Wall clock time and date at job start Tue Mar 31 2020 14:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99841 * 2 1 4 4 C 1.53005 * 109.46922 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.46922 * 64.99982 * 4 3 2 6 6 N 1.41598 * 113.99836 * 179.97438 * 5 4 3 7 7 C 1.29393 * 120.00404 * 180.02562 * 6 5 4 8 8 C 1.47526 * 120.00676 * 180.02562 * 7 6 5 9 9 C 1.39679 * 120.07285 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99608 * 179.97438 * 9 8 7 11 11 C 1.38748 * 120.15295 * 0.02562 * 10 9 8 12 12 O 1.35901 * 119.92393 * 179.97438 * 11 10 9 13 13 C 1.42904 * 116.99856 * 0.02562 * 12 11 10 14 14 C 1.39327 * 120.15399 * 359.97438 * 11 10 9 15 15 O 1.36004 * 120.00096 * 179.97438 * 14 11 10 16 16 C 1.42903 * 116.99787 * 180.02562 * 15 14 11 17 17 C 1.53000 * 109.46726 * 180.02562 * 16 15 14 18 18 C 1.50706 * 109.46735 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99928 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99611 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00327 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99743 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46999 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46979 * 120.00025 * 22 20 18 25 25 H 1.48498 * 109.46942 * 239.99938 * 22 20 18 26 26 C 1.38221 * 120.00059 * 0.25843 * 14 11 10 27 27 H 1.08999 * 109.46979 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46692 * 299.99434 * 1 2 3 29 29 H 1.08997 * 109.47221 * 59.99806 * 1 2 3 30 30 H 1.09006 * 109.47044 * 60.00616 * 3 2 1 31 31 H 1.08989 * 109.47353 * 300.00251 * 3 2 1 32 32 H 1.08997 * 109.47078 * 305.00208 * 4 3 2 33 33 H 1.09003 * 109.46928 * 185.00070 * 4 3 2 34 34 H 1.08008 * 119.99580 * 0.02562 * 7 6 5 35 35 H 1.08003 * 120.00162 * 359.94997 * 9 8 7 36 36 H 1.08000 * 119.92347 * 179.97438 * 10 9 8 37 37 H 1.09001 * 109.47068 * 180.02562 * 13 12 11 38 38 H 1.09007 * 109.46899 * 299.99568 * 13 12 11 39 39 H 1.08997 * 109.47052 * 59.99865 * 13 12 11 40 40 H 1.09002 * 109.47382 * 60.00075 * 16 15 14 41 41 H 1.09001 * 109.46938 * 300.00061 * 16 15 14 42 42 H 1.09001 * 109.47194 * 299.99575 * 17 16 15 43 43 H 1.08992 * 109.47399 * 59.99748 * 17 16 15 44 44 H 0.97000 * 120.00354 * 180.02562 * 21 20 18 45 45 H 1.07995 * 120.07549 * 179.70365 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9648 0.5796 -1.2220 6 7 5.3682 0.4216 -1.3242 7 6 5.8837 -0.1138 -2.3834 8 6 7.3458 -0.2790 -2.4897 9 6 8.1754 0.1425 -1.4480 10 6 9.5416 -0.0131 -1.5487 11 6 10.0958 -0.5875 -2.6837 12 8 11.4431 -0.7382 -2.7783 13 6 12.2260 -0.2837 -1.6726 14 6 9.2742 -1.0102 -3.7265 15 8 9.8208 -1.5723 -4.8378 16 6 8.9191 -1.9821 -5.8679 17 6 9.7117 -2.5874 -7.0283 18 6 8.7608 -3.0189 -8.1149 19 1 7.6976 -2.8762 -7.9902 20 6 9.2484 -3.5960 -9.2684 21 7 10.5431 -3.7693 -9.4205 22 14 8.0697 -4.1316 -10.6150 23 1 6.6759 -3.8282 -10.2024 24 1 8.3848 -3.4001 -11.8684 25 1 8.2117 -5.5918 -10.8450 26 6 7.9041 -0.8528 -3.6343 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.6886 1.8463 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 3.8515 0.5682 0.8409 33 1 3.9785 2.1765 0.0889 34 1 5.2434 -0.4398 -3.1898 35 1 7.7466 0.5907 -0.5638 36 1 10.1819 0.3136 -0.7428 37 1 13.2816 -0.4621 -1.8771 38 1 12.0603 0.7835 -1.5244 39 1 11.9331 -0.8252 -0.7731 40 1 8.3565 -1.1187 -6.2230 41 1 8.2293 -2.7274 -5.4717 42 1 10.4017 -1.8424 -7.4246 43 1 10.2740 -3.4508 -6.6730 44 1 10.8861 -4.1749 -10.2321 45 1 7.2665 -1.1757 -4.4439 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748792299.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:18 Heat of formation + Delta-G solvation = -105.483957 kcal Electronic energy + Delta-G solvation = -25765.642934 eV Core-core repulsion = 21750.548462 eV Total energy + Delta-G solvation = -4015.094472 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.54299 -39.50480 -39.29493 -38.58293 -37.76512 -35.49262 -34.85656 -32.45796 -31.66044 -30.96692 -30.02185 -28.02716 -27.16186 -26.96547 -24.65590 -23.98278 -23.44157 -22.20128 -21.52559 -19.50259 -18.75400 -18.55845 -17.78669 -17.72604 -17.28263 -17.14573 -16.69956 -16.51532 -16.45537 -16.33369 -15.84734 -15.70076 -15.61646 -15.11114 -14.93897 -14.31628 -14.30143 -13.97657 -13.58798 -13.37844 -13.17355 -13.10647 -12.89674 -12.72172 -12.63723 -12.57923 -12.37013 -12.25608 -12.08499 -11.90459 -11.59521 -11.56672 -11.35627 -11.00298 -10.73638 -10.67341 -10.59920 -9.67509 -8.71829 -8.23946 -6.37194 -0.27732 0.34852 1.34700 1.42671 1.43527 1.55420 1.57059 2.27172 2.36923 2.51306 2.76538 2.81238 3.10542 3.61031 3.76479 4.00305 4.03414 4.04059 4.16398 4.23316 4.27072 4.32985 4.39566 4.44212 4.45706 4.45812 4.50026 4.54289 4.55664 4.68260 4.72075 4.77845 4.78200 4.85049 5.00494 5.15799 5.28248 5.36252 5.45990 5.51520 5.61177 5.73514 6.08144 6.18105 6.22517 6.42666 6.67773 6.78317 7.32725 8.89409 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008274 B = 0.002555 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3383.391059 B =10955.595032 C =14210.739132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.063 3.937 4 C 0.071 3.929 5 O -0.257 6.257 6 N -0.351 5.351 7 C 0.162 3.838 8 C -0.067 4.067 9 C -0.072 4.072 10 C -0.170 4.170 11 C 0.103 3.897 12 O -0.334 6.334 13 C 0.015 3.985 14 C 0.073 3.927 15 O -0.331 6.331 16 C 0.080 3.920 17 C 0.028 3.972 18 C -0.542 4.542 19 H 0.073 0.927 20 C 0.000 4.000 21 N -0.932 5.932 22 Si 0.976 3.024 23 H -0.257 1.257 24 H -0.278 1.278 25 H -0.278 1.278 26 C -0.141 4.141 27 H 0.090 0.910 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.134 0.866 35 H 0.152 0.848 36 H 0.171 0.829 37 H 0.111 0.889 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.063 0.937 42 H -0.003 1.003 43 H -0.003 1.003 44 H 0.266 0.734 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.751 12.902 23.800 29.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.014 4.014 4 C -0.005 4.005 5 O -0.272 6.272 6 N -0.097 5.097 7 C -0.047 4.047 8 C -0.068 4.068 9 C -0.092 4.092 10 C -0.188 4.188 11 C 0.056 3.944 12 O -0.248 6.248 13 C -0.079 4.079 14 C 0.027 3.973 15 O -0.246 6.246 16 C 0.006 3.994 17 C -0.009 4.009 18 C -0.580 4.580 19 H 0.091 0.909 20 C -0.199 4.199 21 N -0.571 5.571 22 Si 0.799 3.201 23 H -0.180 1.180 24 H -0.203 1.203 25 H -0.204 1.204 26 C -0.162 4.162 27 H 0.108 0.892 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.119 0.881 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.151 0.849 35 H 0.170 0.830 36 H 0.189 0.811 37 H 0.130 0.870 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.015 0.985 43 H 0.015 0.985 44 H 0.075 0.925 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.258 12.911 24.235 30.072 hybrid contribution -0.738 -0.463 -1.458 1.699 sum -12.996 12.448 22.777 29.028 Atomic orbital electron populations 1.22918 0.79305 1.03700 1.01103 1.87929 1.21687 1.28728 1.95676 1.22761 0.90654 0.85162 1.02824 1.22686 0.93321 0.98645 0.85866 1.89883 1.14540 1.81702 1.41034 1.76490 0.94112 1.16140 1.22929 1.24237 0.93903 0.91938 0.94587 1.18000 0.89739 1.03859 0.95249 1.21233 0.92085 0.97563 0.98366 1.21263 0.96452 1.03867 0.97246 1.18805 0.83282 0.98739 0.93575 1.86199 1.14666 1.79035 1.44895 1.23428 0.95819 1.00513 0.88148 1.18598 0.91534 0.99307 0.87878 1.86213 1.37591 1.74791 1.25984 1.22925 0.92119 0.98303 0.86059 1.18956 0.95685 0.94759 0.91531 1.21437 0.93973 1.40690 1.01854 0.90916 1.26050 0.97041 0.95540 1.01249 1.70134 1.14203 1.44492 1.28270 0.85243 0.79050 0.77835 0.77959 1.18013 1.20341 1.20363 1.21230 0.92488 1.02740 0.99741 0.89181 0.92215 0.93381 0.88052 0.92013 0.92054 0.89239 0.84920 0.82998 0.81122 0.87034 0.90854 0.90895 0.91759 0.91836 0.98459 0.98490 0.92534 0.83387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.42 -8.21 10.67 -144.34 -1.54 -9.75 16 3 C 0.06 0.89 6.32 71.98 0.45 1.35 16 4 C 0.07 1.26 6.78 71.98 0.49 1.75 16 5 O -0.26 -6.56 11.33 -34.14 -0.39 -6.95 16 6 N -0.35 -8.87 10.46 -52.30 -0.55 -9.42 16 7 C 0.16 3.97 10.90 87.50 0.95 4.93 16 8 C -0.07 -1.71 5.87 -20.13 -0.12 -1.82 16 9 C -0.07 -1.62 9.57 22.53 0.22 -1.40 16 10 C -0.17 -3.76 9.01 22.31 0.20 -3.56 16 11 C 0.10 3.13 6.71 22.65 0.15 3.28 16 12 O -0.33 -10.33 10.27 -78.40 -0.81 -11.14 16 13 C 0.01 0.26 9.81 113.37 1.11 1.37 16 14 C 0.07 2.56 6.69 22.53 0.15 2.71 16 15 O -0.33 -14.42 9.91 -79.56 -0.79 -15.21 16 16 C 0.08 3.51 4.68 71.98 0.34 3.85 16 17 C 0.03 1.54 5.34 29.85 0.16 1.70 16 18 C -0.54 -30.68 9.11 25.60 0.23 -30.44 16 19 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 20 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 21 N -0.93 -57.26 13.29 21.45 0.28 -56.97 16 22 Si 0.98 43.82 29.54 68.60 2.03 45.85 16 23 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 24 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 25 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 26 C -0.14 -4.19 8.77 22.61 0.20 -4.00 16 27 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.13 2.95 8.06 -2.91 -0.02 2.93 16 35 H 0.15 2.83 7.54 -2.91 -0.02 2.81 16 36 H 0.17 2.47 6.27 -2.91 -0.02 2.45 16 37 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.07 0.99 7.65 -2.38 -0.02 0.97 16 39 H 0.07 0.99 7.65 -2.39 -0.02 0.97 16 40 H 0.06 2.59 7.65 -2.39 -0.02 2.58 16 41 H 0.06 2.57 7.67 -2.39 -0.02 2.56 16 42 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 43 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 44 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 45 H 0.15 4.15 6.29 -2.91 -0.02 4.14 16 Total: -1.00 -75.83 389.06 5.47 -70.36 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.98 Total: 11.51 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: 6.25 Total: -18.29 kcal Atomic # 7 Polarization: -66.13 SS G_CDS: -0.26 Total: -66.39 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -3.52 Total: -43.04 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -75.83 5.47 -70.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748792299.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.123 kcal (2) G-P(sol) polarization free energy of solvation -75.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds