Wall clock time and date at job start Tue Mar 31 2020 14:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00552 * 2 1 4 4 C 1.52999 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46953 * 184.99839 * 4 3 2 6 6 C 1.53003 * 109.47002 * 304.99354 * 4 3 2 7 7 C 1.52999 * 109.46958 * 185.00057 * 6 4 3 8 8 O 1.42902 * 109.46970 * 180.02562 * 7 6 4 9 9 N 1.46499 * 109.47526 * 64.99854 * 4 3 2 10 10 C 1.34775 * 120.00115 * 155.00121 * 9 4 3 11 11 O 1.21281 * 119.99609 * 359.97438 * 10 9 4 12 12 C 1.50700 * 120.00122 * 180.02562 * 10 9 4 13 13 C 1.50693 * 109.47031 * 179.97438 * 12 10 9 14 14 C 1.38306 * 119.93360 * 269.72610 * 13 12 10 15 15 C 1.38094 * 120.06889 * 179.73143 * 14 13 12 16 16 C 1.38873 * 119.93286 * 0.55951 * 15 14 13 17 17 O 1.35750 * 120.07359 * 179.68358 * 16 15 14 18 18 C 1.34828 * 117.00620 * 174.49044 * 17 16 15 19 19 H 1.08004 * 119.99496 * 5.06274 * 18 17 16 20 20 C 1.38650 * 120.00377 * 185.05980 * 18 17 16 21 21 N 1.31562 * 120.00099 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00217 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47111 * 60.00026 * 22 20 18 24 24 H 1.48495 * 109.47335 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47213 * 300.00247 * 22 20 18 26 26 C 1.38880 * 119.86114 * 359.71804 * 16 15 14 27 27 C 1.38096 * 119.93150 * 359.97438 * 26 16 15 28 28 H 1.08998 * 109.47186 * 59.99409 * 1 2 3 29 29 H 1.09000 * 109.47588 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46356 * 299.99966 * 1 2 3 31 31 H 1.08992 * 109.47227 * 60.00232 * 3 2 1 32 32 H 1.09006 * 109.46908 * 300.00179 * 3 2 1 33 33 H 1.08994 * 109.47127 * 305.00928 * 6 4 3 34 34 H 1.09001 * 109.46660 * 65.00450 * 6 4 3 35 35 H 1.08993 * 109.47433 * 300.00163 * 7 6 4 36 36 H 1.09001 * 109.47114 * 60.00671 * 7 6 4 37 37 H 0.96696 * 114.00307 * 180.02562 * 8 7 6 38 38 H 0.96998 * 119.99587 * 334.72459 * 9 4 3 39 39 H 1.08994 * 109.46743 * 300.00174 * 12 10 9 40 40 H 1.08998 * 109.47009 * 59.99963 * 12 10 9 41 41 H 1.08001 * 119.95937 * 359.97438 * 14 13 12 42 42 H 1.08005 * 120.03310 * 180.27772 * 15 14 13 43 43 H 0.96991 * 119.99901 * 180.02562 * 21 20 18 44 44 H 1.08006 * 120.03257 * 179.97438 * 26 16 15 45 45 H 1.08001 * 119.96500 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1844 -0.0006 5 1 3.9787 2.1762 0.0889 6 6 3.9790 0.3192 1.1808 7 6 5.5071 0.3002 1.2537 8 8 5.9213 -0.5084 2.3568 9 7 3.9758 0.5641 -1.2527 10 6 5.2196 0.7941 -1.7178 11 8 5.9743 1.5150 -1.1000 12 6 5.6723 0.1564 -3.0060 13 6 7.0907 0.5715 -3.3007 14 6 7.3357 1.7066 -4.0518 15 6 8.6345 2.0926 -4.3188 16 6 9.6950 1.3333 -3.8421 17 8 10.9727 1.7065 -4.1083 18 6 11.9541 0.9920 -3.5216 19 1 11.7099 0.1155 -2.9398 20 6 13.2767 1.3824 -3.6653 21 7 13.5742 2.4503 -4.3738 22 14 14.6365 0.3920 -2.8531 23 1 14.6143 -0.9987 -3.3735 24 1 15.9506 1.0129 -3.1575 25 1 14.4254 0.3739 -1.3833 26 6 9.4456 0.1907 -3.0929 27 6 8.1447 -0.1865 -2.8239 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.6888 1.8463 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.5761 0.7326 2.1053 34 1 3.6091 -0.6972 1.0457 35 1 5.9100 -0.1132 0.3292 36 1 5.8771 1.3166 1.3888 37 1 6.8806 -0.5655 2.4643 38 1 3.3734 -0.0154 -1.7448 39 1 5.6229 -0.9283 -2.9115 40 1 5.0230 0.4802 -3.8194 41 1 6.5105 2.2939 -4.4266 42 1 8.8252 2.9817 -4.9017 43 1 14.4994 2.7232 -4.4746 44 1 10.2683 -0.4021 -2.7211 45 1 7.9502 -1.0747 -2.2411 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755996694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:51 Heat of formation + Delta-G solvation = -166.926315 kcal Electronic energy + Delta-G solvation = -27052.619191 eV Core-core repulsion = 23034.860378 eV Total energy + Delta-G solvation = -4017.758813 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.27588 -40.57317 -39.06465 -38.20392 -37.76880 -36.02535 -34.39310 -33.29085 -32.03707 -31.74455 -29.66546 -28.15710 -27.13012 -26.72450 -24.13048 -23.61834 -22.90346 -21.68723 -21.25883 -19.83179 -18.84610 -18.47609 -18.05752 -17.76914 -16.94224 -16.67234 -16.48119 -16.37563 -16.15739 -15.86262 -15.66441 -15.50878 -15.23837 -14.99621 -14.74919 -14.45040 -14.39439 -14.17048 -13.76372 -13.56562 -13.14826 -12.94340 -12.80785 -12.79404 -12.55173 -12.44354 -12.28312 -12.22877 -12.13660 -12.07780 -11.77700 -11.17090 -10.94764 -10.84196 -10.70126 -10.57392 -10.03953 -9.74723 -8.88249 -8.46769 -6.14894 0.63134 0.69333 1.33696 1.44761 1.50293 1.77016 2.17756 2.26803 2.82619 2.87902 3.18578 3.20055 3.54018 3.85334 3.91437 4.05965 4.08399 4.15816 4.20400 4.26769 4.38516 4.45623 4.50759 4.54720 4.59847 4.62562 4.63723 4.67543 4.74521 4.81399 4.84613 4.95751 4.99799 5.10928 5.15321 5.23339 5.32269 5.56406 5.58550 5.73066 5.80128 6.03488 6.21605 6.24845 6.68426 6.75136 6.97677 7.40316 7.79454 8.76443 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.020366 B = 0.002512 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.527512 B =11146.016617 C =12056.813677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.061 3.939 4 C 0.152 3.848 5 H 0.091 0.909 6 C -0.116 4.116 7 C 0.081 3.919 8 O -0.595 6.595 9 N -0.713 5.713 10 C 0.511 3.489 11 O -0.568 6.568 12 C -0.080 4.080 13 C -0.142 4.142 14 C -0.056 4.056 15 C -0.206 4.206 16 C 0.111 3.889 17 O -0.234 6.234 18 C -0.414 4.414 19 H 0.099 0.901 20 C -0.025 4.025 21 N -0.921 5.921 22 Si 1.019 2.981 23 H -0.256 1.256 24 H -0.270 1.270 25 H -0.260 1.260 26 C -0.243 4.243 27 C -0.060 4.060 28 H 0.052 0.948 29 H 0.093 0.907 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.037 0.963 36 H 0.034 0.966 37 H 0.392 0.608 38 H 0.417 0.583 39 H 0.123 0.877 40 H 0.130 0.870 41 H 0.147 0.853 42 H 0.111 0.889 43 H 0.273 0.727 44 H 0.116 0.884 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.131 -6.773 8.261 30.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C -0.016 4.016 4 C 0.047 3.953 5 H 0.108 0.892 6 C -0.155 4.155 7 C 0.003 3.997 8 O -0.403 6.403 9 N -0.367 5.367 10 C 0.299 3.701 11 O -0.447 6.447 12 C -0.119 4.119 13 C -0.143 4.143 14 C -0.074 4.074 15 C -0.225 4.225 16 C 0.061 3.939 17 O -0.141 6.141 18 C -0.490 4.490 19 H 0.117 0.883 20 C -0.222 4.222 21 N -0.560 5.560 22 Si 0.838 3.162 23 H -0.180 1.180 24 H -0.195 1.195 25 H -0.184 1.184 26 C -0.263 4.263 27 C -0.078 4.078 28 H 0.071 0.929 29 H 0.111 0.889 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.241 0.759 38 H 0.254 0.746 39 H 0.141 0.859 40 H 0.148 0.852 41 H 0.165 0.835 42 H 0.129 0.871 43 H 0.081 0.919 44 H 0.134 0.866 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -27.886 -6.188 8.563 29.820 hybrid contribution 1.421 0.050 -0.036 1.422 sum -26.465 -6.138 8.526 28.474 Atomic orbital electron populations 1.22901 0.79420 1.03706 1.00902 1.87865 1.21318 1.27649 1.95627 1.22777 0.90497 0.85545 1.02763 1.20964 0.93570 0.97227 0.83517 0.89156 1.21792 0.93135 1.01860 0.98690 1.22303 0.96254 0.93180 0.87919 1.86336 1.29348 1.72770 1.51856 1.45945 1.14707 1.51188 1.24826 1.21073 0.81369 0.80584 0.87095 1.90756 1.54554 1.39085 1.60271 1.20528 0.92854 1.03035 0.95506 1.19227 0.94744 0.97448 1.02859 1.20865 0.94607 0.95563 0.96366 1.20441 0.91877 1.02005 1.08212 1.19939 0.85692 0.93957 0.94302 1.83935 1.11591 1.54747 1.63806 1.21764 0.85326 1.09799 1.32096 0.88326 1.26607 0.99932 0.98016 0.97634 1.70181 1.20281 1.25645 1.39858 0.84651 0.75317 0.77776 0.78475 1.17972 1.19479 1.18405 1.21209 0.98514 0.99598 1.06944 1.20893 0.90918 0.99133 0.96874 0.92893 0.88869 0.93378 0.90419 0.90789 0.90277 0.90708 0.94427 0.94794 0.75928 0.74562 0.85943 0.85184 0.83497 0.87075 0.91854 0.86628 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.43 16 2 O -0.41 -4.80 9.65 -148.98 -1.44 -6.24 16 3 C 0.06 0.63 5.68 71.98 0.41 1.04 16 4 C 0.15 2.44 2.66 44.99 0.12 2.56 16 5 H 0.09 1.72 7.58 -2.38 -0.02 1.70 16 6 C -0.12 -2.27 4.98 30.60 0.15 -2.12 16 7 C 0.08 2.05 5.65 71.98 0.41 2.46 16 8 O -0.60 -15.03 13.66 -148.98 -2.03 -17.06 16 9 N -0.71 -11.15 5.01 -442.53 -2.22 -13.37 16 10 C 0.51 11.53 6.39 87.66 0.56 12.09 16 11 O -0.57 -18.47 13.17 -3.03 -0.04 -18.51 16 12 C -0.08 -1.55 5.83 29.10 0.17 -1.39 16 13 C -0.14 -4.43 4.38 -19.83 -0.09 -4.52 16 14 C -0.06 -1.94 9.69 22.25 0.22 -1.73 16 15 C -0.21 -9.23 9.99 22.39 0.22 -9.00 16 16 C 0.11 5.82 6.65 22.58 0.15 5.97 16 17 O -0.23 -14.66 9.76 -22.72 -0.22 -14.88 16 18 C -0.41 -24.99 9.49 67.92 0.64 -24.35 16 19 H 0.10 5.49 5.20 -2.91 -0.02 5.48 16 20 C -0.02 -1.45 5.49 84.83 0.47 -0.98 16 21 N -0.92 -58.05 13.67 21.61 0.30 -57.75 16 22 Si 1.02 44.16 29.55 68.60 2.03 46.19 16 23 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 25 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 26 C -0.24 -11.17 9.17 22.39 0.21 -10.96 16 27 C -0.06 -2.16 9.69 22.25 0.22 -1.95 16 28 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.07 1.55 7.73 -2.39 -0.02 1.53 16 35 H 0.04 1.05 5.65 -2.39 -0.01 1.04 16 36 H 0.03 0.96 7.85 -2.39 -0.02 0.94 16 37 H 0.39 7.37 9.12 -74.06 -0.68 6.69 16 38 H 0.42 4.35 8.38 -92.71 -0.78 3.57 16 39 H 0.12 1.77 8.08 -2.39 -0.02 1.75 16 40 H 0.13 1.68 8.08 -2.39 -0.02 1.66 16 41 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 42 H 0.11 4.93 8.06 -2.91 -0.02 4.90 16 43 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 44 H 0.12 5.40 5.64 -2.91 -0.02 5.38 16 45 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -83.26 377.19 1.04 -82.22 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: -0.43 Total: 30.87 kcal Atomic # 6 Polarization: -36.56 SS G_CDS: 5.10 Total: -31.46 kcal Atomic # 7 Polarization: -69.20 SS G_CDS: -1.92 Total: -71.12 kcal Atomic # 8 Polarization: -52.96 SS G_CDS: -3.73 Total: -56.69 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -83.26 1.04 -82.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755996694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.707 kcal (2) G-P(sol) polarization free energy of solvation -83.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds