Wall clock time and date at job start Tue Mar 31 2020 13:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46493 * 109.47595 * 2 1 4 4 C 1.46505 * 120.00272 * 270.00051 * 3 2 1 5 5 C 1.50700 * 109.47288 * 270.00017 * 4 3 2 6 6 H 1.08000 * 119.99739 * 359.97438 * 5 4 3 7 7 C 1.37868 * 120.00011 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00366 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99953 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47184 * 89.99579 * 9 7 5 11 11 H 1.48506 * 109.47111 * 210.00152 * 9 7 5 12 12 H 1.48505 * 109.46995 * 329.99511 * 9 7 5 13 13 C 1.34775 * 120.00301 * 89.99808 * 3 2 1 14 14 O 1.21274 * 120.00449 * 180.02562 * 13 3 2 15 15 C 1.50699 * 119.99623 * 0.02562 * 13 3 2 16 16 O 1.45203 * 109.47175 * 180.02562 * 15 13 3 17 17 C 1.34903 * 116.99978 * 179.97438 * 16 15 13 18 18 O 1.21620 * 120.00227 * 359.97438 * 17 16 15 19 19 C 1.46469 * 119.99846 * 179.97438 * 17 16 15 20 20 O 1.34941 * 125.99557 * 359.97327 * 19 17 16 21 21 C 1.33913 * 109.37835 * 180.02562 * 20 19 17 22 22 C 1.35164 * 108.78031 * 359.72242 * 21 20 19 23 23 C 1.36635 * 125.99744 * 180.02562 * 19 17 16 24 24 C 1.50708 * 126.64861 * 359.97438 * 23 19 17 25 25 C 1.52997 * 109.47141 * 240.00350 * 24 23 19 26 26 C 1.52992 * 109.47025 * 119.99957 * 24 23 19 27 27 H 1.09001 * 109.47007 * 300.00332 * 1 2 3 28 28 H 1.09004 * 109.46725 * 59.99755 * 1 2 3 29 29 H 1.08995 * 109.47627 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47007 * 239.99668 * 2 1 3 31 31 H 1.09000 * 109.47449 * 120.00240 * 2 1 3 32 32 H 1.09005 * 109.46875 * 29.99942 * 4 3 2 33 33 H 1.09000 * 109.47073 * 149.99606 * 4 3 2 34 34 H 0.96997 * 119.99920 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47885 * 59.99734 * 15 13 3 36 36 H 1.09002 * 109.47225 * 299.99692 * 15 13 3 37 37 H 1.08001 * 125.60993 * 180.02562 * 21 20 19 38 38 H 1.08006 * 126.43760 * 180.26359 * 22 21 20 39 39 H 1.09002 * 109.46828 * 0.02562 * 24 23 19 40 40 H 1.09002 * 109.47153 * 299.99670 * 25 24 23 41 41 H 1.09001 * 109.46832 * 179.97438 * 25 24 23 42 42 H 1.09004 * 109.47261 * 59.99842 * 25 24 23 43 43 H 1.09001 * 109.47066 * 180.02562 * 26 24 23 44 44 H 1.08996 * 109.47747 * 300.00019 * 26 24 23 45 45 H 1.09002 * 109.47103 * 60.00431 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7038 6 1 4.3429 1.2307 -1.0958 7 6 4.1492 2.3895 -2.8779 8 7 3.3489 3.1249 -3.6186 9 14 5.9136 2.0964 -3.4169 10 1 5.9776 0.8751 -4.2590 11 1 6.3923 3.2637 -4.2003 12 1 6.7737 1.9177 -2.2195 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1600 1.1672 15 6 1.9923 1.3059 2.4722 16 8 2.3062 2.1957 3.5759 17 6 2.1341 1.7096 4.8225 18 8 1.7321 0.5729 4.9819 19 6 2.4314 2.5509 5.9841 20 8 2.8816 3.8225 5.9480 21 6 3.0411 4.2730 7.1989 22 6 2.6882 3.2947 8.0621 23 6 2.3025 2.1855 7.2943 24 6 1.8309 0.8518 7.8141 25 6 0.5766 1.0515 8.6672 26 6 2.9321 0.2184 8.6666 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.5817 1.6877 -2.0284 33 1 2.0957 3.1410 -1.1384 34 1 3.6749 3.5147 -4.4448 35 1 2.6227 0.4186 2.5299 36 1 0.9444 1.0115 2.5302 37 1 3.3894 5.2579 7.4729 38 1 2.7034 3.3543 9.1404 39 1 1.5992 0.1961 6.9747 40 1 0.8087 1.7071 9.5066 41 1 0.2353 0.0868 9.0427 42 1 -0.2079 1.5028 8.0598 43 1 2.5912 -0.7464 9.0422 44 1 3.8256 0.0761 8.0589 45 1 3.1642 0.8740 9.5060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792600469.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:01 Heat of formation + Delta-G solvation = -109.948679 kcal Electronic energy + Delta-G solvation = -27343.910531 eV Core-core repulsion = 23328.622454 eV Total energy + Delta-G solvation = -4015.288077 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.01225 -40.38938 -38.93069 -36.92193 -35.99516 -35.30317 -32.84582 -32.10213 -30.58970 -30.16186 -28.98572 -27.38920 -26.60279 -24.24480 -23.08038 -22.97705 -22.49301 -21.09219 -19.94682 -18.70574 -18.37012 -17.03240 -16.97173 -16.54238 -16.36162 -15.98742 -15.93238 -15.29855 -14.88039 -14.46152 -14.29720 -14.14846 -13.63066 -13.48237 -13.45637 -13.31111 -12.94692 -12.82898 -12.61728 -12.49048 -12.15287 -12.06311 -11.66924 -11.60394 -11.51186 -11.42997 -11.23752 -10.95103 -10.90040 -10.64180 -10.53855 -10.42081 -10.14853 -10.01079 -9.66365 -9.00919 -8.97029 -8.44864 -7.75975 -6.05897 -4.10779 0.64756 2.01048 2.11541 2.69671 2.80664 3.24281 3.30112 3.36982 3.42150 3.86546 4.26066 4.40193 4.43778 4.61997 4.84039 4.90499 4.93640 5.04290 5.09840 5.18246 5.22314 5.28811 5.34067 5.35984 5.36868 5.56154 5.56952 5.57977 5.67698 5.72525 5.79996 5.96352 5.98830 6.00500 6.04101 6.18677 6.29054 6.44351 6.64129 6.98951 7.39406 7.45785 7.55777 7.90181 8.20141 8.28683 8.84112 8.98869 9.54316 11.02301 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.017921 B = 0.002725 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.023744 B =10272.925948 C =10999.156324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.516 6.516 15 C 0.050 3.950 16 O -0.317 6.317 17 C 0.552 3.448 18 O -0.490 6.490 19 C -0.065 4.065 20 O -0.143 6.143 21 C 0.011 3.989 22 C -0.226 4.226 23 C -0.064 4.064 24 C -0.055 4.055 25 C -0.139 4.139 26 C -0.139 4.139 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.214 0.786 38 H 0.158 0.842 39 H 0.109 0.891 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.310 -5.129 24.155 25.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.392 6.392 15 C -0.028 4.028 16 O -0.231 6.231 17 C 0.397 3.603 18 O -0.380 6.380 19 C -0.115 4.115 20 O -0.037 6.037 21 C -0.060 4.060 22 C -0.245 4.245 23 C -0.066 4.066 24 C -0.073 4.073 25 C -0.196 4.196 26 C -0.196 4.196 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.230 0.770 38 H 0.176 0.824 39 H 0.127 0.873 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.163 -4.581 23.664 24.650 hybrid contribution 0.958 -0.212 -0.262 1.016 sum -4.205 -4.794 23.402 24.255 Atomic orbital electron populations 1.22236 0.96516 1.01707 1.02439 1.21514 0.93770 0.83932 1.03062 1.48206 1.63857 1.13421 1.07071 1.19339 0.96487 0.93731 0.77520 1.21428 0.96860 1.32093 1.06336 0.92376 1.24931 0.97924 0.94836 0.96364 1.69931 1.35734 1.33374 1.14284 0.86485 0.84597 0.77676 0.78604 1.20625 1.21058 1.19855 1.19663 0.79839 0.87176 0.84238 1.90729 1.44326 1.17457 1.86664 1.23066 1.02945 0.92587 0.84166 1.86738 1.78224 1.44445 1.13741 1.19235 0.74632 0.84288 0.82109 1.90854 1.43561 1.17668 1.85943 1.20478 1.13309 0.84955 0.92800 1.84246 1.63977 1.25280 1.30215 1.24543 1.00561 1.00411 0.80476 1.21652 1.08458 0.93201 1.01233 1.20608 0.98388 0.97453 0.90156 1.20067 0.95574 0.91636 1.00028 1.21776 0.96617 1.01877 0.99334 1.21776 0.98104 1.00410 0.99346 0.93121 0.91776 0.91868 0.89378 0.91727 0.94583 0.93688 0.92667 0.88320 0.88412 0.76989 0.82430 0.87283 0.92627 0.91997 0.92563 0.91993 0.92536 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.24 37.16 0.38 -1.87 16 2 C 0.10 1.59 5.93 -4.05 -0.02 1.57 16 3 N -0.59 -12.48 2.46 -175.06 -0.43 -12.91 16 4 C 0.25 6.44 5.16 -5.19 -0.03 6.41 16 5 C -0.53 -14.96 9.39 -34.44 -0.32 -15.28 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 9 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.51 10.92 7.75 -10.99 -0.09 10.83 16 14 O -0.52 -13.64 16.08 -14.10 -0.23 -13.86 16 15 C 0.05 0.82 4.51 36.01 0.16 0.99 16 16 O -0.32 -5.71 9.77 -48.37 -0.47 -6.18 16 17 C 0.55 8.63 7.93 34.05 0.27 8.90 16 18 O -0.49 -7.55 14.20 -19.36 -0.27 -7.83 16 19 C -0.07 -0.91 7.18 -36.85 -0.26 -1.17 16 20 O -0.14 -1.92 10.67 4.73 0.05 -1.87 16 21 C 0.01 0.10 12.08 29.64 0.36 0.45 16 22 C -0.23 -1.95 10.41 -39.90 -0.42 -2.36 16 23 C -0.06 -0.71 4.87 -104.42 -0.51 -1.22 16 24 C -0.05 -0.54 3.19 -91.77 -0.29 -0.83 16 25 C -0.14 -1.10 9.09 37.16 0.34 -0.76 16 26 C -0.14 -1.12 9.10 37.15 0.34 -0.78 16 27 H 0.05 0.64 7.22 -51.93 -0.38 0.27 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 31 H 0.06 0.85 6.44 -51.93 -0.33 0.51 16 32 H 0.04 0.93 8.07 -51.93 -0.42 0.52 16 33 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.10 1.45 7.40 -51.93 -0.38 1.06 16 36 H 0.10 1.38 7.18 -51.93 -0.37 1.00 16 37 H 0.21 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.16 0.91 8.06 -52.48 -0.42 0.49 16 39 H 0.11 1.28 5.48 -51.93 -0.28 0.99 16 40 H 0.05 0.37 8.05 -51.93 -0.42 -0.05 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.05 0.38 8.06 -51.93 -0.42 -0.04 16 LS Contribution 384.08 15.07 5.79 5.79 Total: -1.00 -35.08 384.08 -6.78 -41.86 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -6.74 Total: -2.63 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -0.19 Total: 6.54 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.31 Total: -38.71 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.92 Total: -29.74 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.08 -6.78 -41.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792600469.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.088 kcal (2) G-P(sol) polarization free energy of solvation -35.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds