Wall clock time and date at job start Tue Mar 31 2020 13:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46493 * 109.47595 * 2 1 4 4 C 1.46505 * 120.00272 * 270.00051 * 3 2 1 5 5 C 1.50700 * 109.47288 * 270.00017 * 4 3 2 6 6 H 1.08000 * 119.99739 * 359.97438 * 5 4 3 7 7 C 1.37868 * 120.00011 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00366 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99953 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47184 * 89.99579 * 9 7 5 11 11 H 1.48506 * 109.47111 * 210.00152 * 9 7 5 12 12 H 1.48505 * 109.46995 * 329.99511 * 9 7 5 13 13 C 1.34775 * 120.00301 * 89.99808 * 3 2 1 14 14 O 1.21274 * 120.00449 * 180.02562 * 13 3 2 15 15 C 1.50699 * 119.99623 * 0.02562 * 13 3 2 16 16 O 1.45203 * 109.47175 * 180.02562 * 15 13 3 17 17 C 1.34903 * 116.99978 * 179.97438 * 16 15 13 18 18 O 1.21620 * 120.00227 * 359.97438 * 17 16 15 19 19 C 1.46469 * 119.99846 * 179.97438 * 17 16 15 20 20 O 1.34941 * 125.99557 * 359.97327 * 19 17 16 21 21 C 1.33913 * 109.37835 * 180.02562 * 20 19 17 22 22 C 1.35164 * 108.78031 * 359.72242 * 21 20 19 23 23 C 1.36635 * 125.99744 * 180.02562 * 19 17 16 24 24 C 1.50708 * 126.64861 * 359.97438 * 23 19 17 25 25 C 1.52997 * 109.47141 * 240.00350 * 24 23 19 26 26 C 1.52992 * 109.47025 * 119.99957 * 24 23 19 27 27 H 1.09001 * 109.47007 * 300.00332 * 1 2 3 28 28 H 1.09004 * 109.46725 * 59.99755 * 1 2 3 29 29 H 1.08995 * 109.47627 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47007 * 239.99668 * 2 1 3 31 31 H 1.09000 * 109.47449 * 120.00240 * 2 1 3 32 32 H 1.09005 * 109.46875 * 29.99942 * 4 3 2 33 33 H 1.09000 * 109.47073 * 149.99606 * 4 3 2 34 34 H 0.96997 * 119.99920 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47885 * 59.99734 * 15 13 3 36 36 H 1.09002 * 109.47225 * 299.99692 * 15 13 3 37 37 H 1.08001 * 125.60993 * 180.02562 * 21 20 19 38 38 H 1.08006 * 126.43760 * 180.26359 * 22 21 20 39 39 H 1.09002 * 109.46828 * 0.02562 * 24 23 19 40 40 H 1.09002 * 109.47153 * 299.99670 * 25 24 23 41 41 H 1.09001 * 109.46832 * 179.97438 * 25 24 23 42 42 H 1.09004 * 109.47261 * 59.99842 * 25 24 23 43 43 H 1.09001 * 109.47066 * 180.02562 * 26 24 23 44 44 H 1.08996 * 109.47747 * 300.00019 * 26 24 23 45 45 H 1.09002 * 109.47103 * 60.00431 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7038 6 1 4.3429 1.2307 -1.0958 7 6 4.1492 2.3895 -2.8779 8 7 3.3489 3.1249 -3.6186 9 14 5.9136 2.0964 -3.4169 10 1 5.9776 0.8751 -4.2590 11 1 6.3923 3.2637 -4.2003 12 1 6.7737 1.9177 -2.2195 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1600 1.1672 15 6 1.9923 1.3059 2.4722 16 8 2.3062 2.1957 3.5759 17 6 2.1341 1.7096 4.8225 18 8 1.7321 0.5729 4.9819 19 6 2.4314 2.5509 5.9841 20 8 2.8816 3.8225 5.9480 21 6 3.0411 4.2730 7.1989 22 6 2.6882 3.2947 8.0621 23 6 2.3025 2.1855 7.2943 24 6 1.8309 0.8518 7.8141 25 6 0.5766 1.0515 8.6672 26 6 2.9321 0.2184 8.6666 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.5817 1.6877 -2.0284 33 1 2.0957 3.1410 -1.1384 34 1 3.6749 3.5147 -4.4448 35 1 2.6227 0.4186 2.5299 36 1 0.9444 1.0115 2.5302 37 1 3.3894 5.2579 7.4729 38 1 2.7034 3.3543 9.1404 39 1 1.5992 0.1961 6.9747 40 1 0.8087 1.7071 9.5066 41 1 0.2353 0.0868 9.0427 42 1 -0.2079 1.5028 8.0598 43 1 2.5912 -0.7464 9.0422 44 1 3.8256 0.0761 8.0589 45 1 3.1642 0.8740 9.5060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792600469.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:00 Heat of formation + Delta-G solvation = -130.939522 kcal Electronic energy + Delta-G solvation = -27344.820763 eV Core-core repulsion = 23328.622454 eV Total energy + Delta-G solvation = -4016.198308 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.85165 -41.66998 -40.54334 -38.01419 -37.09802 -36.84552 -34.95554 -32.84548 -31.85386 -31.47405 -30.39337 -28.42139 -27.99165 -25.46258 -24.67389 -24.05293 -23.71399 -22.04421 -20.85037 -20.23504 -19.47471 -18.66776 -18.25379 -18.08409 -17.78295 -17.22378 -17.07361 -16.78511 -16.21192 -15.92966 -15.61467 -14.95586 -14.82646 -14.73812 -14.57088 -14.23730 -14.12254 -13.95453 -13.92932 -13.62744 -13.52426 -13.30139 -13.09598 -13.03496 -12.69898 -12.52868 -12.52147 -12.26056 -12.17993 -12.16902 -12.10911 -11.84685 -11.74308 -11.30601 -10.78068 -10.75532 -10.65576 -9.80654 -9.57514 -8.24719 -6.39333 -0.30304 1.00355 1.25532 1.35704 1.39039 1.48857 1.57202 1.69373 1.84972 2.32756 2.45193 3.05351 3.37739 3.49532 3.58923 3.73678 3.86452 3.91783 4.13241 4.26916 4.27013 4.34753 4.36885 4.42703 4.58025 4.67459 4.78955 4.82370 4.88116 4.93392 4.97905 4.99962 5.01726 5.04450 5.17786 5.20466 5.33489 5.35512 5.37636 5.46882 5.52432 5.77539 5.83899 6.02390 6.39004 6.58475 6.69582 7.18150 7.34306 8.82896 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.017921 B = 0.002725 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.023744 B =10272.925948 C =10999.156324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.093 3.907 3 N -0.594 5.594 4 C 0.262 3.738 5 C -0.546 4.546 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.274 1.274 13 C 0.499 3.501 14 O -0.579 6.579 15 C 0.062 3.938 16 O -0.346 6.346 17 C 0.550 3.450 18 O -0.496 6.496 19 C -0.117 4.117 20 O -0.176 6.176 21 C 0.025 3.975 22 C -0.226 4.226 23 C -0.049 4.049 24 C -0.060 4.060 25 C -0.135 4.135 26 C -0.135 4.135 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.032 0.968 33 H -0.002 1.002 34 H 0.268 0.732 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.256 0.744 38 H 0.194 0.806 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.043 0.957 43 H 0.074 0.926 44 H 0.042 0.958 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.898 -6.544 26.934 28.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.029 4.029 3 N -0.326 5.326 4 C 0.142 3.858 5 C -0.584 4.584 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.793 3.207 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.199 1.199 13 C 0.286 3.714 14 O -0.459 6.459 15 C -0.014 4.014 16 O -0.262 6.262 17 C 0.397 3.603 18 O -0.388 6.388 19 C -0.167 4.167 20 O -0.071 6.071 21 C -0.045 4.045 22 C -0.245 4.245 23 C -0.051 4.051 24 C -0.078 4.078 25 C -0.192 4.192 26 C -0.192 4.192 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.118 0.882 30 H 0.102 0.898 31 H 0.117 0.883 32 H 0.050 0.950 33 H 0.017 0.983 34 H 0.077 0.923 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.272 0.728 38 H 0.211 0.789 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.062 0.938 43 H 0.093 0.907 44 H 0.061 0.939 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.785 -6.066 26.457 27.562 hybrid contribution 0.798 0.271 -1.011 1.316 sum -3.987 -5.795 25.446 26.401 Atomic orbital electron populations 1.22180 0.94254 1.03874 1.01837 1.21894 0.95622 0.80841 1.04540 1.48206 1.63504 1.15328 1.05542 1.18807 0.95673 0.91640 0.79716 1.21700 0.97809 1.32290 1.06649 0.92774 1.25853 1.02458 0.94364 0.96378 1.70048 1.37809 1.34088 1.14749 0.85403 0.78869 0.78279 0.78183 1.18615 1.20593 1.19909 1.20511 0.78423 0.86641 0.85860 1.90687 1.47167 1.20282 1.87741 1.22940 1.05136 0.91903 0.81452 1.86726 1.79037 1.45514 1.14888 1.19531 0.74415 0.84709 0.81658 1.90829 1.44212 1.17834 1.85889 1.20463 1.17382 0.85834 0.92975 1.84221 1.64884 1.25373 1.32657 1.25562 0.98035 1.01882 0.78980 1.22058 1.07809 0.91847 1.02765 1.21019 0.96140 0.98518 0.89443 1.20138 0.97115 0.90657 0.99888 1.21759 0.95167 1.02975 0.99268 1.21760 0.96803 1.01381 0.99284 0.92458 0.93695 0.88220 0.89842 0.88290 0.95047 0.98339 0.92315 0.85906 0.85478 0.72791 0.78923 0.89674 0.90808 0.90726 0.93773 0.90712 0.93900 0.90804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 10.24 71.98 0.74 -3.31 16 2 C 0.09 2.83 5.93 86.38 0.51 3.34 16 3 N -0.59 -25.74 2.46 -826.17 -2.03 -27.77 16 4 C 0.26 14.35 5.16 85.63 0.44 14.79 16 5 C -0.55 -31.89 9.39 25.60 0.24 -31.65 16 6 H 0.05 3.13 7.81 -2.91 -0.02 3.10 16 7 C 0.01 0.50 5.46 84.65 0.46 0.96 16 8 N -0.93 -56.53 13.29 21.44 0.28 -56.25 16 9 Si 0.97 45.41 29.54 68.60 2.03 47.44 16 10 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 13 C 0.50 22.28 7.75 87.66 0.68 22.96 16 14 O -0.58 -32.51 16.08 15.79 0.25 -32.26 16 15 C 0.06 2.06 4.51 71.24 0.32 2.38 16 16 O -0.35 -12.89 9.77 -51.17 -0.50 -13.39 16 17 C 0.55 17.62 7.93 69.97 0.55 18.18 16 18 O -0.50 -15.36 14.20 19.44 0.28 -15.09 16 19 C -0.12 -3.30 7.18 24.04 0.17 -3.13 16 20 O -0.18 -4.73 10.67 -4.92 -0.05 -4.78 16 21 C 0.02 0.38 12.08 67.11 0.81 1.19 16 22 C -0.23 -3.23 10.41 22.06 0.23 -3.00 16 23 C -0.05 -1.03 4.87 -19.73 -0.10 -1.13 16 24 C -0.06 -1.07 3.19 -11.54 -0.04 -1.11 16 25 C -0.13 -1.81 9.09 71.98 0.65 -1.16 16 26 C -0.14 -1.86 9.10 71.98 0.65 -1.21 16 27 H 0.06 1.35 7.22 -2.39 -0.02 1.33 16 28 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.08 2.63 8.07 -2.39 -0.02 2.61 16 31 H 0.10 2.35 6.44 -2.39 -0.02 2.33 16 32 H 0.03 1.72 8.07 -2.38 -0.02 1.70 16 33 H 0.00 -0.10 7.42 -2.39 -0.02 -0.11 16 34 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 35 H 0.12 3.45 7.40 -2.39 -0.02 3.43 16 36 H 0.13 3.43 7.18 -2.39 -0.02 3.41 16 37 H 0.26 1.26 8.06 -2.91 -0.02 1.24 16 38 H 0.19 1.31 8.06 -2.91 -0.02 1.28 16 39 H 0.09 1.97 5.48 -2.39 -0.01 1.95 16 40 H 0.07 0.73 8.05 -2.39 -0.02 0.71 16 41 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 43 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.07 0.75 8.06 -2.39 -0.02 0.73 16 Total: -1.00 -82.30 384.08 7.59 -74.72 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 0.99 Total: 9.26 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: 6.34 Total: 18.11 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -1.74 Total: -84.02 kcal Atomic # 8 Polarization: -65.49 SS G_CDS: -0.02 Total: -65.51 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -82.30 7.59 -74.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792600469.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.222 kcal (2) G-P(sol) polarization free energy of solvation -82.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds