Wall clock time and date at job start Tue Mar 31 2020 14:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30434 * 125.99592 * 2 1 4 4 N 1.39921 * 108.91497 * 180.22559 * 3 2 1 5 5 C 1.46510 * 125.74089 * 179.77121 * 4 3 2 6 6 C 1.53001 * 109.47130 * 254.97402 * 5 4 3 7 7 C 1.53000 * 109.47080 * 14.97671 * 5 4 3 8 8 C 1.52997 * 109.47083 * 134.97327 * 5 4 3 9 9 C 1.34217 * 108.51955 * 359.74909 * 4 3 2 10 10 C 1.38130 * 107.40795 * 0.02562 * 9 4 3 11 11 C 1.47286 * 126.42841 * 179.97438 * 10 9 4 12 12 O 1.21530 * 119.99856 * 180.02562 * 11 10 9 13 13 O 1.34754 * 120.00018 * 0.02663 * 11 10 9 14 14 C 1.45201 * 116.99594 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.46841 * 179.97438 * 14 13 11 16 16 O 1.21283 * 120.00075 * 0.02562 * 15 14 13 17 17 N 1.34777 * 120.00098 * 179.97438 * 15 14 13 18 18 C 1.46500 * 119.99786 * 179.97438 * 17 15 14 19 19 C 1.50705 * 109.47051 * 180.02562 * 18 17 15 20 20 H 1.08005 * 119.99321 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00293 * 180.02562 * 19 18 17 22 22 N 1.31521 * 119.99810 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00259 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47194 * 89.99818 * 23 21 19 25 25 H 1.48496 * 109.47062 * 210.00067 * 23 21 19 26 26 H 1.48503 * 109.46848 * 330.00171 * 23 21 19 27 27 H 1.08999 * 109.47422 * 270.19498 * 1 2 3 28 28 H 1.09010 * 109.47022 * 30.19045 * 1 2 3 29 29 H 1.08996 * 109.47432 * 150.18262 * 1 2 3 30 30 H 1.08994 * 109.46878 * 60.00069 * 6 5 4 31 31 H 1.08995 * 109.46744 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.46876 * 299.99759 * 6 5 4 33 33 H 1.09004 * 109.47195 * 59.99334 * 7 5 4 34 34 H 1.08995 * 109.47202 * 180.02562 * 7 5 4 35 35 H 1.09008 * 109.47012 * 300.00049 * 7 5 4 36 36 H 1.09000 * 109.47400 * 59.99949 * 8 5 4 37 37 H 1.09000 * 109.47515 * 180.02562 * 8 5 4 38 38 H 1.09000 * 109.47328 * 300.00450 * 8 5 4 39 39 H 1.08001 * 126.29914 * 180.02562 * 9 4 3 40 40 H 1.08999 * 109.47057 * 299.99574 * 14 13 11 41 41 H 1.08999 * 109.46972 * 60.00005 * 14 13 11 42 42 H 0.96997 * 120.00128 * 0.02562 * 17 15 14 43 43 H 1.08999 * 109.47605 * 300.00200 * 18 17 15 44 44 H 1.08999 * 109.46988 * 60.00976 * 18 17 15 45 45 H 0.96996 * 119.99549 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0553 0.0000 4 7 3.6111 0.6443 -0.0052 5 6 4.7784 1.5297 -0.0116 6 6 5.4047 1.5378 -1.4076 7 6 4.3443 2.9487 0.3609 8 6 5.8053 1.0271 1.0051 9 6 3.6448 -0.6974 -0.0029 10 6 2.3376 -1.1436 0.0032 11 6 1.8927 -2.5477 0.0071 12 8 0.7058 -2.8090 0.0120 13 8 2.8017 -3.5425 0.0053 14 6 2.2911 -4.9018 0.0088 15 6 3.4446 -5.8716 0.0055 16 8 4.5847 -5.4579 0.0011 17 7 3.2094 -7.1987 0.0084 18 6 4.3308 -8.1413 0.0046 19 6 3.8010 -9.5522 0.0083 20 1 2.7355 -9.7288 0.0126 21 6 4.6765 -10.6173 0.0062 22 7 5.9739 -10.4021 0.0015 23 14 4.0198 -12.3661 0.0101 24 1 3.8409 -12.8308 -1.3890 25 1 4.9833 -13.2551 0.7076 26 1 2.7131 -12.4026 0.7147 27 1 -0.3634 0.0035 1.0276 28 1 -0.3633 0.8884 -0.5168 29 1 -0.3634 -0.8916 -0.5110 30 1 4.6731 1.8959 -2.1318 31 1 6.2728 2.1968 -1.4124 32 1 5.7140 0.5268 -1.6729 33 1 3.8980 2.9429 1.3554 34 1 5.2126 3.6075 0.3557 35 1 3.6126 3.3068 -0.3635 36 1 6.1146 0.0161 0.7398 37 1 6.6736 1.6860 1.0007 38 1 5.3591 1.0212 1.9996 39 1 4.5310 -1.3147 -0.0053 40 1 1.6855 -5.0602 0.9010 41 1 1.6794 -5.0624 -0.8789 42 1 2.2976 -7.5296 0.0122 43 1 4.9356 -7.9831 -0.8883 44 1 4.9435 -7.9807 0.8916 45 1 6.5898 -11.1515 -0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000752188700.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:41 Heat of formation + Delta-G solvation = -59.682452 kcal Electronic energy + Delta-G solvation = -26662.146221 eV Core-core repulsion = 22681.330602 eV Total energy + Delta-G solvation = -3980.815619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.83417 -40.08101 -38.61368 -37.30082 -36.08917 -34.23425 -32.41018 -32.38257 -30.96632 -29.10222 -28.19901 -27.94016 -27.57523 -26.60925 -23.86855 -22.56636 -21.42192 -20.42951 -19.92414 -19.34213 -17.85097 -17.26581 -16.87435 -16.53525 -16.00078 -15.75261 -15.37309 -15.04531 -14.65710 -14.58399 -14.44544 -14.19097 -14.12962 -13.40136 -13.18215 -13.02970 -12.85419 -12.74692 -12.64692 -12.58116 -12.49062 -12.27714 -12.13440 -11.98258 -11.74791 -11.65624 -11.61230 -11.04089 -11.01501 -10.91588 -10.59245 -10.37609 -10.34308 -9.57736 -9.43964 -9.15529 -8.96125 -8.78048 -7.97983 -6.19855 -4.27044 1.20932 1.87541 1.91703 2.61723 3.11238 3.21761 3.23305 3.29525 3.31976 3.85124 4.08244 4.21554 4.32209 4.34035 4.39879 4.47539 4.82277 4.98409 5.02706 5.08329 5.16255 5.16453 5.17351 5.21813 5.28802 5.31341 5.31429 5.35858 5.38906 5.51592 5.52926 5.63385 5.66965 5.77956 5.81854 6.25775 6.50649 6.58642 7.23012 7.32172 7.35821 7.45876 7.60832 7.88241 7.92144 8.51283 8.71650 8.97624 9.39394 10.90303 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020577 B = 0.002201 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.427941 B =12719.018335 C =13872.470196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.135 3.865 3 N -0.298 5.298 4 N -0.347 5.347 5 C 0.175 3.825 6 C -0.162 4.162 7 C -0.143 4.143 8 C -0.165 4.165 9 C 0.136 3.864 10 C -0.281 4.281 11 C 0.543 3.457 12 O -0.517 6.517 13 O -0.331 6.331 14 C 0.052 3.948 15 C 0.500 3.500 16 O -0.537 6.537 17 N -0.707 5.707 18 C 0.251 3.749 19 C -0.544 4.544 20 H 0.064 0.936 21 C 0.064 3.936 22 N -0.885 5.885 23 Si 0.905 3.095 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.272 1.272 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.192 0.808 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.393 0.607 43 H 0.029 0.971 44 H 0.029 0.971 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.957 26.115 -0.015 26.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.032 4.032 3 N -0.119 5.119 4 N -0.125 5.125 5 C 0.093 3.907 6 C -0.220 4.220 7 C -0.201 4.201 8 C -0.223 4.223 9 C -0.016 4.016 10 C -0.294 4.294 11 C 0.388 3.612 12 O -0.407 6.407 13 O -0.246 6.246 14 C -0.026 4.026 15 C 0.284 3.716 16 O -0.414 6.414 17 N -0.357 5.357 18 C 0.131 3.869 19 C -0.583 4.583 20 H 0.083 0.917 21 C -0.140 4.140 22 N -0.523 5.523 23 Si 0.732 3.268 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.197 1.197 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.209 0.791 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.226 0.774 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.092 27.581 -0.012 27.883 hybrid contribution -0.677 -2.258 0.002 2.357 sum -4.769 25.324 -0.010 25.769 Atomic orbital electron populations 1.20363 0.85558 1.04105 1.03641 1.22465 0.97218 0.88341 0.95222 1.77151 0.85987 1.22270 1.26488 1.48788 1.05675 1.04431 1.53619 1.20938 0.81780 0.90500 0.97434 1.22297 1.01520 1.03721 0.94467 1.21917 1.02292 0.92637 1.03207 1.22314 0.98362 1.02935 0.98675 1.23301 0.99400 0.85133 0.93772 1.19276 0.92652 0.90890 1.26554 1.20034 0.83830 0.84951 0.72357 1.90792 1.17626 1.84605 1.47652 1.86589 1.38834 1.15028 1.84110 1.22817 0.96355 0.78840 1.04591 1.19917 0.89527 0.83602 0.78597 1.90688 1.22783 1.78230 1.49737 1.46362 1.12170 1.04732 1.72448 1.19166 0.83998 0.85748 0.97979 1.21216 0.93483 0.90182 1.53398 0.91745 1.24955 0.94729 0.99709 0.94629 1.69975 1.01501 1.31999 1.48777 0.86389 0.78722 0.83398 0.78253 1.20430 1.20996 1.19702 0.90095 0.90883 0.88708 0.91430 0.89967 0.91305 0.91503 0.90691 0.90884 0.90959 0.89626 0.91242 0.79111 0.88521 0.88532 0.77396 0.95298 0.95276 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 9.92 36.01 0.36 -0.43 16 2 C 0.14 1.66 7.27 -82.00 -0.60 1.07 16 3 N -0.30 -3.54 11.55 33.90 0.39 -3.15 16 4 N -0.35 -3.54 3.41 -48.09 -0.16 -3.71 16 5 C 0.18 1.24 1.23 -131.81 -0.16 1.08 16 6 C -0.16 -0.97 8.72 37.16 0.32 -0.64 16 7 C -0.14 -0.89 8.07 37.16 0.30 -0.59 16 8 C -0.16 -0.95 8.28 37.16 0.31 -0.64 16 9 C 0.14 1.53 10.43 -16.55 -0.17 1.36 16 10 C -0.28 -3.72 6.13 -105.08 -0.64 -4.36 16 11 C 0.54 8.16 7.95 34.41 0.27 8.43 16 12 O -0.52 -8.24 14.71 -19.29 -0.28 -8.52 16 13 O -0.33 -5.37 9.58 -47.32 -0.45 -5.82 16 14 C 0.05 0.80 5.95 36.01 0.21 1.01 16 15 C 0.50 9.98 7.91 -10.99 -0.09 9.90 16 16 O -0.54 -12.90 16.50 -14.11 -0.23 -13.13 16 17 N -0.71 -14.57 5.55 -61.47 -0.34 -14.91 16 18 C 0.25 6.54 5.43 -5.19 -0.03 6.51 16 19 C -0.54 -14.54 9.28 -34.44 -0.32 -14.86 16 20 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 22 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 23 Si 0.91 20.63 29.54 -169.99 -5.02 15.61 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 29 H 0.09 1.04 6.56 -51.93 -0.34 0.70 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.53 8.03 -51.92 -0.42 0.11 16 36 H 0.07 0.43 7.34 -51.93 -0.38 0.05 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.19 1.84 7.53 -52.49 -0.39 1.45 16 40 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.39 6.82 8.32 -40.82 -0.34 6.48 16 43 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 386.99 15.07 5.83 5.83 Total: -1.00 -34.29 386.99 -6.77 -41.06 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.90 Total: 2.27 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -0.33 Total: 9.48 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.62 Total: -46.77 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.97 Total: -27.48 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.29 -6.77 -41.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752188700.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.624 kcal (2) G-P(sol) polarization free energy of solvation -34.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds