Wall clock time and date at job start Tue Mar 31 2020 14:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30843 * 125.89601 * 2 1 4 4 N 1.40088 * 108.20049 * 180.25754 * 3 2 1 5 5 H 0.97001 * 126.03752 * 179.73522 * 4 3 2 6 6 C 1.34947 * 107.92945 * 359.72120 * 4 3 2 7 7 C 1.50697 * 126.12759 * 179.97438 * 6 4 3 8 8 C 1.35322 * 107.74266 * 359.97438 * 6 4 3 9 9 C 1.50703 * 126.03929 * 180.02562 * 8 6 4 10 10 H 1.09000 * 109.46628 * 5.90848 * 9 8 6 11 11 C 1.52998 * 109.46860 * 125.90474 * 9 8 6 12 12 C 1.52997 * 109.47301 * 245.90695 * 9 8 6 13 13 C 1.50702 * 109.47227 * 173.34897 * 12 9 8 14 14 O 1.20826 * 119.99741 * 359.97438 * 13 12 9 15 15 O 1.34222 * 119.99853 * 180.02562 * 13 12 9 16 16 C 1.45199 * 116.99810 * 180.02562 * 15 13 12 17 17 C 1.50707 * 109.47171 * 179.97438 * 16 15 13 18 18 O 1.21277 * 119.99620 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99952 * 179.97438 * 17 16 15 20 20 C 1.46503 * 119.99848 * 179.97438 * 19 17 16 21 21 C 1.50700 * 109.46959 * 180.02562 * 20 19 17 22 22 H 1.07997 * 120.00442 * 359.97438 * 21 20 19 23 23 C 1.37873 * 119.99915 * 180.02562 * 21 20 19 24 24 N 1.31520 * 120.00308 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00142 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47203 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47438 * 119.99774 * 25 23 21 28 28 H 1.48501 * 109.46937 * 239.99793 * 25 23 21 29 29 H 1.08999 * 109.47007 * 275.14414 * 1 2 3 30 30 H 1.08997 * 109.47110 * 35.14481 * 1 2 3 31 31 H 1.09000 * 109.47371 * 155.14723 * 1 2 3 32 32 H 1.08997 * 109.47178 * 270.02013 * 7 6 4 33 33 H 1.08995 * 109.47186 * 30.02653 * 7 6 4 34 34 H 1.09005 * 109.46628 * 150.02707 * 7 6 4 35 35 H 1.09000 * 109.47418 * 299.99556 * 11 9 8 36 36 H 1.09001 * 109.47222 * 60.00166 * 11 9 8 37 37 H 1.09005 * 109.46745 * 180.02562 * 11 9 8 38 38 H 1.09005 * 109.46764 * 293.35162 * 12 9 8 39 39 H 1.08995 * 109.46960 * 53.34412 * 12 9 8 40 40 H 1.09007 * 109.46903 * 299.99492 * 16 15 13 41 41 H 1.08990 * 109.47874 * 59.99623 * 16 15 13 42 42 H 0.97003 * 119.99878 * 359.97438 * 19 17 16 43 43 H 1.08997 * 109.46979 * 299.99814 * 20 19 17 44 44 H 1.08994 * 109.47188 * 60.00098 * 20 19 17 45 45 H 0.96997 * 120.00069 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 -0.0060 5 1 4.3908 1.2079 -0.0109 6 6 3.6143 -0.7153 -0.0033 7 6 4.8351 -1.5988 -0.0083 8 6 2.3271 -1.1330 0.0047 9 6 1.8599 -2.5657 0.0107 10 1 2.7197 -3.2278 0.1134 11 6 0.9039 -2.7854 1.1849 12 6 1.1348 -2.8713 -1.3014 13 6 0.8116 -4.3418 -1.3662 14 8 1.1291 -5.0707 -0.4564 15 8 0.1719 -4.8419 -2.4350 16 6 -0.1072 -6.2668 -2.4290 17 6 -0.8251 -6.6434 -3.6995 18 8 -1.0771 -5.7943 -4.5280 19 7 -1.1870 -7.9236 -3.9148 20 6 -1.8854 -8.2896 -5.1495 21 6 -2.1749 -9.7685 -5.1434 22 1 -1.8690 -10.3752 -4.3040 23 6 -2.8295 -10.3472 -6.2099 24 7 -3.2017 -9.6086 -7.2325 25 14 -3.1878 -12.1806 -6.2027 26 1 -2.6697 -12.7813 -4.9473 27 1 -4.6542 -12.3988 -6.2879 28 1 -2.5239 -12.8193 -7.3673 29 1 -0.3633 0.0921 1.0235 30 1 -0.3633 0.8403 -0.5916 31 1 -0.3634 -0.9325 -0.4319 32 1 5.1239 -1.8136 -1.0372 33 1 5.6538 -1.0901 0.5003 34 1 4.6102 -2.5320 0.5082 35 1 1.4205 -2.5679 2.1197 36 1 0.0441 -2.1233 1.0822 37 1 0.5663 -3.8219 1.1895 38 1 0.2115 -2.2938 -1.3493 39 1 1.7752 -2.6026 -2.1415 40 1 0.8296 -6.8202 -2.3629 41 1 -0.7344 -6.5107 -1.5717 42 1 -0.9851 -8.6027 -3.2522 43 1 -2.8224 -7.7366 -5.2145 44 1 -1.2590 -8.0452 -6.0074 45 1 -3.6626 -10.0157 -7.9826 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772028624.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:53 Heat of formation + Delta-G solvation = -69.889847 kcal Electronic energy + Delta-G solvation = -26454.314295 eV Core-core repulsion = 22473.056050 eV Total energy + Delta-G solvation = -3981.258245 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.82474 -40.58118 -38.75660 -36.76849 -35.46929 -34.24594 -33.68797 -32.41352 -31.07339 -29.58162 -28.46292 -28.12478 -27.11436 -26.49897 -23.23608 -22.47654 -20.80107 -20.51227 -19.92982 -19.43857 -17.78415 -17.55939 -17.16814 -16.76611 -16.28516 -15.53116 -15.51467 -15.18855 -14.96269 -14.56043 -14.15618 -13.96528 -13.86962 -13.76306 -13.38173 -13.14894 -13.02965 -12.86202 -12.78356 -12.61930 -12.40979 -12.24120 -12.00202 -11.82471 -11.61874 -11.47477 -11.23835 -10.99361 -10.94609 -10.67359 -10.58885 -10.35777 -10.34314 -9.55870 -9.42756 -9.17165 -8.79154 -8.70889 -7.98884 -6.20245 -4.27589 1.50739 2.15462 2.28304 2.48467 2.59944 3.18682 3.22003 3.29248 3.32239 3.98120 4.25569 4.30463 4.34889 4.47633 4.64989 4.74859 4.84880 4.92848 5.02802 5.04368 5.15962 5.20420 5.24207 5.25556 5.31624 5.35413 5.38372 5.39033 5.44535 5.59673 5.69401 5.73655 5.89676 6.04588 6.11401 6.34331 6.47598 6.94507 7.22620 7.31122 7.37673 7.45533 7.59529 7.72633 7.91512 8.50151 8.71177 8.96777 9.38916 10.89907 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.030670 B = 0.001869 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.717079 B =14974.692121 C =15170.252977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.090 3.910 3 N -0.296 5.296 4 N -0.478 5.478 5 H 0.437 0.563 6 C 0.094 3.906 7 C -0.097 4.097 8 C -0.229 4.229 9 C 0.003 3.997 10 H 0.086 0.914 11 C -0.155 4.155 12 C -0.109 4.109 13 C 0.461 3.539 14 O -0.510 6.510 15 O -0.330 6.330 16 C 0.049 3.951 17 C 0.499 3.501 18 O -0.534 6.534 19 N -0.707 5.707 20 C 0.251 3.749 21 C -0.545 4.545 22 H 0.065 0.935 23 C 0.063 3.937 24 N -0.884 5.884 25 Si 0.905 3.095 26 H -0.272 1.272 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.393 0.607 43 H 0.030 0.970 44 H 0.029 0.971 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.329 17.348 18.003 28.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.076 4.076 3 N -0.120 5.120 4 N -0.186 5.186 5 H 0.281 0.719 6 C -0.034 4.034 7 C -0.156 4.156 8 C -0.240 4.240 9 C -0.017 4.017 10 H 0.104 0.896 11 C -0.212 4.212 12 C -0.147 4.147 13 C 0.305 3.695 14 O -0.398 6.398 15 O -0.245 6.245 16 C -0.029 4.029 17 C 0.282 3.718 18 O -0.412 6.412 19 N -0.357 5.357 20 C 0.131 3.869 21 C -0.583 4.583 22 H 0.083 0.917 23 C -0.140 4.140 24 N -0.522 5.522 25 Si 0.732 3.268 26 H -0.196 1.196 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.226 0.774 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.136 18.969 17.445 29.393 hybrid contribution 0.382 -1.937 0.255 1.990 sum 14.517 17.032 17.699 28.532 Atomic orbital electron populations 1.20415 0.86772 1.03661 1.03246 1.22196 0.96926 0.90063 0.98451 1.77307 0.86440 1.22306 1.25911 1.46150 1.07354 1.04781 1.60276 0.71903 1.20903 0.96936 0.84963 1.00636 1.20529 0.92728 0.98552 1.03767 1.19565 0.91128 0.95631 1.17704 1.19200 0.98665 0.90769 0.93042 0.89582 1.22044 0.99014 1.02997 0.97162 1.21571 1.03830 0.88493 1.00777 1.23824 0.74223 0.92019 0.79477 1.90634 1.50319 1.61076 1.37802 1.86580 1.69379 1.25651 1.42870 1.22846 1.01855 0.79245 0.98953 1.19921 0.80714 0.83979 0.87214 1.90709 1.55148 1.49157 1.46150 1.46369 1.58199 1.07026 1.24143 1.19176 0.92087 0.95440 0.80244 1.21249 1.39357 0.92574 1.05112 0.91702 1.24961 0.95161 0.98860 0.95067 1.69983 1.38675 1.35837 1.07676 0.86336 0.78106 0.84168 0.78146 1.19603 1.20766 1.20784 0.90258 0.90629 0.89914 0.89830 0.91028 0.89208 0.92623 0.92348 0.90874 0.87340 0.87529 0.88586 0.88549 0.77438 0.95252 0.95268 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 8.80 36.00 0.32 -0.29 16 2 C 0.09 0.86 7.05 -82.41 -0.58 0.28 16 3 N -0.30 -3.11 12.70 33.67 0.43 -2.68 16 4 N -0.48 -3.73 7.36 33.48 0.25 -3.49 16 5 H 0.44 2.07 8.96 -182.61 -1.64 0.44 16 6 C 0.09 0.71 7.21 -82.26 -0.59 0.12 16 7 C -0.10 -0.45 10.11 36.00 0.36 -0.08 16 8 C -0.23 -2.01 4.80 -105.05 -0.50 -2.51 16 9 C 0.00 0.02 2.14 -91.77 -0.20 -0.17 16 10 H 0.09 0.74 6.51 -51.93 -0.34 0.40 16 11 C -0.16 -1.34 8.73 37.16 0.32 -1.01 16 12 C -0.11 -1.01 5.12 -27.88 -0.14 -1.16 16 13 C 0.46 5.74 7.68 36.01 0.28 6.01 16 14 O -0.51 -6.92 13.82 -18.75 -0.26 -7.18 16 15 O -0.33 -5.02 9.75 -45.88 -0.45 -5.47 16 16 C 0.05 0.72 5.94 36.01 0.21 0.93 16 17 C 0.50 9.88 7.91 -10.98 -0.09 9.80 16 18 O -0.53 -12.98 16.50 -14.10 -0.23 -13.21 16 19 N -0.71 -14.48 5.55 -61.47 -0.34 -14.82 16 20 C 0.25 6.52 5.43 -5.19 -0.03 6.49 16 21 C -0.54 -14.51 9.28 -34.44 -0.32 -14.83 16 22 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 23 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 24 N -0.88 -25.73 13.29 55.43 0.74 -24.99 16 25 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 26 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 H 0.08 0.50 8.07 -51.93 -0.42 0.08 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.54 4.58 -51.93 -0.24 0.30 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.09 0.41 7.06 -51.93 -0.37 0.04 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.45 5.48 -51.93 -0.28 0.16 16 37 H 0.07 0.74 6.11 -51.93 -0.32 0.43 16 38 H 0.11 0.90 5.76 -51.93 -0.30 0.60 16 39 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.10 1.23 8.13 -51.92 -0.42 0.81 16 41 H 0.10 1.23 8.13 -51.93 -0.42 0.81 16 42 H 0.39 6.73 8.32 -40.82 -0.34 6.39 16 43 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 375.49 15.07 5.66 5.66 Total: -1.00 -35.32 375.49 -7.86 -43.18 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -7.58 Total: 2.22 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -1.05 Total: 5.22 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 1.07 Total: -45.98 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.94 Total: -25.86 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.32 -7.86 -43.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772028624.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.707 kcal (2) G-P(sol) polarization free energy of solvation -35.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds