Wall clock time and date at job start Tue Mar 31 2020 14:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38130 * 126.29576 * 2 1 4 4 C 1.47285 * 126.42305 * 0.05062 * 3 2 1 5 5 O 1.21523 * 120.00447 * 0.02562 * 4 3 2 6 6 O 1.34758 * 119.99632 * 180.02562 * 4 3 2 7 7 C 1.45201 * 117.00031 * 180.02562 * 6 4 3 8 8 C 1.50698 * 109.46926 * 179.97438 * 7 6 4 9 9 O 1.21283 * 120.00176 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00106 * 179.97438 * 8 7 6 11 11 C 1.46491 * 120.00325 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47353 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99822 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00237 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99979 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00183 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46840 * 59.99689 * 16 14 12 18 18 H 1.48495 * 109.47061 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46817 * 299.99992 * 16 14 12 20 20 C 1.41332 * 107.14428 * 180.02562 * 3 2 1 21 21 N 1.30429 * 108.01757 * 359.71727 * 20 3 2 22 22 N 1.34224 * 126.29357 * 180.02562 * 2 1 3 23 23 C 1.46492 * 125.74362 * 359.97438 * 22 2 1 24 24 C 1.52999 * 109.47631 * 90.00026 * 23 22 2 25 25 C 1.53006 * 109.46623 * 294.99736 * 24 23 22 26 26 C 1.52997 * 109.47317 * 174.99916 * 24 23 22 27 27 H 1.08993 * 109.47280 * 269.98228 * 1 2 3 28 28 H 1.09002 * 109.46990 * 29.98315 * 1 2 3 29 29 H 1.08999 * 109.46937 * 149.97368 * 1 2 3 30 30 H 1.09001 * 109.46551 * 299.99085 * 7 6 4 31 31 H 1.08997 * 109.47173 * 59.99592 * 7 6 4 32 32 H 0.97001 * 119.99546 * 0.02562 * 10 8 7 33 33 H 1.08996 * 109.47259 * 300.00152 * 11 10 8 34 34 H 1.08997 * 109.47314 * 60.00360 * 11 10 8 35 35 H 0.97007 * 120.00115 * 179.97438 * 15 14 12 36 36 H 1.08003 * 125.99641 * 179.97438 * 20 3 2 37 37 H 1.09001 * 109.47360 * 329.99330 * 23 22 2 38 38 H 1.09007 * 109.46783 * 209.99575 * 23 22 2 39 39 H 1.09001 * 109.47362 * 54.99184 * 24 23 22 40 40 H 1.09001 * 109.47002 * 179.97438 * 25 24 23 41 41 H 1.08993 * 109.46955 * 300.00075 * 25 24 23 42 42 H 1.09000 * 109.47050 * 59.99904 * 25 24 23 43 43 H 1.09001 * 109.46832 * 179.97438 * 26 24 23 44 44 H 1.09002 * 109.47153 * 299.99641 * 26 24 23 45 45 H 1.08996 * 109.46952 * 59.99813 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.1133 0.0000 4 6 1.8872 2.5197 0.0010 5 8 0.7018 2.7873 0.0025 6 8 2.8014 3.5096 0.0004 7 6 2.2982 4.8717 0.0021 8 6 3.4569 5.8352 0.0017 9 8 4.5948 5.4154 -0.0003 10 7 3.2288 7.1636 0.0025 11 6 4.3551 8.1003 0.0016 12 6 3.8329 9.5139 0.0034 13 1 2.7684 9.6963 0.0047 14 6 4.7140 10.5743 0.0035 15 7 6.0102 10.3522 0.0024 16 14 4.0666 12.3266 0.0051 17 1 3.2393 12.5475 1.2183 18 1 5.2084 13.2761 0.0055 19 1 3.2376 12.5491 -1.2067 20 6 3.6598 0.6496 -0.0006 21 7 3.6340 -0.6544 0.0052 22 7 2.3015 -1.0818 -0.0005 23 6 1.8498 -2.4754 -0.0006 24 6 1.6919 -2.9604 -1.4430 25 6 0.5728 -2.1720 -2.1265 26 6 1.3413 -4.4496 -1.4449 27 1 -0.3633 -0.0003 1.0276 28 1 -0.3633 0.8902 -0.5136 29 1 -0.3633 -0.8897 -0.5142 30 1 1.6892 5.0350 -0.8870 31 1 1.6916 5.0338 0.8930 32 1 2.3187 7.4993 0.0038 33 1 4.9641 7.9371 0.8907 34 1 4.9619 7.9380 -0.8892 35 1 6.6302 11.0984 0.0021 36 1 4.5461 1.2668 -0.0012 37 1 0.8913 -2.5467 0.5137 38 1 2.5846 -3.0955 0.5129 39 1 2.6265 -2.8064 -1.9825 40 1 0.4606 -2.5172 -3.1543 41 1 -0.3617 -2.3259 -1.5870 42 1 0.8226 -1.1110 -2.1251 43 1 1.2284 -4.7949 -2.4726 44 1 2.1386 -5.0112 -0.9580 45 1 0.4067 -4.6035 -0.9056 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767022442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:44 Heat of formation + Delta-G solvation = -84.340687 kcal Electronic energy + Delta-G solvation = -26438.890264 eV Core-core repulsion = 22457.005384 eV Total energy + Delta-G solvation = -3981.884880 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.72248 -41.31083 -40.20802 -37.59392 -37.38917 -36.15771 -34.39872 -33.64555 -32.90813 -30.87423 -29.19627 -28.29503 -27.79189 -27.31276 -24.78865 -23.88497 -22.51690 -21.61526 -21.22026 -20.47424 -19.23087 -18.88838 -17.87953 -17.76014 -17.49719 -16.90995 -16.83716 -16.74425 -16.03984 -15.98099 -15.56477 -15.46583 -14.72467 -14.65422 -14.36126 -14.25148 -14.04762 -13.88388 -13.87666 -13.68830 -13.57898 -13.47468 -13.02944 -12.94268 -12.77653 -12.66992 -12.27328 -12.22918 -11.99364 -11.91693 -11.82150 -11.70770 -11.51518 -11.45439 -10.87866 -10.79237 -10.43742 -9.90872 -9.84299 -8.28000 -6.44840 0.23292 0.93323 1.10339 1.44680 1.49074 1.52634 1.57969 1.58584 2.07873 2.36446 2.63864 3.07035 3.41230 3.47442 3.69108 3.71979 3.78438 3.84247 3.97833 4.08341 4.11960 4.13386 4.35142 4.43249 4.53415 4.57137 4.63849 4.76510 4.77971 4.90124 4.97273 5.02714 5.09664 5.17668 5.23561 5.25197 5.32977 5.36107 5.40114 5.43965 5.65215 5.81662 5.83448 6.40859 6.63922 6.70472 6.82981 7.22253 7.38405 8.83846 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.038379 B = 0.001880 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.398652 B =14893.482450 C =15305.466905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.183 3.817 3 C -0.317 4.317 4 C 0.547 3.453 5 O -0.531 6.531 6 O -0.346 6.346 7 C 0.064 3.936 8 C 0.499 3.501 9 O -0.584 6.584 10 N -0.698 5.698 11 C 0.266 3.734 12 C -0.558 4.558 13 H 0.087 0.913 14 C 0.004 3.996 15 N -0.930 5.930 16 Si 0.986 3.014 17 H -0.262 1.262 18 H -0.286 1.286 19 H -0.262 1.262 20 C 0.099 3.901 21 N -0.319 5.319 22 N -0.347 5.347 23 C 0.120 3.880 24 C -0.109 4.109 25 C -0.160 4.160 26 C -0.140 4.140 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.413 0.587 33 H -0.008 1.008 34 H -0.008 1.008 35 H 0.269 0.731 36 H 0.198 0.802 37 H 0.129 0.871 38 H 0.108 0.892 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.039 0.961 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.574 -29.541 -1.069 34.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.049 3.951 3 C -0.330 4.330 4 C 0.394 3.606 5 O -0.422 6.422 6 O -0.261 6.261 7 C -0.013 4.013 8 C 0.285 3.715 9 O -0.464 6.464 10 N -0.350 5.350 11 C 0.144 3.856 12 C -0.596 4.596 13 H 0.105 0.895 14 C -0.196 4.196 15 N -0.569 5.569 16 Si 0.809 3.191 17 H -0.187 1.187 18 H -0.212 1.212 19 H -0.187 1.187 20 C -0.088 4.088 21 N -0.137 5.137 22 N -0.125 5.125 23 C 0.001 3.999 24 C -0.128 4.128 25 C -0.217 4.217 26 C -0.198 4.198 27 H 0.122 0.878 28 H 0.112 0.888 29 H 0.129 0.871 30 H 0.142 0.858 31 H 0.143 0.857 32 H 0.249 0.751 33 H 0.010 0.990 34 H 0.010 0.990 35 H 0.078 0.922 36 H 0.215 0.785 37 H 0.146 0.854 38 H 0.126 0.874 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.103 0.897 42 H 0.058 0.942 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.236 -30.881 -1.058 34.905 hybrid contribution -0.082 2.169 -0.080 2.172 sum -16.318 -28.712 -1.138 33.045 Atomic orbital electron populations 1.21134 0.83682 1.06375 1.05708 1.21820 0.96013 0.85493 0.91821 1.19113 0.94323 0.89937 1.29587 1.20145 0.83294 0.85301 0.71833 1.90762 1.17812 1.84743 1.48904 1.86588 1.39686 1.15477 1.84393 1.22713 0.93828 0.77602 1.07159 1.20717 0.90295 0.83751 0.76716 1.90683 1.25601 1.78697 1.51440 1.46023 1.11774 1.04602 1.72610 1.18620 0.84904 0.87531 0.94556 1.21594 0.94650 0.90210 1.53137 0.89529 1.26062 0.94778 1.04888 0.93824 1.70134 1.03103 1.33817 1.49802 0.85189 0.77717 0.76706 0.79490 1.18661 1.21197 1.18661 1.24351 0.97883 0.91818 0.94777 1.77218 0.97446 1.12989 1.26066 1.48850 1.03154 1.07216 1.53311 1.22443 1.03009 0.75112 0.99360 1.21491 0.99665 0.97661 0.94022 1.22144 0.98658 0.99140 1.01710 1.21746 1.02764 0.92093 1.03157 0.87757 0.88817 0.87117 0.85764 0.85742 0.75097 0.99012 0.99018 0.92235 0.78522 0.85356 0.87382 0.92387 0.91689 0.89674 0.94236 0.91712 0.91857 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 8.73 71.24 0.62 -0.74 16 2 C 0.18 3.54 5.76 42.17 0.24 3.78 16 3 C -0.32 -8.21 6.13 -20.16 -0.12 -8.33 16 4 C 0.55 15.99 7.95 70.20 0.56 16.55 16 5 O -0.53 -15.46 14.63 19.76 0.29 -15.17 16 6 O -0.35 -11.47 9.60 -50.30 -0.48 -11.96 16 7 C 0.06 1.92 5.95 71.24 0.42 2.34 16 8 C 0.50 20.55 7.91 87.66 0.69 21.24 16 9 O -0.58 -30.07 16.50 15.76 0.26 -29.81 16 10 N -0.70 -29.33 5.55 -466.81 -2.59 -31.92 16 11 C 0.27 14.57 5.43 85.64 0.46 15.04 16 12 C -0.56 -30.12 9.28 25.60 0.24 -29.88 16 13 H 0.09 4.17 7.60 -2.91 -0.02 4.15 16 14 C 0.00 0.24 5.46 84.65 0.46 0.70 16 15 N -0.93 -56.03 13.29 21.45 0.28 -55.74 16 16 Si 0.99 42.12 29.54 68.60 2.03 44.14 16 17 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 18 H -0.29 -12.19 7.11 99.48 0.71 -11.49 16 19 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 20 C 0.10 2.60 11.87 85.66 1.02 3.62 16 21 N -0.32 -7.78 12.50 -56.25 -0.70 -8.48 16 22 N -0.35 -6.23 3.41 -332.96 -1.14 -7.36 16 23 C 0.12 1.08 5.55 86.38 0.48 1.56 16 24 C -0.11 -0.91 3.13 -10.79 -0.03 -0.95 16 25 C -0.16 -1.30 7.58 71.98 0.55 -0.75 16 26 C -0.14 -0.55 9.19 71.98 0.66 0.11 16 27 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.09 1.50 6.51 -2.39 -0.02 1.49 16 29 H 0.11 0.68 4.38 -2.39 -0.01 0.67 16 30 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 31 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 32 H 0.41 13.89 8.32 -92.71 -0.77 13.12 16 33 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 34 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 35 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 36 H 0.20 5.00 8.06 -2.91 -0.02 4.98 16 37 H 0.13 0.38 7.62 -2.39 -0.02 0.37 16 38 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.08 0.30 6.85 -2.39 -0.02 0.28 16 42 H 0.04 0.50 5.89 -2.39 -0.01 0.49 16 43 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 44 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 45 H 0.08 0.07 8.14 -2.39 -0.02 0.05 16 Total: -1.00 -79.04 379.33 4.44 -74.60 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.24 Total: 17.42 kcal Atomic # 6 Polarization: 18.03 SS G_CDS: 6.25 Total: 24.28 kcal Atomic # 7 Polarization: -99.36 SS G_CDS: -4.14 Total: -103.50 kcal Atomic # 8 Polarization: -57.01 SS G_CDS: 0.07 Total: -56.94 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.14 kcal Total: -79.04 4.44 -74.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767022442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.743 kcal (2) G-P(sol) polarization free energy of solvation -79.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds