Wall clock time and date at job start Tue Mar 31 2020 14:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99841 * 2 1 4 4 C 1.53005 * 109.46922 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.46922 * 64.99982 * 4 3 2 6 6 N 1.41598 * 113.99836 * 179.97438 * 5 4 3 7 7 C 1.29393 * 120.00404 * 180.02562 * 6 5 4 8 8 C 1.47526 * 120.00676 * 180.02562 * 7 6 5 9 9 C 1.39679 * 120.07285 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99608 * 179.97438 * 9 8 7 11 11 C 1.38748 * 120.15295 * 0.02562 * 10 9 8 12 12 O 1.35901 * 119.92393 * 179.97438 * 11 10 9 13 13 C 1.42904 * 116.99856 * 0.02562 * 12 11 10 14 14 C 1.39327 * 120.15399 * 359.97438 * 11 10 9 15 15 O 1.36004 * 120.00096 * 179.97438 * 14 11 10 16 16 C 1.42903 * 116.99787 * 180.02562 * 15 14 11 17 17 C 1.53000 * 109.46726 * 180.02562 * 16 15 14 18 18 C 1.50706 * 109.46735 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99928 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99611 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00327 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99743 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46999 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46979 * 120.00025 * 22 20 18 25 25 H 1.48498 * 109.46942 * 239.99938 * 22 20 18 26 26 C 1.38221 * 120.00059 * 0.25843 * 14 11 10 27 27 H 1.08999 * 109.46979 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46692 * 299.99434 * 1 2 3 29 29 H 1.08997 * 109.47221 * 59.99806 * 1 2 3 30 30 H 1.09006 * 109.47044 * 60.00616 * 3 2 1 31 31 H 1.08989 * 109.47353 * 300.00251 * 3 2 1 32 32 H 1.08997 * 109.47078 * 305.00208 * 4 3 2 33 33 H 1.09003 * 109.46928 * 185.00070 * 4 3 2 34 34 H 1.08008 * 119.99580 * 0.02562 * 7 6 5 35 35 H 1.08003 * 120.00162 * 359.94997 * 9 8 7 36 36 H 1.08000 * 119.92347 * 179.97438 * 10 9 8 37 37 H 1.09001 * 109.47068 * 180.02562 * 13 12 11 38 38 H 1.09007 * 109.46899 * 299.99568 * 13 12 11 39 39 H 1.08997 * 109.47052 * 59.99865 * 13 12 11 40 40 H 1.09002 * 109.47382 * 60.00075 * 16 15 14 41 41 H 1.09001 * 109.46938 * 300.00061 * 16 15 14 42 42 H 1.09001 * 109.47194 * 299.99575 * 17 16 15 43 43 H 1.08992 * 109.47399 * 59.99748 * 17 16 15 44 44 H 0.97000 * 120.00354 * 180.02562 * 21 20 18 45 45 H 1.07995 * 120.07549 * 179.70365 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9648 0.5796 -1.2220 6 7 5.3682 0.4216 -1.3242 7 6 5.8837 -0.1138 -2.3834 8 6 7.3458 -0.2790 -2.4897 9 6 8.1754 0.1425 -1.4480 10 6 9.5416 -0.0131 -1.5487 11 6 10.0958 -0.5875 -2.6837 12 8 11.4431 -0.7382 -2.7783 13 6 12.2260 -0.2837 -1.6726 14 6 9.2742 -1.0102 -3.7265 15 8 9.8208 -1.5723 -4.8378 16 6 8.9191 -1.9821 -5.8679 17 6 9.7117 -2.5874 -7.0283 18 6 8.7608 -3.0189 -8.1149 19 1 7.6976 -2.8762 -7.9902 20 6 9.2484 -3.5960 -9.2684 21 7 10.5431 -3.7693 -9.4205 22 14 8.0697 -4.1316 -10.6150 23 1 6.6759 -3.8282 -10.2024 24 1 8.3848 -3.4001 -11.8684 25 1 8.2117 -5.5918 -10.8450 26 6 7.9041 -0.8528 -3.6343 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.6886 1.8463 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 3.8515 0.5682 0.8409 33 1 3.9785 2.1765 0.0889 34 1 5.2434 -0.4398 -3.1898 35 1 7.7466 0.5907 -0.5638 36 1 10.1819 0.3136 -0.7428 37 1 13.2816 -0.4621 -1.8771 38 1 12.0603 0.7835 -1.5244 39 1 11.9331 -0.8252 -0.7731 40 1 8.3565 -1.1187 -6.2230 41 1 8.2293 -2.7274 -5.4717 42 1 10.4017 -1.8424 -7.4246 43 1 10.2740 -3.4508 -6.6730 44 1 10.8861 -4.1749 -10.2321 45 1 7.2665 -1.1757 -4.4439 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748792299.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:19 Heat of formation + Delta-G solvation = -83.999088 kcal Electronic energy + Delta-G solvation = -25764.711280 eV Core-core repulsion = 21750.548462 eV Total energy + Delta-G solvation = -4014.162819 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.38313 -38.56439 -38.23796 -37.57872 -36.75978 -33.97837 -33.30552 -30.83406 -30.64626 -29.79875 -28.94195 -27.16285 -26.57850 -25.07229 -23.63474 -22.76164 -22.44189 -20.61663 -20.40560 -18.32506 -17.74735 -17.09113 -17.02719 -16.36389 -16.14471 -15.90320 -15.76020 -15.63592 -15.05391 -15.00646 -14.70091 -14.60533 -14.54812 -14.13908 -13.95245 -13.06792 -12.81366 -12.66957 -12.33135 -12.27955 -12.17987 -12.05314 -11.84646 -11.65629 -11.49991 -11.17025 -11.04501 -10.90124 -10.83371 -10.56861 -10.11544 -10.02576 -9.91221 -9.71933 -9.64456 -9.25754 -8.55790 -8.42476 -7.53667 -6.07800 -4.12283 0.78471 1.45529 2.39732 2.46304 3.28455 3.31737 3.35497 3.37029 3.39024 3.74714 3.85858 4.42318 4.56136 4.62421 4.69901 4.81480 4.90164 4.94908 4.97667 5.02939 5.12748 5.14799 5.17566 5.23209 5.28687 5.31809 5.33735 5.38240 5.46984 5.49676 5.72264 5.88844 6.05139 6.07328 6.22700 6.31070 6.45538 6.64340 6.72609 6.73510 7.24698 7.39583 7.56249 7.68152 7.83805 8.07724 8.26330 8.93682 9.51912 11.03729 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008274 B = 0.002555 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3383.391059 B =10955.595032 C =14210.739132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.063 3.937 4 C 0.079 3.921 5 O -0.237 6.237 6 N -0.346 5.346 7 C 0.165 3.835 8 C -0.065 4.065 9 C -0.083 4.083 10 C -0.184 4.184 11 C 0.113 3.887 12 O -0.299 6.299 13 C 0.026 3.974 14 C 0.115 3.885 15 O -0.302 6.302 16 C 0.062 3.938 17 C 0.025 3.975 18 C -0.525 4.525 19 H 0.059 0.941 20 C 0.060 3.940 21 N -0.889 5.889 22 Si 0.898 3.102 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.145 4.145 27 H 0.087 0.913 28 H 0.040 0.960 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.124 0.876 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.099 0.901 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.262 0.738 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.718 11.705 22.073 27.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C -0.015 4.015 4 C 0.002 3.998 5 O -0.251 6.251 6 N -0.092 5.092 7 C -0.044 4.044 8 C -0.067 4.067 9 C -0.104 4.104 10 C -0.203 4.203 11 C 0.066 3.934 12 O -0.211 6.211 13 C -0.069 4.069 14 C 0.068 3.932 15 O -0.215 6.215 16 C -0.012 4.012 17 C -0.012 4.012 18 C -0.563 4.563 19 H 0.077 0.923 20 C -0.142 4.142 21 N -0.527 5.527 22 Si 0.725 3.275 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.166 4.166 27 H 0.105 0.895 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.142 0.858 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.118 0.882 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.072 0.928 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.216 11.694 22.471 27.314 hybrid contribution -1.398 -0.178 -1.118 1.799 sum -11.615 11.516 21.353 26.897 Atomic orbital electron populations 1.22762 0.80884 1.03023 0.99916 1.87986 1.19781 1.27245 1.95394 1.22623 0.91945 0.85659 1.01225 1.22390 0.92028 0.98088 0.87309 1.89892 1.14897 1.81177 1.39142 1.76565 0.93580 1.16208 1.22862 1.24219 0.94119 0.91849 0.94198 1.17945 0.89188 1.04038 0.95482 1.20924 0.92086 0.99010 0.98340 1.20937 0.96112 1.05560 0.97678 1.18552 0.83046 0.98598 0.93248 1.86244 1.14321 1.78411 1.42153 1.23076 0.95840 0.99112 0.88914 1.18223 0.90080 0.96839 0.88059 1.86311 1.37117 1.73308 1.24782 1.23385 0.93067 0.97783 0.86973 1.19119 0.95939 0.96594 0.89526 1.21011 0.93156 1.40827 1.01326 0.92291 1.24993 0.95215 0.95636 0.98401 1.69987 1.11909 1.43522 1.27277 0.86444 0.81037 0.78341 0.81638 1.19626 1.20884 1.20869 1.21198 0.93329 1.03015 0.99038 0.89465 0.94098 0.93927 0.91139 0.92292 0.91679 0.91007 0.85843 0.84989 0.84700 0.88219 0.92809 0.92790 0.93030 0.93016 0.95325 0.95317 0.92789 0.83711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -4.02 10.67 -40.09 -0.43 -4.44 16 3 C 0.06 0.51 6.32 37.16 0.23 0.75 16 4 C 0.08 0.77 6.78 37.16 0.25 1.02 16 5 O -0.24 -3.19 11.33 -16.32 -0.18 -3.38 16 6 N -0.35 -4.67 10.46 32.12 0.34 -4.34 16 7 C 0.17 2.14 10.90 -14.79 -0.16 1.98 16 8 C -0.06 -0.87 5.87 -105.03 -0.62 -1.49 16 9 C -0.08 -1.03 9.57 -39.18 -0.37 -1.41 16 10 C -0.18 -2.26 9.01 -39.53 -0.36 -2.62 16 11 C 0.11 1.74 6.71 -38.99 -0.26 1.48 16 12 O -0.30 -4.62 10.27 -34.11 -0.35 -4.97 16 13 C 0.03 0.25 9.81 101.05 0.99 1.24 16 14 C 0.12 2.00 6.69 -39.18 -0.26 1.74 16 15 O -0.30 -6.28 9.91 -34.43 -0.34 -6.62 16 16 C 0.06 1.31 4.68 37.16 0.17 1.48 16 17 C 0.03 0.67 5.34 -27.88 -0.15 0.52 16 18 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 19 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 22 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C -0.14 -2.17 8.77 -39.05 -0.34 -2.51 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.45 8.14 -51.94 -0.42 0.02 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 35 H 0.13 1.46 7.54 -52.48 -0.40 1.06 16 36 H 0.14 1.25 6.27 -52.49 -0.33 0.92 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.43 7.65 -51.93 -0.40 0.04 16 39 H 0.05 0.44 7.65 -51.93 -0.40 0.04 16 40 H 0.05 1.02 7.65 -51.93 -0.40 0.62 16 41 H 0.05 1.02 7.67 -51.93 -0.40 0.63 16 42 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.15 2.04 6.29 -52.49 -0.33 1.71 16 LS Contribution 389.06 15.07 5.86 5.86 Total: -1.00 -33.79 389.06 -6.40 -40.19 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -6.84 Total: -2.99 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -0.17 Total: -9.80 kcal Atomic # 7 Polarization: -31.18 SS G_CDS: 1.07 Total: -30.10 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -1.30 Total: -19.42 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.79 -6.40 -40.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748792299.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.811 kcal (2) G-P(sol) polarization free energy of solvation -33.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds