Wall clock time and date at job start Tue Mar 31 2020 14:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30842 * 125.90409 * 2 1 4 4 N 1.40088 * 108.20582 * 179.81747 * 3 2 1 5 5 H 0.96995 * 126.03011 * 180.23421 * 4 3 2 6 6 C 1.34951 * 107.92462 * 0.36252 * 4 3 2 7 7 C 1.50698 * 126.12310 * 179.90979 * 6 4 3 8 8 C 1.35316 * 107.74685 * 359.64029 * 6 4 3 9 9 C 1.50699 * 126.03749 * 180.20463 * 8 6 4 10 10 H 1.08999 * 109.47127 * 6.73871 * 9 8 6 11 11 C 1.53005 * 109.47185 * 246.73604 * 9 8 6 12 12 C 1.53003 * 109.46978 * 126.73817 * 9 8 6 13 13 C 1.50703 * 109.46991 * 184.99916 * 12 9 8 14 14 O 1.20818 * 119.99829 * 359.97438 * 13 12 9 15 15 O 1.34230 * 119.99682 * 179.97438 * 13 12 9 16 16 C 1.45199 * 116.99738 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.47020 * 180.02562 * 16 15 13 18 18 O 1.21280 * 120.00095 * 0.02562 * 17 16 15 19 19 N 1.34779 * 120.00186 * 180.02562 * 17 16 15 20 20 C 1.46498 * 120.00196 * 180.02562 * 19 17 16 21 21 C 1.50707 * 109.46942 * 180.02562 * 20 19 17 22 22 H 1.07997 * 120.00140 * 359.97438 * 21 20 19 23 23 C 1.37878 * 119.99858 * 179.97438 * 21 20 19 24 24 N 1.31519 * 119.99744 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 119.99916 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46953 * 90.00802 * 25 23 21 27 27 H 1.48508 * 109.46951 * 210.00272 * 25 23 21 28 28 H 1.48497 * 109.47376 * 330.00408 * 25 23 21 29 29 H 1.09000 * 109.47202 * 267.73403 * 1 2 3 30 30 H 1.09006 * 109.46579 * 27.73072 * 1 2 3 31 31 H 1.08999 * 109.47233 * 147.72602 * 1 2 3 32 32 H 1.08995 * 109.46726 * 269.68705 * 7 6 4 33 33 H 1.08997 * 109.47155 * 149.68544 * 7 6 4 34 34 H 1.08999 * 109.47156 * 29.68397 * 7 6 4 35 35 H 1.08995 * 109.47099 * 183.54417 * 11 9 8 36 36 H 1.09000 * 109.46672 * 303.54886 * 11 9 8 37 37 H 1.08999 * 109.46573 * 63.54544 * 11 9 8 38 38 H 1.08996 * 109.46998 * 305.00151 * 12 9 8 39 39 H 1.09002 * 109.46846 * 65.00180 * 12 9 8 40 40 H 1.09002 * 109.47236 * 300.00660 * 16 15 13 41 41 H 1.09001 * 109.46998 * 60.00563 * 16 15 13 42 42 H 0.97005 * 119.99634 * 0.02562 * 19 17 16 43 43 H 1.09002 * 109.47228 * 299.99959 * 20 19 17 44 44 H 1.08997 * 109.47447 * 60.00408 * 20 19 17 45 45 H 0.97003 * 119.99393 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 0.0042 5 1 4.3908 1.2078 0.0084 6 6 3.6142 -0.7155 -0.0013 7 6 4.8350 -1.5991 -0.0014 8 6 2.3271 -1.1331 -0.0008 9 6 1.8598 -2.5658 -0.0015 10 1 2.7175 -3.2278 0.1180 11 6 1.1591 -2.8731 -1.3265 12 6 0.8821 -2.7840 1.1550 13 6 0.5098 -4.2424 1.2297 14 8 0.9779 -5.0266 0.4388 15 8 -0.3420 -4.6700 2.1749 16 6 -0.6558 -6.0876 2.1868 17 6 -1.6203 -6.3791 3.3074 18 8 -2.0055 -5.4806 4.0251 19 7 -2.0547 -7.6385 3.5122 20 6 -2.9927 -7.9218 4.6012 21 6 -3.3173 -9.3934 4.6144 22 1 -2.8701 -10.0517 3.8843 23 6 -4.1854 -9.8994 5.5586 24 7 -4.7304 -9.0977 6.4474 25 14 -4.5884 -11.7233 5.5745 26 1 -3.6194 -12.4367 6.4447 27 1 -5.9637 -11.9218 6.0986 28 1 -4.5026 -12.2613 4.1931 29 1 -0.3633 -0.0406 1.0269 30 1 -0.3633 0.9097 -0.4782 31 1 -0.3634 -0.8689 -0.5487 32 1 5.1289 -1.8124 -1.0291 33 1 4.6076 -2.5329 0.5127 34 1 5.6513 -1.0910 0.5120 35 1 0.7660 -3.8894 -1.3025 36 1 0.3397 -2.1699 -1.4757 37 1 1.8726 -2.7787 -2.1452 38 1 1.3523 -2.4806 2.0903 39 1 -0.0153 -2.1879 0.9894 40 1 -1.1090 -6.3674 1.2357 41 1 0.2591 -6.6610 2.3359 42 1 -1.7462 -8.3572 2.9384 43 1 -2.5404 -7.6414 5.5525 44 1 -3.9077 -7.3489 4.4510 45 1 -5.3414 -9.4536 7.1114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772028612.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:49 Heat of formation + Delta-G solvation = -93.760676 kcal Electronic energy + Delta-G solvation = -26466.426102 eV Core-core repulsion = 22484.132740 eV Total energy + Delta-G solvation = -3982.293362 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.45998 -41.64807 -40.36124 -37.83240 -36.27948 -36.14127 -34.39802 -34.24895 -31.70936 -30.88464 -29.43921 -28.89602 -28.06932 -27.68854 -24.72326 -23.75481 -21.74264 -21.59622 -21.12295 -20.08369 -19.19563 -18.72362 -17.97096 -17.83835 -17.70206 -17.06018 -16.82486 -16.34229 -16.15463 -15.95996 -15.32871 -14.86326 -14.66655 -14.48996 -14.38387 -14.17426 -14.04467 -13.89749 -13.67022 -13.63256 -13.47476 -13.32695 -13.10153 -12.92637 -12.82838 -12.70782 -12.40012 -12.21969 -12.18962 -11.89096 -11.78487 -11.49151 -11.43462 -11.11721 -10.86543 -10.80493 -10.18458 -9.90680 -9.32472 -8.28440 -6.44934 0.90754 1.18686 1.33373 1.45938 1.47274 1.58756 1.59221 1.75126 1.99496 2.36136 2.63406 3.06776 3.61766 3.71774 3.75194 3.76511 3.98627 4.09310 4.12184 4.16161 4.25085 4.38501 4.50065 4.56661 4.63283 4.74404 4.78546 4.79023 4.97614 5.01261 5.07349 5.10310 5.17056 5.23538 5.27906 5.35829 5.39938 5.44064 5.51444 5.65253 5.79232 5.83574 6.45945 6.64074 6.68713 6.75905 6.82818 7.22293 7.38546 8.83597 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.031416 B = 0.001876 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.054346 B =14919.805397 C =15249.721119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.080 3.920 3 N -0.333 5.333 4 N -0.474 5.474 5 H 0.448 0.552 6 C 0.100 3.900 7 C -0.096 4.096 8 C -0.246 4.246 9 C 0.013 3.987 10 H 0.087 0.913 11 C -0.150 4.150 12 C -0.108 4.108 13 C 0.465 3.535 14 O -0.519 6.519 15 O -0.352 6.352 16 C 0.061 3.939 17 C 0.498 3.502 18 O -0.585 6.585 19 N -0.700 5.700 20 C 0.266 3.734 21 C -0.556 4.556 22 H 0.086 0.914 23 C 0.003 3.997 24 N -0.930 5.930 25 Si 0.985 3.015 26 H -0.271 1.271 27 H -0.285 1.285 28 H -0.255 1.255 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.412 0.588 43 H -0.008 1.008 44 H -0.008 1.008 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.712 14.757 -17.742 30.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 N -0.157 5.157 4 N -0.183 5.183 5 H 0.294 0.706 6 C -0.029 4.029 7 C -0.154 4.154 8 C -0.257 4.257 9 C -0.007 4.007 10 H 0.106 0.894 11 C -0.207 4.207 12 C -0.145 4.145 13 C 0.309 3.691 14 O -0.408 6.408 15 O -0.268 6.268 16 C -0.016 4.016 17 C 0.284 3.716 18 O -0.465 6.465 19 N -0.351 5.351 20 C 0.144 3.856 21 C -0.594 4.594 22 H 0.104 0.896 23 C -0.196 4.196 24 N -0.568 5.568 25 Si 0.809 3.191 26 H -0.197 1.197 27 H -0.211 1.211 28 H -0.179 1.179 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.133 0.867 39 H 0.138 0.862 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.249 0.751 43 H 0.010 0.990 44 H 0.010 0.990 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 19.464 16.414 -17.307 30.786 hybrid contribution -0.030 -1.443 0.284 1.472 sum 19.434 14.971 -17.023 29.859 Atomic orbital electron populations 1.20527 0.85928 1.04187 1.04023 1.22524 0.97741 0.90213 0.98145 1.77249 0.87682 1.23331 1.27459 1.46189 1.07094 1.05232 1.59803 0.70561 1.21361 0.97666 0.85044 0.98869 1.20637 0.91946 0.98130 1.04674 1.19610 0.91683 0.95362 1.19055 1.19099 0.97291 0.90884 0.93413 0.89434 1.21987 1.00711 1.01886 0.96159 1.21711 1.03055 0.86984 1.02746 1.24329 0.74745 0.93191 0.76787 1.90624 1.52260 1.57587 1.40338 1.86585 1.60037 1.26909 1.53239 1.22702 0.99905 0.80438 0.98574 1.20778 0.82181 0.82997 0.85647 1.90685 1.59751 1.46318 1.49763 1.46049 1.46296 1.08439 1.34328 1.18619 0.86675 0.95984 0.84341 1.21619 1.28396 0.92742 1.16669 0.89557 1.26063 0.95118 1.04055 0.94407 1.70138 1.30722 1.37834 1.18136 0.85146 0.77296 0.77484 0.79220 1.19665 1.21078 1.17890 0.89400 0.90562 0.88972 0.88763 0.89041 0.89178 0.92132 0.92071 0.92296 0.86702 0.86166 0.85834 0.85872 0.75126 0.99040 0.98987 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.26 8.67 71.23 0.62 -0.64 16 2 C 0.08 1.47 7.04 43.10 0.30 1.77 16 3 N -0.33 -6.84 12.70 -47.38 -0.60 -7.44 16 4 N -0.47 -6.84 7.36 -48.00 -0.35 -7.19 16 5 H 0.45 3.68 8.96 -213.33 -1.91 1.77 16 6 C 0.10 1.34 7.21 41.40 0.30 1.64 16 7 C -0.10 -0.62 10.11 71.24 0.72 0.10 16 8 C -0.25 -3.97 4.81 -20.14 -0.10 -4.07 16 9 C 0.01 0.20 2.17 -11.54 -0.03 0.17 16 10 H 0.09 1.32 6.57 -2.39 -0.02 1.31 16 11 C -0.15 -2.40 8.88 71.98 0.64 -1.76 16 12 C -0.11 -1.84 4.98 29.85 0.15 -1.69 16 13 C 0.46 10.78 7.65 71.24 0.54 11.33 16 14 O -0.52 -13.00 13.73 21.99 0.30 -12.69 16 15 O -0.35 -10.24 9.75 -45.06 -0.44 -10.68 16 16 C 0.06 1.68 5.94 71.23 0.42 2.10 16 17 C 0.50 19.69 7.91 87.66 0.69 20.39 16 18 O -0.58 -29.22 16.50 15.77 0.26 -28.96 16 19 N -0.70 -28.56 5.55 -466.78 -2.59 -31.15 16 20 C 0.27 14.31 5.43 85.64 0.46 14.77 16 21 C -0.56 -29.59 9.28 25.60 0.24 -29.36 16 22 H 0.09 4.11 7.60 -2.91 -0.02 4.08 16 23 C 0.00 0.18 5.46 84.65 0.46 0.64 16 24 N -0.93 -55.38 13.29 21.45 0.28 -55.09 16 25 Si 0.99 41.65 29.54 68.60 2.03 43.68 16 26 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 27 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 28 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 29 H 0.09 1.15 7.88 -2.39 -0.02 1.13 16 30 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.09 1.11 5.01 -2.39 -0.01 1.10 16 32 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.09 0.61 7.06 -2.39 -0.02 0.59 16 34 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.06 1.16 5.90 -2.39 -0.01 1.14 16 36 H 0.06 0.89 5.67 -2.39 -0.01 0.87 16 37 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.12 1.82 5.61 -2.39 -0.01 1.81 16 40 H 0.12 2.80 8.13 -2.39 -0.02 2.78 16 41 H 0.12 2.80 8.13 -2.39 -0.02 2.78 16 42 H 0.41 13.46 8.32 -92.70 -0.77 12.69 16 43 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 44 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 45 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -78.25 375.43 2.69 -75.57 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -1.63 Total: 18.57 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 5.43 Total: 15.40 kcal Atomic # 7 Polarization: -97.61 SS G_CDS: -3.26 Total: -100.87 kcal Atomic # 8 Polarization: -52.46 SS G_CDS: 0.12 Total: -52.34 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -78.25 2.69 -75.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772028612.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.194 kcal (2) G-P(sol) polarization free energy of solvation -78.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds