Wall clock time and date at job start Tue Mar 31 2020 14:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00356 * 2 1 4 4 C 1.52995 * 109.47541 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47584 * 175.00081 * 4 3 2 6 6 C 1.53006 * 109.47236 * 54.99773 * 4 3 2 7 7 C 1.53004 * 109.47014 * 175.00196 * 6 4 3 8 8 O 1.42897 * 109.46915 * 180.02562 * 7 6 4 9 9 N 1.46507 * 109.47175 * 294.99843 * 4 3 2 10 10 C 1.34777 * 120.00195 * 205.00223 * 9 4 3 11 11 O 1.21281 * 119.99880 * 359.97438 * 10 9 4 12 12 C 1.50699 * 120.00064 * 179.97438 * 10 9 4 13 13 C 1.50697 * 109.47240 * 179.97438 * 12 10 9 14 14 C 1.38299 * 119.93341 * 269.73206 * 13 12 10 15 15 C 1.38102 * 120.06816 * 179.72642 * 14 13 12 16 16 C 1.38880 * 119.93030 * 0.56236 * 15 14 13 17 17 O 1.35749 * 120.06599 * 179.68199 * 16 15 14 18 18 C 1.34839 * 116.99473 * 174.49055 * 17 16 15 19 19 H 1.07996 * 120.00074 * 5.05660 * 18 17 16 20 20 C 1.38648 * 119.99788 * 185.05906 * 18 17 16 21 21 N 1.31562 * 119.99974 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99973 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47061 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47097 * 120.00122 * 22 20 18 25 25 H 1.48503 * 109.47180 * 239.99771 * 22 20 18 26 26 C 1.38879 * 119.85965 * 359.70851 * 16 15 14 27 27 C 1.38097 * 119.93561 * 0.02562 * 26 16 15 28 28 H 1.09001 * 109.46990 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47020 * 60.00391 * 1 2 3 30 30 H 1.08999 * 109.47206 * 300.00084 * 1 2 3 31 31 H 1.08999 * 109.47135 * 300.00207 * 3 2 1 32 32 H 1.09004 * 109.47232 * 59.99329 * 3 2 1 33 33 H 1.08999 * 109.46898 * 294.99980 * 6 4 3 34 34 H 1.08995 * 109.46738 * 55.00016 * 6 4 3 35 35 H 1.08998 * 109.46651 * 299.99919 * 7 6 4 36 36 H 1.08995 * 109.47042 * 60.00053 * 7 6 4 37 37 H 0.96697 * 114.00086 * 179.97438 * 8 7 6 38 38 H 0.96993 * 119.99802 * 24.99797 * 9 4 3 39 39 H 1.08998 * 109.47287 * 300.00243 * 12 10 9 40 40 H 1.09006 * 109.46661 * 59.99829 * 12 10 9 41 41 H 1.08002 * 119.96329 * 359.97248 * 14 13 12 42 42 H 1.07999 * 120.03464 * 180.26888 * 15 14 13 43 43 H 0.97004 * 120.00018 * 180.02562 * 21 20 18 44 44 H 1.07999 * 120.03210 * 179.97438 * 26 16 15 45 45 H 1.07993 * 119.97158 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.9786 2.1765 -0.0889 6 6 3.9790 0.3193 -1.1806 7 6 5.5072 0.3005 -1.2536 8 8 5.9215 -0.5072 -2.3572 9 7 3.9757 0.5644 1.2528 10 6 5.2195 0.7946 1.7180 11 8 5.9745 1.5148 1.0998 12 6 5.6721 0.1571 3.0063 13 6 7.0908 0.5713 3.3005 14 6 8.1441 -0.1907 2.8286 15 6 9.4455 0.1894 3.0918 16 6 9.6957 1.3317 3.8409 17 8 10.9737 1.7043 4.1067 18 6 11.1489 2.8819 4.7398 19 1 10.2925 3.4424 5.0842 20 6 12.4285 3.3731 4.9485 21 7 13.4718 2.6905 4.5284 22 14 12.6712 5.0048 5.8249 23 1 11.3485 5.5701 6.1936 24 1 13.4777 4.7916 7.0535 25 1 13.3805 5.9494 4.9250 26 6 8.6357 2.0916 4.3181 27 6 7.3367 1.7093 4.0469 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 1.6885 1.8464 0.8899 33 1 3.6092 -0.6971 -1.0455 34 1 3.5762 0.7326 -2.1052 35 1 5.8769 1.3169 -1.3886 36 1 5.9100 -0.1128 -0.3289 37 1 6.8808 -0.5642 -2.4646 38 1 3.3719 -0.0119 1.7470 39 1 5.0226 0.4807 3.8197 40 1 5.6228 -0.9278 2.9117 41 1 7.9488 -1.0817 2.2504 42 1 10.2677 -0.4037 2.7193 43 1 14.3671 3.0340 4.6747 44 1 8.8271 2.9802 4.9013 45 1 6.5120 2.3001 4.4173 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755996706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:54 Heat of formation + Delta-G solvation = -167.102497 kcal Electronic energy + Delta-G solvation = -27015.615458 eV Core-core repulsion = 22997.849006 eV Total energy + Delta-G solvation = -4017.766453 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.27569 -40.57396 -39.06548 -38.20454 -37.76341 -36.02424 -34.39389 -33.29073 -32.03161 -31.75039 -29.66232 -28.15948 -27.13639 -26.72230 -24.12548 -23.62198 -22.90518 -21.68407 -21.25811 -19.83605 -18.84846 -18.47030 -18.05743 -17.77666 -16.94208 -16.66928 -16.47516 -16.31523 -16.21705 -15.87042 -15.62972 -15.49041 -15.35124 -14.89542 -14.75044 -14.49385 -14.38690 -14.14830 -13.78943 -13.56509 -13.15828 -12.97148 -12.80392 -12.77172 -12.54602 -12.46839 -12.27832 -12.21897 -12.09881 -12.07836 -11.77134 -11.16618 -10.94211 -10.84948 -10.70537 -10.57560 -10.03933 -9.74852 -8.88360 -8.47189 -6.15193 0.62915 0.69116 1.33829 1.42524 1.52628 1.77050 2.17370 2.26688 2.82441 2.87744 3.18693 3.20395 3.53606 3.85243 3.91465 4.06651 4.08819 4.15304 4.20789 4.26808 4.38669 4.45695 4.50939 4.54917 4.59793 4.62346 4.63634 4.67673 4.74329 4.81989 4.84361 4.95761 5.00381 5.10568 5.15619 5.23953 5.32201 5.56401 5.58368 5.73051 5.80024 6.03594 6.21400 6.24663 6.68440 6.76383 6.97558 7.40312 7.79415 8.76527 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.020639 B = 0.002406 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.340339 B =11632.573793 C =12076.447347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.061 3.939 4 C 0.152 3.848 5 H 0.090 0.910 6 C -0.116 4.116 7 C 0.081 3.919 8 O -0.595 6.595 9 N -0.713 5.713 10 C 0.511 3.489 11 O -0.568 6.568 12 C -0.080 4.080 13 C -0.141 4.141 14 C -0.058 4.058 15 C -0.206 4.206 16 C 0.111 3.889 17 O -0.235 6.235 18 C -0.412 4.412 19 H 0.100 0.900 20 C -0.026 4.026 21 N -0.922 5.922 22 Si 1.020 2.980 23 H -0.252 1.252 24 H -0.266 1.266 25 H -0.269 1.269 26 C -0.243 4.243 27 C -0.059 4.059 28 H 0.093 0.907 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.033 0.967 36 H 0.039 0.961 37 H 0.392 0.608 38 H 0.417 0.583 39 H 0.128 0.872 40 H 0.125 0.875 41 H 0.143 0.857 42 H 0.110 0.890 43 H 0.272 0.728 44 H 0.116 0.884 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.055 -4.711 -6.928 30.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.016 4.016 4 C 0.047 3.953 5 H 0.108 0.892 6 C -0.155 4.155 7 C 0.004 3.996 8 O -0.403 6.403 9 N -0.367 5.367 10 C 0.299 3.701 11 O -0.447 6.447 12 C -0.119 4.119 13 C -0.143 4.143 14 C -0.076 4.076 15 C -0.225 4.225 16 C 0.061 3.939 17 O -0.141 6.141 18 C -0.488 4.488 19 H 0.117 0.883 20 C -0.223 4.223 21 N -0.560 5.560 22 Si 0.839 3.161 23 H -0.175 1.175 24 H -0.191 1.191 25 H -0.194 1.194 26 C -0.263 4.263 27 C -0.077 4.077 28 H 0.112 0.888 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.241 0.759 38 H 0.254 0.746 39 H 0.146 0.854 40 H 0.143 0.857 41 H 0.161 0.839 42 H 0.128 0.872 43 H 0.081 0.919 44 H 0.134 0.866 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -28.649 -4.527 -7.488 29.956 hybrid contribution 1.126 0.783 0.507 1.462 sum -27.524 -3.744 -6.981 28.641 Atomic orbital electron populations 1.22901 0.79426 1.03717 1.00890 1.87865 1.21311 1.27621 1.95623 1.22776 0.90529 0.85554 1.02740 1.20964 0.93544 0.97220 0.83556 0.89216 1.21788 0.93194 1.01850 0.98628 1.22300 0.96211 0.93182 0.87952 1.86336 1.29365 1.72818 1.51794 1.45945 1.14650 1.51340 1.24734 1.21072 0.81393 0.80568 0.87089 1.90756 1.54568 1.39074 1.60265 1.20531 0.92812 1.03158 0.95427 1.19226 0.94866 0.97208 1.02952 1.20837 0.90312 0.99291 0.97115 1.20424 0.98326 0.98325 1.05448 1.19933 0.85103 0.94766 0.94062 1.83940 1.22722 1.37980 1.69502 1.21851 0.94707 0.96397 1.35865 0.88252 1.26619 0.93542 1.03725 0.98390 1.70199 0.99082 1.40444 1.46310 0.84513 0.79422 0.74657 0.77485 1.17516 1.19094 1.19423 1.21223 0.93450 1.03272 1.08309 1.20919 0.94978 0.95523 0.96241 0.88844 0.93377 0.92922 0.90421 0.90848 0.90671 0.90307 0.94842 0.94320 0.75902 0.74561 0.85419 0.85697 0.83894 0.87168 0.91869 0.86585 0.84353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.43 16 2 O -0.40 -4.79 9.65 -148.98 -1.44 -6.23 16 3 C 0.06 0.63 5.68 71.98 0.41 1.04 16 4 C 0.15 2.44 2.66 44.99 0.12 2.56 16 5 H 0.09 1.72 7.58 -2.38 -0.02 1.70 16 6 C -0.12 -2.25 4.98 30.60 0.15 -2.10 16 7 C 0.08 2.03 5.65 71.98 0.41 2.44 16 8 O -0.60 -14.81 13.66 -148.98 -2.03 -16.84 16 9 N -0.71 -11.14 5.01 -442.51 -2.22 -13.36 16 10 C 0.51 11.52 6.39 87.66 0.56 12.08 16 11 O -0.57 -18.45 13.17 -3.03 -0.04 -18.49 16 12 C -0.08 -1.55 5.83 29.10 0.17 -1.38 16 13 C -0.14 -4.42 4.38 -19.83 -0.09 -4.51 16 14 C -0.06 -2.01 9.69 22.25 0.22 -1.80 16 15 C -0.21 -9.26 9.99 22.39 0.22 -9.04 16 16 C 0.11 5.83 6.65 22.58 0.15 5.98 16 17 O -0.23 -14.70 9.76 -22.82 -0.22 -14.92 16 18 C -0.41 -24.86 9.49 67.92 0.64 -24.22 16 19 H 0.10 5.54 5.20 -2.91 -0.02 5.52 16 20 C -0.03 -1.51 5.49 84.83 0.47 -1.04 16 21 N -0.92 -58.09 13.67 21.61 0.30 -57.79 16 22 Si 1.02 44.13 29.55 68.60 2.03 46.16 16 23 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 24 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 26 C -0.24 -11.12 9.17 22.39 0.21 -10.91 16 27 C -0.06 -2.09 9.69 22.25 0.22 -1.87 16 28 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.07 1.54 7.73 -2.39 -0.02 1.52 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.03 0.94 7.85 -2.39 -0.02 0.92 16 36 H 0.04 1.06 5.64 -2.39 -0.01 1.05 16 37 H 0.39 7.18 9.12 -74.06 -0.68 6.51 16 38 H 0.42 4.34 8.38 -92.71 -0.78 3.56 16 39 H 0.13 1.70 8.08 -2.39 -0.02 1.68 16 40 H 0.13 1.74 8.08 -2.38 -0.02 1.72 16 41 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 42 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 43 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 44 H 0.12 5.40 5.64 -2.91 -0.02 5.38 16 45 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -83.28 377.19 1.04 -82.24 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: -0.43 Total: 30.60 kcal Atomic # 6 Polarization: -36.46 SS G_CDS: 5.10 Total: -31.36 kcal Atomic # 7 Polarization: -69.23 SS G_CDS: -1.92 Total: -71.15 kcal Atomic # 8 Polarization: -52.75 SS G_CDS: -3.74 Total: -56.48 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -83.28 1.04 -82.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755996706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.867 kcal (2) G-P(sol) polarization free energy of solvation -83.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds