773 1.53107 1.13010 0.85259 0.79219 0.77162 0.79127 1.19212 1.21891 1.21750 1.20566 0.95111 0.91823 0.87371 1.21981 0.95227 0.97875 1.01139 1.74145 0.99052 1.14240 1.28464 1.84754 1.10120 1.32954 1.69027 0.88256 0.86993 0.86962 0.78776 0.86686 0.86621 0.74386 0.91552 0.92217 0.90164 0.93077 0.89572 0.96309 0.93050 0.94154 0.98266 0.93105 0.91198 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.07 10.45 71.24 0.74 0.67 16 2 C 0.01 0.12 7.48 25.00 0.19 0.31 16 3 C -0.25 -3.92 11.10 22.50 0.25 -3.67 16 4 C 0.19 4.20 8.01 85.79 0.69 4.89 16 5 O -0.28 -7.15 9.74 -71.30 -0.69 -7.85 16 6 C 0.05 0.99 6.14 71.24 0.44 1.43 16 7 C 0.52 12.99 7.91 87.66 0.69 13.68 16 8 O -0.57 -19.82 16.50 16.02 0.26 -19.55 16 9 N -0.70 -14.83 5.27 -463.06 -2.44 -17.27 16 10 C 0.14 3.51 5.06 86.38 0.44 3.94 16 11 C -0.08 -2.22 2.19 -10.76 -0.02 -2.25 16 12 C -0.12 -3.43 5.25 30.67 0.16 -3.27 16 13 C 0.14 5.43 6.52 86.37 0.56 5.99 16 14 N -0.61 -30.22 2.99 -699.10 -2.09 -32.32 16 15 C -0.26 -14.39 9.58 84.03 0.81 -13.58 16 16 H 0.06 3.45 7.88 -2.91 -0.02 3.43 16 17 C -0.05 -2.85 4.92 84.86 0.42 -2.43 16 18 N -0.93 -55.37 11.19 21.65 0.24 -55.12 16 19 Si 0.96 45.14 29.59 68.60 2.03 47.17 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 23 C 0.18 8.37 5.30 86.36 0.46 8.83 16 24 C -0.12 -4.39 5.36 30.67 0.16 -4.22 16 25 N -0.43 -9.26 11.54 -172.59 -1.99 -11.25 16 26 O 0.09 1.57 11.19 71.25 0.80 2.37 16 27 H 0.10 -0.10 8.14 -2.39 -0.02 -0.12 16 28 H 0.11 -0.21 8.14 -2.38 -0.02 -0.23 16 29 H 0.11 -0.22 8.14 -2.39 -0.02 -0.24 16 30 H 0.20 2.17 8.06 -2.91 -0.02 2.14 16 31 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.42 6.29 7.65 -92.71 -0.71 5.58 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.09 1.91 7.15 -2.38 -0.02 1.89 16 39 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 41 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 42 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 43 H 0.05 2.77 6.07 -2.39 -0.01 2.76 16 44 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -76.59 373.49 2.39 -74.20 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 0.29 Total: 9.30 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 5.98 Total: 10.32 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -6.28 Total: -115.96 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: 0.37 Total: -25.03 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -76.59 2.39 -74.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748335192.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.629 kcal (2) G-P(sol) polarization free energy of solvation -76.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds