Wall clock time and date at job start Tue Mar 31 2020 14:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42900 * 113.99581 * 2 1 4 4 C 1.53002 * 109.46879 * 201.05779 * 3 2 1 5 5 O 1.42896 * 109.47242 * 299.99761 * 4 3 2 6 6 C 1.42899 * 114.00292 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47395 * 180.02562 * 6 5 4 8 8 N 1.46493 * 109.47042 * 64.99667 * 7 6 5 9 9 C 1.34783 * 120.00073 * 179.97438 * 8 7 6 10 10 O 1.21589 * 119.99775 * 0.02562 * 9 8 7 11 11 C 1.47634 * 120.00246 * 180.02562 * 9 8 7 12 12 C 1.40016 * 119.89585 * 0.24793 * 11 9 8 13 13 C 1.36317 * 120.10450 * 180.25688 * 12 11 9 14 14 C 1.40883 * 119.89531 * 359.47504 * 13 12 11 15 15 C 1.41108 * 120.10564 * 180.29753 * 14 13 12 16 16 H 1.08009 * 119.99849 * 156.94044 * 15 14 13 17 17 C 1.40219 * 120.00166 * 336.94800 * 15 14 13 18 18 N 1.30646 * 119.99774 * 341.75095 * 17 15 14 19 19 Si 1.86803 * 120.00112 * 161.75199 * 17 15 14 20 20 H 1.48490 * 109.47051 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.46750 * 120.00234 * 19 17 15 22 22 H 1.48498 * 109.47048 * 239.99749 * 19 17 15 23 23 C 1.40891 * 119.79230 * 0.28159 * 14 13 12 24 24 C 1.36318 * 119.89116 * 359.97438 * 23 14 13 25 25 O 1.42898 * 109.47251 * 81.05509 * 3 2 1 26 26 C 1.42897 * 114.00252 * 283.87116 * 25 3 2 27 27 H 1.09003 * 109.46219 * 178.00911 * 1 2 3 28 28 H 1.09000 * 109.46885 * 298.00541 * 1 2 3 29 29 H 1.08995 * 109.46968 * 58.01262 * 1 2 3 30 30 H 1.09004 * 109.47320 * 321.05769 * 3 2 1 31 31 H 1.09008 * 109.46713 * 179.97438 * 4 3 2 32 32 H 1.09004 * 109.47268 * 60.00237 * 4 3 2 33 33 H 1.09004 * 109.46572 * 59.99815 * 6 5 4 34 34 H 1.09006 * 109.46968 * 300.00442 * 6 5 4 35 35 H 1.09007 * 109.46792 * 304.99606 * 7 6 5 36 36 H 1.09000 * 109.47176 * 185.00203 * 7 6 5 37 37 H 0.96999 * 120.00639 * 0.02562 * 8 7 6 38 38 H 1.07998 * 119.94519 * 0.03329 * 12 11 9 39 39 H 1.08000 * 120.05271 * 179.75231 * 13 12 11 40 40 H 0.97007 * 120.00097 * 180.02562 * 18 17 15 41 41 H 1.07997 * 120.05760 * 180.02562 * 23 14 13 42 42 H 1.07996 * 119.94766 * 180.02562 * 24 23 14 43 43 H 1.08998 * 109.47277 * 321.85198 * 26 25 3 44 44 H 1.09005 * 109.46592 * 81.84864 * 26 25 3 45 45 H 1.09001 * 109.47480 * 201.84803 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.4475 1.2239 -0.5183 5 8 4.2111 0.3627 0.3285 6 6 5.5758 0.2171 -0.0693 7 6 6.2931 -0.7216 0.9029 8 7 5.7148 -2.0638 0.8021 9 6 6.1924 -3.0628 1.5704 10 8 7.1030 -2.8500 2.3475 11 6 5.6100 -4.4156 1.4684 12 6 4.5650 -4.6595 0.5691 13 6 4.0205 -5.9057 0.4752 14 6 4.5184 -6.9517 1.2770 15 6 3.9623 -8.2449 1.1789 16 1 4.5405 -9.1057 1.4811 17 6 2.6592 -8.4124 0.6889 18 7 1.8370 -7.3976 0.6593 19 14 2.0989 -10.0867 0.0785 20 1 3.2105 -11.0614 0.2170 21 1 0.9366 -10.5429 0.8824 22 1 1.7042 -9.9862 -1.3495 23 6 5.5735 -6.7026 2.1768 24 6 6.1081 -5.4519 2.2674 25 8 2.0126 1.8259 1.3309 26 6 0.7350 2.2837 1.7782 27 1 -0.3632 -1.0271 -0.0357 28 1 -0.3633 0.4826 0.9073 29 1 -0.3633 0.5444 -0.8716 30 1 1.4278 1.9625 -0.6459 31 1 3.8906 2.2199 -0.5187 32 1 3.4456 0.8270 -1.5335 33 1 6.0630 1.1922 -0.0597 34 1 5.6185 -0.2004 -1.0753 35 1 6.1744 -0.3502 1.9208 36 1 7.3532 -0.7629 0.6526 37 1 4.9886 -2.2337 0.1819 38 1 4.1872 -3.8582 -0.0486 39 1 3.2118 -6.0919 -0.2159 40 1 0.9354 -7.5135 0.3207 41 1 5.9588 -7.5014 2.7931 42 1 6.9172 -5.2601 2.9566 43 1 0.2151 2.7722 0.9541 44 1 0.1466 1.4349 2.1269 45 1 0.8687 2.9931 2.5949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789916966.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:05 Heat of formation + Delta-G solvation = -177.096451 kcal Electronic energy + Delta-G solvation = -27006.116056 eV Core-core repulsion = 22987.916233 eV Total energy + Delta-G solvation = -4018.199823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.77797 -40.32402 -39.03235 -38.49786 -36.96449 -35.66789 -35.62880 -32.40003 -31.38912 -31.24663 -29.77314 -27.68734 -27.37666 -26.93316 -24.22860 -23.33224 -23.13828 -22.62049 -21.26481 -19.36265 -18.64441 -18.52211 -18.45942 -17.42608 -17.18028 -17.09579 -16.89274 -16.12111 -15.78487 -15.74849 -15.54346 -15.29535 -15.04639 -14.99559 -14.52372 -14.43907 -14.06930 -13.95601 -13.83048 -13.57972 -13.30285 -13.18739 -13.01918 -12.83244 -12.62554 -12.37012 -12.32929 -12.24641 -12.08412 -11.75409 -11.37017 -11.10223 -11.00151 -10.77518 -10.73708 -10.52263 -10.03101 -9.56059 -9.39839 -8.78058 -6.47023 0.46058 1.16570 1.39234 1.43100 1.56579 2.13700 2.18894 2.43599 2.61084 2.66746 2.80520 2.83714 3.71131 3.75010 3.85931 4.15239 4.22804 4.23423 4.30262 4.32797 4.35855 4.38637 4.46230 4.46686 4.49073 4.52611 4.54269 4.69069 4.74294 4.90918 4.93360 4.93816 5.03878 5.18128 5.31841 5.57985 5.62171 5.84196 5.96802 6.01200 6.02985 6.09095 6.23156 6.32762 6.55267 6.73349 6.78207 6.90577 7.46677 8.16647 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.010854 B = 0.003143 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.118791 B = 8906.216046 C =10908.630801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.413 6.413 3 C 0.235 3.765 4 C 0.071 3.929 5 O -0.397 6.397 6 C 0.056 3.944 7 C 0.122 3.878 8 N -0.720 5.720 9 C 0.569 3.431 10 O -0.609 6.609 11 C -0.296 4.296 12 C -0.052 4.052 13 C -0.199 4.199 14 C 0.101 3.899 15 C -0.471 4.471 16 H 0.086 0.914 17 C 0.037 3.963 18 N -0.797 5.797 19 Si 0.990 3.010 20 H -0.256 1.256 21 H -0.263 1.263 22 H -0.259 1.259 23 C -0.255 4.255 24 C -0.033 4.033 25 O -0.412 6.412 26 C 0.015 3.985 27 H 0.084 0.916 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.087 0.913 37 H 0.407 0.593 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.297 0.703 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.068 0.932 44 H 0.043 0.957 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.351 18.145 -8.559 21.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.334 6.334 3 C 0.140 3.860 4 C -0.005 4.005 5 O -0.316 6.316 6 C -0.020 4.020 7 C -0.001 4.001 8 N -0.372 5.372 9 C 0.362 3.638 10 O -0.494 6.494 11 C -0.300 4.300 12 C -0.071 4.071 13 C -0.219 4.219 14 C 0.097 3.903 15 C -0.498 4.498 16 H 0.104 0.896 17 C -0.182 4.182 18 N -0.421 5.421 19 Si 0.809 3.191 20 H -0.180 1.180 21 H -0.188 1.188 22 H -0.184 1.184 23 C -0.274 4.274 24 C -0.052 4.052 25 O -0.333 6.333 26 C -0.080 4.080 27 H 0.103 0.897 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.119 0.881 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.243 0.757 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.108 0.892 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.086 0.914 44 H 0.062 0.938 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.774 18.186 -7.816 20.619 hybrid contribution -1.001 -0.475 -0.342 1.159 sum -6.775 17.710 -8.158 20.642 Atomic orbital electron populations 1.23266 0.79936 1.04010 1.01508 1.88157 1.21276 1.30129 1.93851 1.23908 0.94680 0.83057 0.84324 1.22785 0.87876 0.95721 0.94149 1.88105 1.21989 1.68233 1.53303 1.22825 0.82256 0.99573 0.97374 1.21421 0.97560 0.81076 1.00082 1.45729 1.39215 1.09197 1.43068 1.18430 0.81237 0.85205 0.78903 1.90594 1.32923 1.84955 1.40955 1.19204 1.07139 0.93387 1.10306 1.20693 0.93803 0.96612 0.96031 1.21041 1.03961 0.93397 1.03467 1.18138 0.90047 0.93967 0.88100 1.20152 0.99160 0.93882 1.36599 0.89572 1.26981 0.95804 1.03225 0.92237 1.69790 1.06818 1.34744 1.30705 0.85038 0.78876 0.76267 0.78885 1.17986 1.18785 1.18358 1.20853 1.04965 0.96580 1.05008 1.20505 0.96483 0.92506 0.95685 1.88107 1.32042 1.79791 1.33354 1.23194 0.84762 0.99119 1.00961 0.89742 0.92698 0.91428 0.88096 0.88890 0.89426 0.88790 0.90848 0.93010 0.89526 0.75682 0.86560 0.86620 0.89175 0.87633 0.87916 0.91358 0.93834 0.88861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 10.58 113.37 1.20 1.35 16 2 O -0.41 -10.77 10.48 -121.88 -1.28 -12.05 16 3 C 0.24 4.71 3.18 71.98 0.23 4.94 16 4 C 0.07 1.29 6.03 71.98 0.43 1.72 16 5 O -0.40 -10.48 10.07 -129.37 -1.30 -11.79 16 6 C 0.06 1.16 6.07 71.98 0.44 1.60 16 7 C 0.12 3.57 6.06 86.38 0.52 4.09 16 8 N -0.72 -26.29 5.45 -466.17 -2.54 -28.83 16 9 C 0.57 26.17 7.76 86.72 0.67 26.84 16 10 O -0.61 -31.07 16.32 -3.99 -0.07 -31.14 16 11 C -0.30 -14.57 5.89 -19.93 -0.12 -14.69 16 12 C -0.05 -2.49 9.47 22.25 0.21 -2.28 16 13 C -0.20 -10.37 8.65 22.47 0.19 -10.17 16 14 C 0.10 5.43 5.59 -21.28 -0.12 5.32 16 15 C -0.47 -24.40 9.05 23.46 0.21 -24.18 16 16 H 0.09 4.27 7.91 -2.91 -0.02 4.25 16 17 C 0.04 1.73 5.14 85.35 0.44 2.17 16 18 N -0.80 -39.09 10.87 21.87 0.24 -38.85 16 19 Si 0.99 35.33 29.60 68.60 2.03 37.36 16 20 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 21 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 22 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 23 C -0.25 -13.20 9.73 22.47 0.22 -12.98 16 24 C -0.03 -1.66 9.52 22.25 0.21 -1.44 16 25 O -0.41 -9.87 10.49 -121.88 -1.28 -11.15 16 26 C 0.02 0.24 9.86 113.37 1.12 1.36 16 27 H 0.08 1.62 8.14 -2.39 -0.02 1.61 16 28 H 0.05 0.90 4.88 -2.39 -0.01 0.89 16 29 H 0.07 0.82 8.05 -2.39 -0.02 0.80 16 30 H 0.10 1.22 7.46 -2.39 -0.02 1.20 16 31 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.09 1.23 8.14 -2.38 -0.02 1.22 16 33 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.41 13.85 6.47 -92.71 -0.60 13.25 16 38 H 0.12 4.75 6.37 -2.91 -0.02 4.73 16 39 H 0.12 6.07 6.05 -2.91 -0.02 6.05 16 40 H 0.30 12.85 8.29 -92.70 -0.77 12.08 16 41 H 0.11 5.10 8.06 -2.91 -0.02 5.08 16 42 H 0.10 5.07 7.63 -2.91 -0.02 5.05 16 43 H 0.07 0.68 7.67 -2.39 -0.02 0.66 16 44 H 0.04 0.74 6.10 -2.38 -0.01 0.73 16 45 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -72.96 377.28 2.08 -70.88 By element: Atomic # 1 Polarization: 41.51 SS G_CDS: 0.41 Total: 41.92 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: 5.86 Total: -16.36 kcal Atomic # 7 Polarization: -65.37 SS G_CDS: -2.30 Total: -67.68 kcal Atomic # 8 Polarization: -62.20 SS G_CDS: -3.93 Total: -66.12 kcal Atomic # 14 Polarization: 35.33 SS G_CDS: 2.03 Total: 37.36 kcal Total: -72.96 2.08 -70.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789916966.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.213 kcal (2) G-P(sol) polarization free energy of solvation -72.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds