Wall clock time and date at job start Tue Mar 31 2020 14:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38130 * 126.29576 * 2 1 4 4 C 1.47285 * 126.42305 * 0.05062 * 3 2 1 5 5 O 1.21523 * 120.00447 * 0.02562 * 4 3 2 6 6 O 1.34758 * 119.99632 * 180.02562 * 4 3 2 7 7 C 1.45201 * 117.00031 * 180.02562 * 6 4 3 8 8 C 1.50698 * 109.46926 * 179.97438 * 7 6 4 9 9 O 1.21283 * 120.00176 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00106 * 179.97438 * 8 7 6 11 11 C 1.46491 * 120.00325 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47353 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99822 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00237 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99979 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00183 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46840 * 59.99689 * 16 14 12 18 18 H 1.48495 * 109.47061 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46817 * 299.99992 * 16 14 12 20 20 C 1.41332 * 107.14428 * 180.02562 * 3 2 1 21 21 N 1.30429 * 108.01757 * 359.71727 * 20 3 2 22 22 N 1.34224 * 126.29357 * 180.02562 * 2 1 3 23 23 C 1.46492 * 125.74362 * 359.97438 * 22 2 1 24 24 C 1.52999 * 109.47631 * 90.00026 * 23 22 2 25 25 C 1.53006 * 109.46623 * 294.99736 * 24 23 22 26 26 C 1.52997 * 109.47317 * 174.99916 * 24 23 22 27 27 H 1.08993 * 109.47280 * 269.98228 * 1 2 3 28 28 H 1.09002 * 109.46990 * 29.98315 * 1 2 3 29 29 H 1.08999 * 109.46937 * 149.97368 * 1 2 3 30 30 H 1.09001 * 109.46551 * 299.99085 * 7 6 4 31 31 H 1.08997 * 109.47173 * 59.99592 * 7 6 4 32 32 H 0.97001 * 119.99546 * 0.02562 * 10 8 7 33 33 H 1.08996 * 109.47259 * 300.00152 * 11 10 8 34 34 H 1.08997 * 109.47314 * 60.00360 * 11 10 8 35 35 H 0.97007 * 120.00115 * 179.97438 * 15 14 12 36 36 H 1.08003 * 125.99641 * 179.97438 * 20 3 2 37 37 H 1.09001 * 109.47360 * 329.99330 * 23 22 2 38 38 H 1.09007 * 109.46783 * 209.99575 * 23 22 2 39 39 H 1.09001 * 109.47362 * 54.99184 * 24 23 22 40 40 H 1.09001 * 109.47002 * 179.97438 * 25 24 23 41 41 H 1.08993 * 109.46955 * 300.00075 * 25 24 23 42 42 H 1.09000 * 109.47050 * 59.99904 * 25 24 23 43 43 H 1.09001 * 109.46832 * 179.97438 * 26 24 23 44 44 H 1.09002 * 109.47153 * 299.99641 * 26 24 23 45 45 H 1.08996 * 109.46952 * 59.99813 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.1133 0.0000 4 6 1.8872 2.5197 0.0010 5 8 0.7018 2.7873 0.0025 6 8 2.8014 3.5096 0.0004 7 6 2.2982 4.8717 0.0021 8 6 3.4569 5.8352 0.0017 9 8 4.5948 5.4154 -0.0003 10 7 3.2288 7.1636 0.0025 11 6 4.3551 8.1003 0.0016 12 6 3.8329 9.5139 0.0034 13 1 2.7684 9.6963 0.0047 14 6 4.7140 10.5743 0.0035 15 7 6.0102 10.3522 0.0024 16 14 4.0666 12.3266 0.0051 17 1 3.2393 12.5475 1.2183 18 1 5.2084 13.2761 0.0055 19 1 3.2376 12.5491 -1.2067 20 6 3.6598 0.6496 -0.0006 21 7 3.6340 -0.6544 0.0052 22 7 2.3015 -1.0818 -0.0005 23 6 1.8498 -2.4754 -0.0006 24 6 1.6919 -2.9604 -1.4430 25 6 0.5728 -2.1720 -2.1265 26 6 1.3413 -4.4496 -1.4449 27 1 -0.3633 -0.0003 1.0276 28 1 -0.3633 0.8902 -0.5136 29 1 -0.3633 -0.8897 -0.5142 30 1 1.6892 5.0350 -0.8870 31 1 1.6916 5.0338 0.8930 32 1 2.3187 7.4993 0.0038 33 1 4.9641 7.9371 0.8907 34 1 4.9619 7.9380 -0.8892 35 1 6.6302 11.0984 0.0021 36 1 4.5461 1.2668 -0.0012 37 1 0.8913 -2.5467 0.5137 38 1 2.5846 -3.0955 0.5129 39 1 2.6265 -2.8064 -1.9825 40 1 0.4606 -2.5172 -3.1543 41 1 -0.3617 -2.3259 -1.5870 42 1 0.8226 -1.1110 -2.1251 43 1 1.2284 -4.7949 -2.4726 44 1 2.1386 -5.0112 -0.9580 45 1 0.4067 -4.6035 -0.9056 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767022442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:44 Heat of formation + Delta-G solvation = -61.250685 kcal Electronic energy + Delta-G solvation = -26437.889006 eV Core-core repulsion = 22457.005384 eV Total energy + Delta-G solvation = -3980.883623 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.87112 -40.06547 -38.57307 -37.08736 -36.16819 -34.20347 -32.92346 -32.38327 -32.14184 -29.41146 -28.17839 -27.51527 -26.79168 -26.42207 -23.25807 -22.40417 -21.79119 -20.43326 -19.91856 -19.67686 -18.03177 -17.35168 -16.68038 -16.58805 -16.20206 -15.98626 -15.48980 -15.10985 -14.94247 -14.72252 -14.54125 -14.19903 -13.96658 -13.65891 -13.44536 -13.27042 -13.01875 -12.87764 -12.84409 -12.68072 -12.41867 -12.29926 -11.95602 -11.77456 -11.70721 -11.59235 -11.29961 -11.07737 -11.01159 -10.88261 -10.58185 -10.39504 -10.32322 -9.66867 -9.42930 -9.12099 -8.95059 -8.75170 -7.94685 -6.17097 -4.24531 1.11370 1.89439 1.93025 2.64831 3.10597 3.24796 3.26105 3.30838 3.32357 3.95075 4.09421 4.10889 4.17777 4.35863 4.38479 4.46837 4.62092 4.77203 4.88146 4.96091 4.99943 5.06362 5.14714 5.18869 5.18909 5.24744 5.27431 5.32565 5.36122 5.40529 5.48971 5.53381 5.64511 5.70195 5.73595 6.21421 6.45924 6.52843 7.26222 7.29661 7.35458 7.49257 7.62952 7.86810 7.94880 8.54229 8.74370 9.00890 9.41767 10.92947 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.038379 B = 0.001880 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.398652 B =14893.482450 C =15305.466905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.169 3.831 3 C -0.284 4.284 4 C 0.545 3.455 5 O -0.524 6.524 6 O -0.324 6.324 7 C 0.052 3.948 8 C 0.500 3.500 9 O -0.534 6.534 10 N -0.707 5.707 11 C 0.251 3.749 12 C -0.546 4.546 13 H 0.064 0.936 14 C 0.064 3.936 15 N -0.885 5.885 16 Si 0.905 3.095 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.110 3.890 21 N -0.300 5.300 22 N -0.356 5.356 23 C 0.131 3.869 24 C -0.115 4.115 25 C -0.159 4.159 26 C -0.145 4.145 27 H 0.088 0.912 28 H 0.107 0.893 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.393 0.607 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.267 0.733 36 H 0.202 0.798 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.063 -28.576 -1.321 31.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.036 3.964 3 C -0.297 4.297 4 C 0.391 3.609 5 O -0.415 6.415 6 O -0.239 6.239 7 C -0.026 4.026 8 C 0.283 3.717 9 O -0.411 6.411 10 N -0.358 5.358 11 C 0.131 3.869 12 C -0.584 4.584 13 H 0.082 0.918 14 C -0.140 4.140 15 N -0.522 5.522 16 Si 0.732 3.268 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.078 4.078 21 N -0.118 5.118 22 N -0.135 5.135 23 C 0.010 3.990 24 C -0.134 4.134 25 C -0.216 4.216 26 C -0.203 4.203 27 H 0.106 0.894 28 H 0.125 0.875 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.225 0.775 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.218 0.782 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.670 -29.878 -1.308 32.479 hybrid contribution -1.181 2.042 0.016 2.359 sum -13.851 -27.836 -1.292 31.118 Atomic orbital electron populations 1.21024 0.86051 1.05639 1.04542 1.21421 0.94804 0.86211 0.93983 1.18997 0.93644 0.90109 1.26928 1.19948 0.83598 0.85178 0.72185 1.90780 1.17883 1.84656 1.48170 1.86597 1.38443 1.14985 1.83882 1.22824 0.96444 0.78786 1.04517 1.19909 0.89549 0.83586 0.78692 1.90705 1.22997 1.77917 1.49505 1.46352 1.12136 1.04702 1.72567 1.19160 0.83870 0.85837 0.98019 1.21180 0.93432 0.90218 1.53574 0.91817 1.24949 0.94720 0.99667 0.94632 1.69966 1.01367 1.32226 1.48631 0.86449 0.78359 0.83247 0.78699 1.20055 1.21066 1.20052 1.24326 0.97681 0.91441 0.94314 1.77284 0.95571 1.13298 1.25622 1.48526 1.04150 1.05941 1.54853 1.21981 1.01347 0.77177 0.98480 1.21555 1.00736 0.96246 0.94848 1.22131 0.97756 1.00617 1.01107 1.21775 1.01847 0.93862 1.02772 0.89377 0.87471 0.89961 0.88559 0.88560 0.77457 0.95264 0.95265 0.92339 0.78167 0.88537 0.88028 0.89878 0.91830 0.91931 0.92096 0.91724 0.92095 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 8.73 36.01 0.31 -0.54 16 2 C 0.17 1.74 5.76 -81.58 -0.47 1.27 16 3 C -0.28 -3.68 6.13 -105.08 -0.64 -4.32 16 4 C 0.55 8.06 7.95 34.41 0.27 8.34 16 5 O -0.52 -7.99 14.63 -19.28 -0.28 -8.27 16 6 O -0.32 -5.36 9.60 -47.33 -0.45 -5.81 16 7 C 0.05 0.81 5.95 36.00 0.21 1.02 16 8 C 0.50 10.12 7.91 -10.98 -0.09 10.04 16 9 O -0.53 -13.14 16.50 -14.11 -0.23 -13.37 16 10 N -0.71 -14.73 5.55 -61.48 -0.34 -15.07 16 11 C 0.25 6.61 5.43 -5.20 -0.03 6.59 16 12 C -0.55 -14.69 9.28 -34.44 -0.32 -15.01 16 13 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.88 -25.94 13.29 55.43 0.74 -25.21 16 16 Si 0.91 20.75 29.54 -169.99 -5.02 15.73 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 C 0.11 1.39 11.87 -16.97 -0.20 1.19 16 21 N -0.30 -3.62 12.50 30.87 0.39 -3.24 16 22 N -0.36 -3.41 3.41 -56.59 -0.19 -3.60 16 23 C 0.13 0.75 5.55 -4.05 -0.02 0.72 16 24 C -0.11 -0.58 3.13 -90.62 -0.28 -0.87 16 25 C -0.16 -0.83 7.58 37.16 0.28 -0.54 16 26 C -0.14 -0.47 9.19 37.16 0.34 -0.13 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.11 0.97 6.51 -51.93 -0.34 0.63 16 29 H 0.08 0.40 4.38 -51.93 -0.23 0.18 16 30 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.39 6.86 8.32 -40.82 -0.34 6.52 16 33 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.20 2.32 8.06 -52.48 -0.42 1.90 16 37 H 0.10 0.34 7.62 -51.93 -0.40 -0.05 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.06 0.23 6.85 -51.93 -0.36 -0.12 16 42 H 0.06 0.44 5.89 -51.93 -0.31 0.13 16 43 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 45 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 LS Contribution 379.33 15.07 5.72 5.72 Total: -1.00 -34.82 379.33 -6.98 -41.80 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.57 Total: 1.90 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: -0.73 Total: 9.43 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: 0.59 Total: -47.12 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.97 Total: -27.46 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.82 -6.98 -41.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767022442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.450 kcal (2) G-P(sol) polarization free energy of solvation -34.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds