Wall clock time and date at job start Tue Mar 31 2020 13:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35890 * 126.05172 * 2 1 4 4 C 1.35830 * 107.54251 * 180.02562 * 3 2 1 5 5 N 1.40465 * 126.09038 * 179.97438 * 4 3 2 6 6 N 1.40104 * 119.99654 * 179.97438 * 5 4 3 7 7 C 1.29901 * 119.99734 * 179.97438 * 6 5 4 8 8 C 1.47300 * 120.00030 * 180.02562 * 7 6 5 9 9 C 1.35935 * 126.69342 * 180.02562 * 8 7 6 10 10 N 1.36546 * 109.67952 * 179.97438 * 9 8 7 11 11 C 1.46501 * 124.89570 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.47296 * 265.02355 * 11 10 9 13 13 H 1.08005 * 119.99488 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00296 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00579 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 119.99799 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47211 * 89.99619 * 16 14 12 18 18 H 1.48502 * 109.46976 * 209.99451 * 16 14 12 19 19 H 1.48495 * 109.47149 * 329.99568 * 16 14 12 20 20 C 1.37818 * 110.21037 * 0.02562 * 10 9 8 21 21 C 1.39177 * 133.24439 * 180.02562 * 20 10 9 22 22 C 1.37762 * 119.78641 * 179.97438 * 21 20 10 23 23 C 1.38789 * 120.63200 * 0.02562 * 22 21 20 24 24 C 1.36712 * 120.46918 * 0.02562 * 23 22 21 25 25 C 1.39365 * 119.79702 * 359.66741 * 24 23 22 26 26 C 1.40315 * 107.82162 * 359.97438 * 4 3 2 27 27 N 1.30827 * 108.34568 * 0.02562 * 26 4 3 28 28 H 1.08999 * 109.46751 * 90.00254 * 1 2 3 29 29 H 1.09003 * 109.47236 * 210.00059 * 1 2 3 30 30 H 1.09000 * 109.46853 * 330.00208 * 1 2 3 31 31 H 1.08001 * 126.23070 * 0.02985 * 3 2 1 32 32 H 0.96997 * 120.00492 * 359.97438 * 5 4 3 33 33 H 1.07997 * 120.00107 * 0.02562 * 7 6 5 34 34 H 1.08000 * 125.16183 * 359.95992 * 9 8 7 35 35 H 1.09002 * 109.47313 * 25.02638 * 11 10 9 36 36 H 1.08997 * 109.47259 * 145.02763 * 11 10 9 37 37 H 0.96998 * 120.00716 * 180.02562 * 15 14 12 38 38 H 1.08004 * 120.10844 * 359.97438 * 21 20 10 39 39 H 1.07996 * 119.68693 * 180.02562 * 22 21 20 40 40 H 1.08000 * 119.76584 * 179.97438 * 23 22 21 41 41 H 1.08001 * 120.10384 * 179.97438 * 24 23 22 42 42 H 1.07997 * 125.83088 * 179.74198 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2648 1.0987 0.0000 4 6 3.5528 0.6675 -0.0006 5 7 4.6978 1.4812 -0.0013 6 7 5.9716 0.8979 -0.0013 7 6 7.0305 1.6503 -0.0024 8 6 8.3698 1.0372 -0.0030 9 6 9.5621 1.6901 -0.0037 10 7 10.5829 0.7833 -0.0035 11 6 12.0075 1.1250 -0.0047 12 6 12.5240 1.1211 -1.4204 13 1 11.8575 0.8878 -2.2377 14 6 13.8469 1.4164 -1.6725 15 7 14.2975 1.4135 -2.9080 16 14 14.9994 1.8206 -0.2590 17 1 15.6306 0.5715 0.2377 18 1 16.0534 2.7540 -0.7312 19 1 14.2303 2.4575 0.8401 20 6 10.0800 -0.4999 -0.0032 21 6 10.6759 -1.7576 -0.0025 22 6 9.8885 -2.8880 -0.0019 23 6 8.5044 -2.7856 -0.0025 24 6 7.8999 -1.5594 -0.0043 25 6 8.6785 -0.4035 0.0015 26 6 3.5360 -0.7356 -0.0003 27 7 2.2894 -1.1324 -0.0002 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.9361 2.1274 0.0005 32 1 4.6066 2.4468 -0.0018 33 1 6.9289 2.7255 -0.0030 34 1 9.6835 2.7632 -0.0046 35 1 12.1439 2.1157 0.4291 36 1 12.5576 0.3915 0.5847 37 1 15.2283 1.6208 -3.0854 38 1 11.7522 -1.8471 -0.0024 39 1 10.3526 -3.8631 -0.0009 40 1 7.9005 -3.6810 -0.0024 41 1 6.8224 -1.4866 -0.0052 42 1 4.4039 -1.3783 -0.0046 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761865780.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:22 Heat of formation + Delta-G solvation = 171.095742 kcal Electronic energy + Delta-G solvation = -25179.455769 eV Core-core repulsion = 21548.249114 eV Total energy + Delta-G solvation = -3631.206655 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.144 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.05393 -41.93014 -37.91298 -37.83271 -35.43252 -34.49763 -33.59034 -32.43237 -31.30714 -30.02872 -29.61500 -28.46515 -26.83197 -24.86821 -23.78082 -23.19679 -22.23696 -21.82122 -21.20038 -20.12681 -19.18841 -18.33996 -17.95603 -17.48363 -16.82346 -16.42102 -16.30092 -16.14151 -16.05895 -15.38434 -15.21104 -14.85723 -14.76027 -14.41266 -14.25527 -14.04361 -13.71492 -13.63421 -13.37518 -13.28606 -13.24297 -13.07809 -12.60293 -12.47499 -12.32441 -11.86995 -11.83223 -11.74452 -11.64583 -11.07396 -10.88425 -10.79675 -10.30239 -10.09932 -8.97383 -8.59115 -8.38160 -7.71573 -6.48911 0.22059 0.72678 0.92991 1.12418 1.36341 1.37268 1.47058 1.54192 1.98283 2.05883 2.27499 2.31110 2.50921 2.94764 3.18710 3.83869 3.87413 3.91181 3.97923 4.12067 4.28642 4.35166 4.40012 4.44424 4.50978 4.53217 4.64640 4.71745 4.77128 4.81772 4.86285 4.90040 5.02036 5.04574 5.27818 5.29122 5.42074 5.57783 5.73263 5.85721 5.96904 6.03804 6.09460 6.13447 6.49822 6.52264 6.52852 6.62526 6.74998 7.16237 7.59892 8.78233 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.022334 B = 0.002494 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.388304 B =11224.536521 C =12060.323782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.377 5.377 3 C -0.003 4.003 4 C 0.047 3.953 5 N -0.574 5.574 6 N -0.265 5.265 7 C 0.133 3.867 8 C -0.170 4.170 9 C 0.100 3.900 10 N -0.460 5.460 11 C 0.216 3.784 12 C -0.549 4.549 13 H 0.026 0.974 14 C 0.019 3.981 15 N -0.939 5.939 16 Si 0.949 3.051 17 H -0.266 1.266 18 H -0.280 1.280 19 H -0.234 1.234 20 C 0.069 3.931 21 C -0.140 4.140 22 C -0.109 4.109 23 C -0.153 4.153 24 C -0.076 4.076 25 C -0.103 4.103 26 C 0.019 3.981 27 N -0.314 5.314 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.212 0.788 32 H 0.396 0.604 33 H 0.143 0.857 34 H 0.200 0.800 35 H 0.069 0.931 36 H 0.044 0.956 37 H 0.272 0.728 38 H 0.110 0.890 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.130 0.870 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.969 1.849 9.970 25.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.164 5.164 3 C -0.151 4.151 4 C -0.059 4.059 5 N -0.302 5.302 6 N -0.072 5.072 7 C -0.077 4.077 8 C -0.180 4.180 9 C -0.034 4.034 10 N -0.138 5.138 11 C 0.096 3.904 12 C -0.587 4.587 13 H 0.045 0.955 14 C -0.181 4.181 15 N -0.577 5.577 16 Si 0.771 3.229 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.157 1.157 20 C -0.037 4.037 21 C -0.161 4.161 22 C -0.128 4.128 23 C -0.172 4.172 24 C -0.095 4.095 25 C -0.108 4.108 26 C -0.168 4.168 27 N -0.138 5.138 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.135 0.865 31 H 0.228 0.772 32 H 0.236 0.764 33 H 0.160 0.840 34 H 0.217 0.783 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.128 0.872 39 H 0.163 0.837 40 H 0.163 0.837 41 H 0.148 0.852 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -23.854 -0.029 9.862 25.812 hybrid contribution 1.887 1.991 -0.282 2.758 sum -21.968 1.962 9.580 24.046 Atomic orbital electron populations 1.22150 0.71426 1.05922 1.04444 1.48532 1.07566 1.02507 1.57822 1.22209 0.88280 0.94817 1.09839 1.17524 0.85845 0.90552 1.12012 1.44298 0.98364 1.05747 1.81793 1.74381 0.90534 1.28217 1.14041 1.23207 0.88471 0.97170 0.98861 1.18341 0.90739 0.90523 1.18396 1.22446 0.85104 0.96494 0.99405 1.44279 1.07264 1.04082 1.58135 1.19858 0.75765 0.98325 0.96484 1.21341 0.95902 1.49412 0.92030 0.95527 1.25850 0.99571 0.93922 0.98724 1.70044 1.16715 1.49162 1.21812 0.85698 0.78684 0.79215 0.79316 1.19100 1.20497 1.15691 1.18648 0.93360 0.86491 1.05210 1.20326 0.99735 0.90272 1.05759 1.21040 0.93904 0.97580 1.00276 1.20933 0.94612 0.97788 1.03867 1.20451 0.99708 0.90693 0.98603 1.19282 0.91320 0.94001 1.06189 1.23634 0.95154 0.94273 1.03709 1.77192 1.01536 1.10366 1.24711 0.89822 0.89308 0.86533 0.77167 0.76397 0.84027 0.78290 0.91328 0.93808 0.91933 0.87170 0.83670 0.83660 0.85218 0.80661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.83 11.48 127.77 1.47 2.29 16 2 N -0.38 -6.99 4.04 -368.33 -1.49 -8.48 16 3 C 0.00 -0.04 11.57 83.51 0.97 0.92 16 4 C 0.05 1.12 7.07 37.70 0.27 1.38 16 5 N -0.57 -13.21 6.51 -51.82 -0.34 -13.55 16 6 N -0.26 -7.53 9.90 -52.23 -0.52 -8.05 16 7 C 0.13 3.60 10.99 87.36 0.96 4.56 16 8 C -0.17 -5.75 6.26 -19.03 -0.12 -5.87 16 9 C 0.10 3.43 11.25 83.42 0.94 4.37 16 10 N -0.46 -19.00 2.75 -518.76 -1.43 -20.43 16 11 C 0.22 9.49 4.80 85.63 0.41 9.90 16 12 C -0.55 -30.08 9.94 25.60 0.25 -29.83 16 13 H 0.03 1.70 8.06 -2.91 -0.02 1.68 16 14 C 0.02 1.03 5.47 84.65 0.46 1.49 16 15 N -0.94 -56.32 13.96 21.44 0.30 -56.02 16 16 Si 0.95 39.85 27.47 68.60 1.88 41.73 16 17 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 18 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 19 H -0.23 -8.62 6.54 99.48 0.65 -7.97 16 20 C 0.07 2.88 6.80 38.97 0.26 3.15 16 21 C -0.14 -5.50 9.98 22.38 0.22 -5.28 16 22 C -0.11 -3.53 10.01 22.29 0.22 -3.31 16 23 C -0.15 -4.70 9.98 22.04 0.22 -4.48 16 24 C -0.08 -2.60 9.77 22.18 0.22 -2.39 16 25 C -0.10 -3.92 6.26 -20.07 -0.13 -4.05 16 26 C 0.02 0.52 11.61 85.35 0.99 1.51 16 27 N -0.31 -8.22 12.56 -56.73 -0.71 -8.93 16 28 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.21 1.65 8.06 -2.91 -0.02 1.63 16 32 H 0.40 6.65 8.78 -213.32 -1.87 4.78 16 33 H 0.14 2.72 8.02 -2.91 -0.02 2.70 16 34 H 0.20 5.19 8.06 -2.91 -0.02 5.17 16 35 H 0.07 2.70 7.17 -2.39 -0.02 2.68 16 36 H 0.04 1.87 7.57 -2.39 -0.02 1.85 16 37 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 38 H 0.11 4.38 8.06 -2.91 -0.02 4.35 16 39 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 40 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 41 H 0.13 4.16 7.23 -2.91 -0.02 4.14 16 42 H 0.18 4.86 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -76.18 369.11 4.44 -71.74 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: -0.88 Total: 27.61 kcal Atomic # 6 Polarization: -33.25 SS G_CDS: 7.62 Total: -25.63 kcal Atomic # 7 Polarization: -111.28 SS G_CDS: -4.18 Total: -115.46 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 1.88 Total: 41.73 kcal Total: -76.18 4.44 -71.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761865780.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 242.835 kcal (2) G-P(sol) polarization free energy of solvation -76.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds