Wall clock time and date at job start Tue Mar 31 2020 14:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30843 * 125.89601 * 2 1 4 4 N 1.40088 * 108.20049 * 180.25754 * 3 2 1 5 5 H 0.97001 * 126.03752 * 179.73522 * 4 3 2 6 6 C 1.34947 * 107.92945 * 359.72120 * 4 3 2 7 7 C 1.50697 * 126.12759 * 179.97438 * 6 4 3 8 8 C 1.35322 * 107.74266 * 359.97438 * 6 4 3 9 9 C 1.50703 * 126.03929 * 180.02562 * 8 6 4 10 10 H 1.09000 * 109.46628 * 5.90848 * 9 8 6 11 11 C 1.52998 * 109.46860 * 125.90474 * 9 8 6 12 12 C 1.52997 * 109.47301 * 245.90695 * 9 8 6 13 13 C 1.50702 * 109.47227 * 173.34897 * 12 9 8 14 14 O 1.20826 * 119.99741 * 359.97438 * 13 12 9 15 15 O 1.34222 * 119.99853 * 180.02562 * 13 12 9 16 16 C 1.45199 * 116.99810 * 180.02562 * 15 13 12 17 17 C 1.50707 * 109.47171 * 179.97438 * 16 15 13 18 18 O 1.21277 * 119.99620 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99952 * 179.97438 * 17 16 15 20 20 C 1.46503 * 119.99848 * 179.97438 * 19 17 16 21 21 C 1.50700 * 109.46959 * 180.02562 * 20 19 17 22 22 H 1.07997 * 120.00442 * 359.97438 * 21 20 19 23 23 C 1.37873 * 119.99915 * 180.02562 * 21 20 19 24 24 N 1.31520 * 120.00308 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00142 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47203 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47438 * 119.99774 * 25 23 21 28 28 H 1.48501 * 109.46937 * 239.99793 * 25 23 21 29 29 H 1.08999 * 109.47007 * 275.14414 * 1 2 3 30 30 H 1.08997 * 109.47110 * 35.14481 * 1 2 3 31 31 H 1.09000 * 109.47371 * 155.14723 * 1 2 3 32 32 H 1.08997 * 109.47178 * 270.02013 * 7 6 4 33 33 H 1.08995 * 109.47186 * 30.02653 * 7 6 4 34 34 H 1.09005 * 109.46628 * 150.02707 * 7 6 4 35 35 H 1.09000 * 109.47418 * 299.99556 * 11 9 8 36 36 H 1.09001 * 109.47222 * 60.00166 * 11 9 8 37 37 H 1.09005 * 109.46745 * 180.02562 * 11 9 8 38 38 H 1.09005 * 109.46764 * 293.35162 * 12 9 8 39 39 H 1.08995 * 109.46960 * 53.34412 * 12 9 8 40 40 H 1.09007 * 109.46903 * 299.99492 * 16 15 13 41 41 H 1.08990 * 109.47874 * 59.99623 * 16 15 13 42 42 H 0.97003 * 119.99878 * 359.97438 * 19 17 16 43 43 H 1.08997 * 109.46979 * 299.99814 * 20 19 17 44 44 H 1.08994 * 109.47188 * 60.00098 * 20 19 17 45 45 H 0.96997 * 120.00069 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 -0.0060 5 1 4.3908 1.2079 -0.0109 6 6 3.6143 -0.7153 -0.0033 7 6 4.8351 -1.5988 -0.0083 8 6 2.3271 -1.1330 0.0047 9 6 1.8599 -2.5657 0.0107 10 1 2.7197 -3.2278 0.1134 11 6 0.9039 -2.7854 1.1849 12 6 1.1348 -2.8713 -1.3014 13 6 0.8116 -4.3418 -1.3662 14 8 1.1291 -5.0707 -0.4564 15 8 0.1719 -4.8419 -2.4350 16 6 -0.1072 -6.2668 -2.4290 17 6 -0.8251 -6.6434 -3.6995 18 8 -1.0771 -5.7943 -4.5280 19 7 -1.1870 -7.9236 -3.9148 20 6 -1.8854 -8.2896 -5.1495 21 6 -2.1749 -9.7685 -5.1434 22 1 -1.8690 -10.3752 -4.3040 23 6 -2.8295 -10.3472 -6.2099 24 7 -3.2017 -9.6086 -7.2325 25 14 -3.1878 -12.1806 -6.2027 26 1 -2.6697 -12.7813 -4.9473 27 1 -4.6542 -12.3988 -6.2879 28 1 -2.5239 -12.8193 -7.3673 29 1 -0.3633 0.0921 1.0235 30 1 -0.3633 0.8403 -0.5916 31 1 -0.3634 -0.9325 -0.4319 32 1 5.1239 -1.8136 -1.0372 33 1 5.6538 -1.0901 0.5003 34 1 4.6102 -2.5320 0.5082 35 1 1.4205 -2.5679 2.1197 36 1 0.0441 -2.1233 1.0822 37 1 0.5663 -3.8219 1.1895 38 1 0.2115 -2.2938 -1.3493 39 1 1.7752 -2.6026 -2.1415 40 1 0.8296 -6.8202 -2.3629 41 1 -0.7344 -6.5107 -1.5717 42 1 -0.9851 -8.6027 -3.2522 43 1 -2.8224 -7.7366 -5.2145 44 1 -1.2590 -8.0452 -6.0074 45 1 -3.6626 -10.0157 -7.9826 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772028624.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:52 Heat of formation + Delta-G solvation = -94.009652 kcal Electronic energy + Delta-G solvation = -26455.360208 eV Core-core repulsion = 22473.056050 eV Total energy + Delta-G solvation = -3982.304158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.46006 -41.64809 -40.36272 -37.82864 -36.29261 -36.14651 -34.40135 -34.25202 -31.72929 -30.87345 -29.36091 -28.99722 -28.07667 -27.65595 -24.72319 -23.73404 -21.75872 -21.59999 -21.11892 -20.08883 -19.20493 -18.73846 -17.96932 -17.83602 -17.72771 -17.07093 -16.84607 -16.32884 -16.11725 -15.95565 -15.35758 -14.87786 -14.66693 -14.45847 -14.38418 -14.19554 -14.05333 -13.87641 -13.67273 -13.63203 -13.42754 -13.35365 -13.11992 -12.90263 -12.84963 -12.74895 -12.37013 -12.21535 -12.17736 -11.89122 -11.79219 -11.47357 -11.44417 -11.11921 -10.86968 -10.82158 -10.18474 -9.91017 -9.33421 -8.28859 -6.45297 0.90277 1.18357 1.32403 1.45809 1.45844 1.58928 1.59635 1.75576 1.99377 2.35876 2.63261 3.06460 3.60669 3.73612 3.75927 3.75994 3.96720 4.08616 4.11934 4.15407 4.25007 4.35331 4.45742 4.56607 4.71235 4.75542 4.77318 4.82190 4.95069 5.02012 5.08281 5.10500 5.17732 5.23264 5.28366 5.35511 5.39273 5.43935 5.50713 5.65013 5.78649 5.83352 6.45637 6.64022 6.68447 6.75775 6.82560 7.22056 7.38277 8.83426 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.030670 B = 0.001869 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.717079 B =14974.692121 C =15170.252977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.081 3.919 3 N -0.333 5.333 4 N -0.474 5.474 5 H 0.448 0.552 6 C 0.100 3.900 7 C -0.097 4.097 8 C -0.246 4.246 9 C 0.012 3.988 10 H 0.087 0.913 11 C -0.152 4.152 12 C -0.105 4.105 13 C 0.465 3.535 14 O -0.519 6.519 15 O -0.352 6.352 16 C 0.061 3.939 17 C 0.498 3.502 18 O -0.585 6.585 19 N -0.699 5.699 20 C 0.266 3.734 21 C -0.556 4.556 22 H 0.087 0.913 23 C 0.003 3.997 24 N -0.930 5.930 25 Si 0.985 3.015 26 H -0.252 1.252 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.412 0.588 43 H -0.008 1.008 44 H -0.008 1.008 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.586 16.195 19.879 30.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 N -0.157 5.157 4 N -0.183 5.183 5 H 0.294 0.706 6 C -0.029 4.029 7 C -0.155 4.155 8 C -0.257 4.257 9 C -0.007 4.007 10 H 0.105 0.895 11 C -0.209 4.209 12 C -0.143 4.143 13 C 0.310 3.690 14 O -0.408 6.408 15 O -0.268 6.268 16 C -0.016 4.016 17 C 0.284 3.716 18 O -0.465 6.465 19 N -0.351 5.351 20 C 0.144 3.856 21 C -0.593 4.593 22 H 0.105 0.895 23 C -0.197 4.197 24 N -0.569 5.569 25 Si 0.809 3.191 26 H -0.176 1.176 27 H -0.205 1.205 28 H -0.206 1.206 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.137 0.863 39 H 0.133 0.867 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.249 0.751 43 H 0.010 0.990 44 H 0.010 0.990 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.429 17.819 19.383 30.517 hybrid contribution 0.050 -1.478 -0.308 1.510 sum 15.479 16.342 19.076 29.505 Atomic orbital electron populations 1.20487 0.85855 1.03996 1.03888 1.22533 0.97783 0.90188 0.98055 1.77246 0.87660 1.23324 1.27498 1.46194 1.07116 1.05225 1.59762 0.70563 1.21374 0.97691 0.85063 0.98818 1.20644 0.92000 0.98193 1.04640 1.19622 0.91635 0.95378 1.19107 1.19101 0.98487 0.90769 0.92380 0.89468 1.22009 0.99408 1.02144 0.97383 1.21691 1.04599 0.86349 1.01633 1.24325 0.73355 0.92881 0.78482 1.90631 1.50714 1.61558 1.37923 1.86584 1.70198 1.25611 1.44408 1.22705 1.02842 0.79957 0.96111 1.20779 0.79650 0.82840 0.88331 1.90685 1.57017 1.50445 1.48393 1.46048 1.57820 1.08286 1.22949 1.18622 0.90169 0.95375 0.81477 1.21649 1.39099 0.92753 1.05834 0.89540 1.26063 0.94746 1.04342 0.94504 1.70140 1.39688 1.38385 1.08655 0.85101 0.77802 0.77421 0.78820 1.17579 1.20547 1.20561 0.89382 0.90614 0.89276 0.88940 0.89088 0.88940 0.92420 0.91570 0.92337 0.86343 0.86680 0.85852 0.85843 0.75119 0.99000 0.99013 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 8.80 71.24 0.63 -0.54 16 2 C 0.08 1.47 7.05 43.10 0.30 1.77 16 3 N -0.33 -6.80 12.70 -47.38 -0.60 -7.40 16 4 N -0.47 -6.85 7.36 -48.00 -0.35 -7.20 16 5 H 0.45 3.71 8.96 -213.33 -1.91 1.80 16 6 C 0.10 1.35 7.21 41.41 0.30 1.65 16 7 C -0.10 -0.65 10.11 71.23 0.72 0.07 16 8 C -0.25 -3.97 4.80 -20.14 -0.10 -4.07 16 9 C 0.01 0.19 2.14 -11.54 -0.02 0.17 16 10 H 0.09 1.33 6.51 -2.39 -0.02 1.32 16 11 C -0.15 -2.41 8.73 71.98 0.63 -1.79 16 12 C -0.11 -1.80 5.12 29.85 0.15 -1.65 16 13 C 0.47 10.78 7.68 71.24 0.55 11.32 16 14 O -0.52 -13.02 13.82 21.97 0.30 -12.72 16 15 O -0.35 -10.25 9.75 -44.99 -0.44 -10.69 16 16 C 0.06 1.68 5.94 71.24 0.42 2.10 16 17 C 0.50 19.69 7.91 87.66 0.69 20.39 16 18 O -0.58 -29.25 16.50 15.78 0.26 -28.99 16 19 N -0.70 -28.54 5.55 -466.79 -2.59 -31.13 16 20 C 0.27 14.28 5.43 85.63 0.46 14.75 16 21 C -0.56 -29.54 9.28 25.60 0.24 -29.30 16 22 H 0.09 4.12 7.60 -2.91 -0.02 4.10 16 23 C 0.00 0.17 5.46 84.65 0.46 0.63 16 24 N -0.93 -55.38 13.29 21.45 0.28 -55.10 16 25 Si 0.99 41.66 29.54 68.60 2.03 43.68 16 26 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 27 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 28 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 29 H 0.09 1.04 8.07 -2.39 -0.02 1.02 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.09 1.07 4.58 -2.39 -0.01 1.06 16 32 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.09 0.62 7.06 -2.38 -0.02 0.60 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 0.92 5.48 -2.39 -0.01 0.91 16 37 H 0.06 1.11 6.11 -2.38 -0.01 1.09 16 38 H 0.12 1.80 5.76 -2.38 -0.01 1.78 16 39 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.12 2.80 8.13 -2.38 -0.02 2.78 16 41 H 0.12 2.80 8.13 -2.39 -0.02 2.78 16 42 H 0.41 13.45 8.32 -92.71 -0.77 12.68 16 43 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 44 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 45 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -78.32 375.49 2.69 -75.62 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -1.63 Total: 18.41 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 5.44 Total: 15.51 kcal Atomic # 7 Polarization: -97.57 SS G_CDS: -3.26 Total: -100.83 kcal Atomic # 8 Polarization: -52.52 SS G_CDS: 0.13 Total: -52.40 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Total: -78.32 2.69 -75.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772028624.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.386 kcal (2) G-P(sol) polarization free energy of solvation -78.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds