Wall clock time and date at job start Tue Mar 31 2020 14:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30434 * 125.99592 * 2 1 4 4 N 1.39921 * 108.91497 * 180.22559 * 3 2 1 5 5 C 1.46510 * 125.74089 * 179.77121 * 4 3 2 6 6 C 1.53001 * 109.47130 * 254.97402 * 5 4 3 7 7 C 1.53000 * 109.47080 * 14.97671 * 5 4 3 8 8 C 1.52997 * 109.47083 * 134.97327 * 5 4 3 9 9 C 1.34217 * 108.51955 * 359.74909 * 4 3 2 10 10 C 1.38130 * 107.40795 * 0.02562 * 9 4 3 11 11 C 1.47286 * 126.42841 * 179.97438 * 10 9 4 12 12 O 1.21530 * 119.99856 * 180.02562 * 11 10 9 13 13 O 1.34754 * 120.00018 * 0.02663 * 11 10 9 14 14 C 1.45201 * 116.99594 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.46841 * 179.97438 * 14 13 11 16 16 O 1.21283 * 120.00075 * 0.02562 * 15 14 13 17 17 N 1.34777 * 120.00098 * 179.97438 * 15 14 13 18 18 C 1.46500 * 119.99786 * 179.97438 * 17 15 14 19 19 C 1.50705 * 109.47051 * 180.02562 * 18 17 15 20 20 H 1.08005 * 119.99321 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00293 * 180.02562 * 19 18 17 22 22 N 1.31521 * 119.99810 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00259 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47194 * 89.99818 * 23 21 19 25 25 H 1.48496 * 109.47062 * 210.00067 * 23 21 19 26 26 H 1.48503 * 109.46848 * 330.00171 * 23 21 19 27 27 H 1.08999 * 109.47422 * 270.19498 * 1 2 3 28 28 H 1.09010 * 109.47022 * 30.19045 * 1 2 3 29 29 H 1.08996 * 109.47432 * 150.18262 * 1 2 3 30 30 H 1.08994 * 109.46878 * 60.00069 * 6 5 4 31 31 H 1.08995 * 109.46744 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.46876 * 299.99759 * 6 5 4 33 33 H 1.09004 * 109.47195 * 59.99334 * 7 5 4 34 34 H 1.08995 * 109.47202 * 180.02562 * 7 5 4 35 35 H 1.09008 * 109.47012 * 300.00049 * 7 5 4 36 36 H 1.09000 * 109.47400 * 59.99949 * 8 5 4 37 37 H 1.09000 * 109.47515 * 180.02562 * 8 5 4 38 38 H 1.09000 * 109.47328 * 300.00450 * 8 5 4 39 39 H 1.08001 * 126.29914 * 180.02562 * 9 4 3 40 40 H 1.08999 * 109.47057 * 299.99574 * 14 13 11 41 41 H 1.08999 * 109.46972 * 60.00005 * 14 13 11 42 42 H 0.96997 * 120.00128 * 0.02562 * 17 15 14 43 43 H 1.08999 * 109.47605 * 300.00200 * 18 17 15 44 44 H 1.08999 * 109.46988 * 60.00976 * 18 17 15 45 45 H 0.96996 * 119.99549 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0553 0.0000 4 7 3.6111 0.6443 -0.0052 5 6 4.7784 1.5297 -0.0116 6 6 5.4047 1.5378 -1.4076 7 6 4.3443 2.9487 0.3609 8 6 5.8053 1.0271 1.0051 9 6 3.6448 -0.6974 -0.0029 10 6 2.3376 -1.1436 0.0032 11 6 1.8927 -2.5477 0.0071 12 8 0.7058 -2.8090 0.0120 13 8 2.8017 -3.5425 0.0053 14 6 2.2911 -4.9018 0.0088 15 6 3.4446 -5.8716 0.0055 16 8 4.5847 -5.4579 0.0011 17 7 3.2094 -7.1987 0.0084 18 6 4.3308 -8.1413 0.0046 19 6 3.8010 -9.5522 0.0083 20 1 2.7355 -9.7288 0.0126 21 6 4.6765 -10.6173 0.0062 22 7 5.9739 -10.4021 0.0015 23 14 4.0198 -12.3661 0.0101 24 1 3.8409 -12.8308 -1.3890 25 1 4.9833 -13.2551 0.7076 26 1 2.7131 -12.4026 0.7147 27 1 -0.3634 0.0035 1.0276 28 1 -0.3633 0.8884 -0.5168 29 1 -0.3634 -0.8916 -0.5110 30 1 4.6731 1.8959 -2.1318 31 1 6.2728 2.1968 -1.4124 32 1 5.7140 0.5268 -1.6729 33 1 3.8980 2.9429 1.3554 34 1 5.2126 3.6075 0.3557 35 1 3.6126 3.3068 -0.3635 36 1 6.1146 0.0161 0.7398 37 1 6.6736 1.6860 1.0007 38 1 5.3591 1.0212 1.9996 39 1 4.5310 -1.3147 -0.0053 40 1 1.6855 -5.0602 0.9010 41 1 1.6794 -5.0624 -0.8789 42 1 2.2976 -7.5296 0.0122 43 1 4.9356 -7.9831 -0.8883 44 1 4.9435 -7.9807 0.8916 45 1 6.5898 -11.1515 -0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000752188700.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:41 Heat of formation + Delta-G solvation = -81.703100 kcal Electronic energy + Delta-G solvation = -26663.101108 eV Core-core repulsion = 22681.330602 eV Total energy + Delta-G solvation = -3981.770506 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.71297 -41.33166 -40.22284 -37.99569 -37.28736 -36.15671 -34.39968 -33.18531 -31.96750 -30.59774 -29.07063 -28.41195 -28.32448 -28.15756 -25.06549 -24.31868 -22.41127 -21.61137 -21.28129 -20.27151 -19.17412 -18.70545 -17.95272 -17.75841 -17.47908 -16.96752 -16.68232 -16.61055 -16.00590 -15.87594 -15.38613 -15.04997 -14.94549 -14.67463 -14.35966 -14.20950 -14.04292 -13.82072 -13.68937 -13.58943 -13.31689 -13.16445 -13.10658 -12.98724 -12.92111 -12.76410 -12.71069 -12.34236 -12.22296 -12.18249 -11.85188 -11.83676 -11.49721 -11.46186 -10.87563 -10.80665 -10.43321 -9.91167 -9.87476 -8.28789 -6.44978 0.24463 0.93237 1.09262 1.42248 1.46855 1.47021 1.57897 1.58531 2.06664 2.35910 2.63826 3.06514 3.16306 3.62170 3.68430 3.70096 3.72203 3.81272 3.95119 4.09420 4.11269 4.23145 4.37953 4.55297 4.57688 4.67688 4.69969 4.75849 4.77656 4.81143 4.90516 4.94597 5.07249 5.08906 5.18896 5.21931 5.23671 5.27197 5.43657 5.50853 5.64873 5.82249 5.83395 6.45987 6.63941 6.70000 6.82244 7.21768 7.37398 8.83276 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020577 B = 0.002201 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.427941 B =12719.018335 C =13872.470196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.127 3.873 3 N -0.309 5.309 4 N -0.340 5.340 5 C 0.165 3.835 6 C -0.158 4.158 7 C -0.138 4.138 8 C -0.162 4.162 9 C 0.141 3.859 10 C -0.308 4.308 11 C 0.546 3.454 12 O -0.529 6.529 13 O -0.346 6.346 14 C 0.063 3.937 15 C 0.501 3.499 16 O -0.582 6.582 17 N -0.699 5.699 18 C 0.267 3.733 19 C -0.556 4.556 20 H 0.086 0.914 21 C 0.004 3.996 22 N -0.930 5.930 23 Si 0.984 3.016 24 H -0.271 1.271 25 H -0.285 1.285 26 H -0.256 1.256 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.111 0.889 38 H 0.060 0.940 39 H 0.204 0.796 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.412 0.588 43 H -0.007 1.007 44 H -0.007 1.007 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.086 26.575 0.017 27.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.041 4.041 3 N -0.130 5.130 4 N -0.117 5.117 5 C 0.084 3.916 6 C -0.216 4.216 7 C -0.196 4.196 8 C -0.220 4.220 9 C -0.013 4.013 10 C -0.321 4.321 11 C 0.392 3.608 12 O -0.420 6.420 13 O -0.262 6.262 14 C -0.014 4.014 15 C 0.287 3.713 16 O -0.463 6.463 17 N -0.351 5.351 18 C 0.145 3.855 19 C -0.594 4.594 20 H 0.104 0.896 21 C -0.195 4.195 22 N -0.568 5.568 23 Si 0.807 3.193 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.180 1.180 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.127 0.873 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.129 0.871 38 H 0.079 0.921 39 H 0.220 0.780 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.249 0.751 43 H 0.011 0.989 44 H 0.011 0.989 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.274 28.080 0.020 28.571 hybrid contribution -0.245 -2.263 -0.011 2.276 sum -5.518 25.816 0.008 26.400 Atomic orbital electron populations 1.20387 0.84369 1.04352 1.04228 1.22795 0.98193 0.88041 0.95024 1.77122 0.86773 1.22335 1.26759 1.49176 1.05972 1.04496 1.52047 1.21361 0.81073 0.90506 0.98646 1.22299 1.02071 1.04022 0.93241 1.21910 1.03131 0.92476 1.02063 1.22336 0.98705 1.03383 0.97612 1.23479 0.99228 0.85769 0.92812 1.19367 0.93781 0.90245 1.28698 1.20237 0.83505 0.85132 0.71882 1.90775 1.17912 1.84762 1.48560 1.86577 1.39714 1.15375 1.84491 1.22713 0.93927 0.77698 1.07086 1.20656 0.90210 0.83716 0.76710 1.90666 1.25184 1.78932 1.51487 1.46043 1.11816 1.04653 1.72571 1.18624 0.84972 0.87338 0.94614 1.21617 0.94602 0.90261 1.52924 0.89636 1.26041 0.94835 1.04779 0.93893 1.70131 1.03191 1.33583 1.49918 0.85162 0.78459 0.77065 0.78566 1.19660 1.21034 1.17967 0.89283 0.89291 0.89697 0.92499 0.87313 0.91836 0.92579 0.87891 0.92056 0.91297 0.87052 0.92101 0.77966 0.85903 0.85908 0.75137 0.98924 0.98899 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.46 9.92 71.24 0.71 -0.75 16 2 C 0.13 3.07 7.27 43.53 0.32 3.39 16 3 N -0.31 -7.17 11.55 -46.65 -0.54 -7.70 16 4 N -0.34 -6.71 3.41 -306.06 -1.04 -7.75 16 5 C 0.16 2.09 1.23 3.60 0.00 2.10 16 6 C -0.16 -1.64 8.72 71.98 0.63 -1.01 16 7 C -0.14 -1.51 8.07 71.98 0.58 -0.93 16 8 C -0.16 -1.61 8.28 71.98 0.60 -1.01 16 9 C 0.14 3.13 10.43 84.30 0.88 4.01 16 10 C -0.31 -8.08 6.13 -20.16 -0.12 -8.21 16 11 C 0.55 16.12 7.95 70.20 0.56 16.67 16 12 O -0.53 -16.37 14.71 19.74 0.29 -16.08 16 13 O -0.35 -11.05 9.58 -50.26 -0.48 -11.53 16 14 C 0.06 1.85 5.95 71.24 0.42 2.27 16 15 C 0.50 20.02 7.91 87.66 0.69 20.72 16 16 O -0.58 -28.79 16.50 15.76 0.26 -28.53 16 17 N -0.70 -28.79 5.55 -466.78 -2.59 -31.38 16 18 C 0.27 14.32 5.43 85.63 0.46 14.79 16 19 C -0.56 -29.64 9.28 25.60 0.24 -29.40 16 20 H 0.09 4.10 7.60 -2.91 -0.02 4.07 16 21 C 0.00 0.23 5.46 84.65 0.46 0.70 16 22 N -0.93 -55.24 13.29 21.45 0.28 -54.95 16 23 Si 0.98 41.77 29.54 68.60 2.03 43.79 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 25 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 26 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 27 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.08 1.83 6.56 -2.39 -0.02 1.81 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.06 0.82 8.03 -2.38 -0.02 0.81 16 36 H 0.07 0.74 7.34 -2.39 -0.02 0.72 16 37 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.20 3.87 7.53 -2.91 -0.02 3.85 16 40 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 41 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 42 H 0.41 13.70 8.32 -92.71 -0.77 12.93 16 43 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 44 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 45 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -76.02 386.99 4.87 -71.15 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.23 Total: 19.65 kcal Atomic # 6 Polarization: 16.90 SS G_CDS: 6.43 Total: 23.33 kcal Atomic # 7 Polarization: -97.90 SS G_CDS: -3.89 Total: -101.79 kcal Atomic # 8 Polarization: -56.21 SS G_CDS: 0.07 Total: -56.14 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Total: -76.02 4.87 -71.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752188700.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.553 kcal (2) G-P(sol) polarization free energy of solvation -76.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds