Wall clock time and date at job start Tue Mar 31 2020 14:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30842 * 125.90409 * 2 1 4 4 N 1.40088 * 108.20582 * 179.81747 * 3 2 1 5 5 H 0.96995 * 126.03011 * 180.23421 * 4 3 2 6 6 C 1.34951 * 107.92462 * 0.36252 * 4 3 2 7 7 C 1.50698 * 126.12310 * 179.90979 * 6 4 3 8 8 C 1.35316 * 107.74685 * 359.64029 * 6 4 3 9 9 C 1.50699 * 126.03749 * 180.20463 * 8 6 4 10 10 H 1.08999 * 109.47127 * 6.73871 * 9 8 6 11 11 C 1.53005 * 109.47185 * 246.73604 * 9 8 6 12 12 C 1.53003 * 109.46978 * 126.73817 * 9 8 6 13 13 C 1.50703 * 109.46991 * 184.99916 * 12 9 8 14 14 O 1.20818 * 119.99829 * 359.97438 * 13 12 9 15 15 O 1.34230 * 119.99682 * 179.97438 * 13 12 9 16 16 C 1.45199 * 116.99738 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.47020 * 180.02562 * 16 15 13 18 18 O 1.21280 * 120.00095 * 0.02562 * 17 16 15 19 19 N 1.34779 * 120.00186 * 180.02562 * 17 16 15 20 20 C 1.46498 * 120.00196 * 180.02562 * 19 17 16 21 21 C 1.50707 * 109.46942 * 180.02562 * 20 19 17 22 22 H 1.07997 * 120.00140 * 359.97438 * 21 20 19 23 23 C 1.37878 * 119.99858 * 179.97438 * 21 20 19 24 24 N 1.31519 * 119.99744 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 119.99916 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46953 * 90.00802 * 25 23 21 27 27 H 1.48508 * 109.46951 * 210.00272 * 25 23 21 28 28 H 1.48497 * 109.47376 * 330.00408 * 25 23 21 29 29 H 1.09000 * 109.47202 * 267.73403 * 1 2 3 30 30 H 1.09006 * 109.46579 * 27.73072 * 1 2 3 31 31 H 1.08999 * 109.47233 * 147.72602 * 1 2 3 32 32 H 1.08995 * 109.46726 * 269.68705 * 7 6 4 33 33 H 1.08997 * 109.47155 * 149.68544 * 7 6 4 34 34 H 1.08999 * 109.47156 * 29.68397 * 7 6 4 35 35 H 1.08995 * 109.47099 * 183.54417 * 11 9 8 36 36 H 1.09000 * 109.46672 * 303.54886 * 11 9 8 37 37 H 1.08999 * 109.46573 * 63.54544 * 11 9 8 38 38 H 1.08996 * 109.46998 * 305.00151 * 12 9 8 39 39 H 1.09002 * 109.46846 * 65.00180 * 12 9 8 40 40 H 1.09002 * 109.47236 * 300.00660 * 16 15 13 41 41 H 1.09001 * 109.46998 * 60.00563 * 16 15 13 42 42 H 0.97005 * 119.99634 * 0.02562 * 19 17 16 43 43 H 1.09002 * 109.47228 * 299.99959 * 20 19 17 44 44 H 1.08997 * 109.47447 * 60.00408 * 20 19 17 45 45 H 0.97003 * 119.99393 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 0.0042 5 1 4.3908 1.2078 0.0084 6 6 3.6142 -0.7155 -0.0013 7 6 4.8350 -1.5991 -0.0014 8 6 2.3271 -1.1331 -0.0008 9 6 1.8598 -2.5658 -0.0015 10 1 2.7175 -3.2278 0.1180 11 6 1.1591 -2.8731 -1.3265 12 6 0.8821 -2.7840 1.1550 13 6 0.5098 -4.2424 1.2297 14 8 0.9779 -5.0266 0.4388 15 8 -0.3420 -4.6700 2.1749 16 6 -0.6558 -6.0876 2.1868 17 6 -1.6203 -6.3791 3.3074 18 8 -2.0055 -5.4806 4.0251 19 7 -2.0547 -7.6385 3.5122 20 6 -2.9927 -7.9218 4.6012 21 6 -3.3173 -9.3934 4.6144 22 1 -2.8701 -10.0517 3.8843 23 6 -4.1854 -9.8994 5.5586 24 7 -4.7304 -9.0977 6.4474 25 14 -4.5884 -11.7233 5.5745 26 1 -3.6194 -12.4367 6.4447 27 1 -5.9637 -11.9218 6.0986 28 1 -4.5026 -12.2613 4.1931 29 1 -0.3633 -0.0406 1.0269 30 1 -0.3633 0.9097 -0.4782 31 1 -0.3634 -0.8689 -0.5487 32 1 5.1289 -1.8124 -1.0291 33 1 4.6076 -2.5329 0.5127 34 1 5.6513 -1.0910 0.5120 35 1 0.7660 -3.8894 -1.3025 36 1 0.3397 -2.1699 -1.4757 37 1 1.8726 -2.7787 -2.1452 38 1 1.3523 -2.4806 2.0903 39 1 -0.0153 -2.1879 0.9894 40 1 -1.1090 -6.3674 1.2357 41 1 0.2591 -6.6610 2.3359 42 1 -1.7462 -8.3572 2.9384 43 1 -2.5404 -7.6414 5.5525 44 1 -3.9077 -7.3489 4.4510 45 1 -5.3414 -9.4536 7.1114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772028612.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:50 Heat of formation + Delta-G solvation = -69.675256 kcal Electronic energy + Delta-G solvation = -26465.381680 eV Core-core repulsion = 22484.132740 eV Total energy + Delta-G solvation = -3981.248939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.82295 -40.58358 -38.75570 -36.77082 -35.45432 -34.24245 -33.68444 -32.41024 -31.05581 -29.60898 -28.49318 -28.03537 -27.15516 -26.49459 -23.25709 -22.47530 -20.77898 -20.51777 -19.92720 -19.43114 -17.75688 -17.56476 -17.16322 -16.75986 -16.25067 -15.61195 -15.48814 -15.17440 -14.95180 -14.55126 -14.15263 -13.99320 -13.83787 -13.76862 -13.38011 -13.17604 -13.03144 -12.90689 -12.73476 -12.61420 -12.39556 -12.22867 -11.99151 -11.84005 -11.62275 -11.48826 -11.23438 -11.01734 -10.92109 -10.66942 -10.58154 -10.35025 -10.32831 -9.55561 -9.44250 -9.16807 -8.78346 -8.70074 -7.98561 -6.19822 -4.27213 1.51117 2.15732 2.30376 2.48900 2.58332 3.18921 3.22993 3.29259 3.31630 3.98374 4.25506 4.30809 4.34661 4.47951 4.64209 4.76091 4.85725 4.97925 5.01638 5.05503 5.16293 5.19109 5.24127 5.25575 5.30979 5.34647 5.35708 5.39439 5.44922 5.61741 5.69027 5.72411 5.89933 6.04986 6.11557 6.34908 6.48650 6.94713 7.22820 7.31343 7.37977 7.45842 7.59560 7.72906 7.91907 8.50370 8.71301 8.96967 9.39173 10.90276 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.031416 B = 0.001876 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.054346 B =14919.805397 C =15249.721119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.090 3.910 3 N -0.296 5.296 4 N -0.478 5.478 5 H 0.437 0.563 6 C 0.094 3.906 7 C -0.096 4.096 8 C -0.229 4.229 9 C 0.003 3.997 10 H 0.085 0.915 11 C -0.153 4.153 12 C -0.111 4.111 13 C 0.461 3.539 14 O -0.510 6.510 15 O -0.330 6.330 16 C 0.049 3.951 17 C 0.499 3.501 18 O -0.534 6.534 19 N -0.707 5.707 20 C 0.251 3.749 21 C -0.545 4.545 22 H 0.064 0.936 23 C 0.064 3.936 24 N -0.884 5.884 25 Si 0.906 3.094 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.272 1.272 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.393 0.607 43 H 0.029 0.971 44 H 0.030 0.970 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.087 16.055 -16.112 29.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.077 4.077 3 N -0.119 5.119 4 N -0.186 5.186 5 H 0.281 0.719 6 C -0.035 4.035 7 C -0.155 4.155 8 C -0.240 4.240 9 C -0.016 4.016 10 H 0.104 0.896 11 C -0.210 4.210 12 C -0.149 4.149 13 C 0.305 3.695 14 O -0.398 6.398 15 O -0.245 6.245 16 C -0.029 4.029 17 C 0.282 3.718 18 O -0.412 6.412 19 N -0.357 5.357 20 C 0.131 3.869 21 C -0.584 4.584 22 H 0.082 0.918 23 C -0.140 4.140 24 N -0.522 5.522 25 Si 0.733 3.267 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.197 1.197 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.226 0.774 43 H 0.047 0.953 44 H 0.048 0.952 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 17.791 17.713 -15.623 29.569 hybrid contribution 0.407 -1.946 -0.201 1.998 sum 18.198 15.767 -15.823 28.812 Atomic orbital electron populations 1.20456 0.86763 1.03716 1.03575 1.22202 0.96934 0.90056 0.98498 1.77312 0.86437 1.22308 1.25861 1.46145 1.07350 1.04773 1.60333 0.71915 1.20880 0.96901 0.84953 1.00744 1.20516 0.92764 0.98582 1.03619 1.19554 0.91169 0.95626 1.17629 1.19196 0.97574 0.90859 0.94003 0.89635 1.22028 1.00418 1.02734 0.95855 1.21591 1.02310 0.89065 1.01923 1.23828 0.75677 0.92287 0.77736 1.90627 1.51995 1.57076 1.40145 1.86581 1.58996 1.26958 1.51929 1.22844 1.00220 0.79644 1.00192 1.19920 0.82447 0.84223 0.85238 1.90709 1.57907 1.44936 1.47605 1.46369 1.47054 1.07070 1.35245 1.19172 0.87388 0.96191 0.84163 1.21211 1.28413 0.92506 1.16224 0.91763 1.24959 0.95417 0.98651 0.95011 1.69977 1.29835 1.35212 1.17136 0.86386 0.77781 0.84167 0.78400 1.20445 1.20981 1.19721 0.89858 0.90704 0.89793 0.89965 0.89220 0.91004 0.90668 0.92627 0.92649 0.87504 0.87186 0.88551 0.88591 0.77445 0.95279 0.95249 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.65 8.67 36.00 0.31 -0.34 16 2 C 0.09 0.86 7.04 -82.40 -0.58 0.28 16 3 N -0.30 -3.12 12.70 33.67 0.43 -2.69 16 4 N -0.48 -3.74 7.36 33.48 0.25 -3.49 16 5 H 0.44 2.07 8.96 -182.61 -1.64 0.43 16 6 C 0.09 0.71 7.21 -82.26 -0.59 0.12 16 7 C -0.10 -0.43 10.11 36.00 0.36 -0.07 16 8 C -0.23 -2.00 4.81 -105.05 -0.51 -2.51 16 9 C 0.00 0.03 2.17 -91.77 -0.20 -0.17 16 10 H 0.09 0.73 6.57 -51.93 -0.34 0.39 16 11 C -0.15 -1.33 8.88 37.16 0.33 -1.00 16 12 C -0.11 -1.03 4.98 -27.88 -0.14 -1.17 16 13 C 0.46 5.73 7.65 36.01 0.28 6.01 16 14 O -0.51 -6.91 13.73 -18.74 -0.26 -7.17 16 15 O -0.33 -5.01 9.75 -45.90 -0.45 -5.46 16 16 C 0.05 0.72 5.94 36.00 0.21 0.93 16 17 C 0.50 9.88 7.91 -10.99 -0.09 9.79 16 18 O -0.53 -12.96 16.50 -14.10 -0.23 -13.20 16 19 N -0.71 -14.47 5.55 -61.47 -0.34 -14.82 16 20 C 0.25 6.53 5.43 -5.19 -0.03 6.50 16 21 C -0.55 -14.52 9.28 -34.44 -0.32 -14.84 16 22 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 23 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 24 N -0.88 -25.73 13.29 55.43 0.74 -24.99 16 25 Si 0.91 20.58 29.54 -169.99 -5.02 15.56 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 29 H 0.08 0.57 7.88 -51.93 -0.41 0.16 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.55 5.01 -51.93 -0.26 0.29 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.41 7.06 -51.93 -0.37 0.04 16 34 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.07 0.77 5.90 -51.93 -0.31 0.46 16 36 H 0.05 0.44 5.67 -51.93 -0.29 0.14 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.11 0.91 5.61 -51.93 -0.29 0.61 16 40 H 0.10 1.23 8.13 -51.93 -0.42 0.81 16 41 H 0.10 1.23 8.13 -51.93 -0.42 0.81 16 42 H 0.39 6.73 8.32 -40.82 -0.34 6.39 16 43 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 375.43 15.07 5.66 5.66 Total: -1.00 -35.28 375.43 -7.87 -43.14 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -7.58 Total: 2.28 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -1.05 Total: 5.17 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 1.07 Total: -45.99 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.94 Total: -25.82 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.28 -7.87 -43.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772028612.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.532 kcal (2) G-P(sol) polarization free energy of solvation -35.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds