Wall clock time and date at job start Tue Mar 31 2020 14:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35320 * 126.12918 * 2 1 4 4 C 1.50709 * 126.03707 * 0.02562 * 3 2 1 5 5 C 1.50700 * 109.47032 * 85.00280 * 4 3 2 6 6 O 1.20830 * 119.99855 * 0.02562 * 5 4 3 7 7 O 1.34222 * 120.00101 * 179.97438 * 5 4 3 8 8 C 1.45203 * 117.00276 * 180.02562 * 7 5 4 9 9 H 1.09003 * 109.46677 * 30.00443 * 8 7 5 10 10 C 1.52997 * 109.47334 * 270.00365 * 8 7 5 11 11 C 1.50704 * 109.47236 * 150.00063 * 8 7 5 12 12 O 1.21277 * 119.99609 * 16.02554 * 11 8 7 13 13 N 1.34770 * 119.99988 * 196.03074 * 11 8 7 14 14 C 1.46505 * 120.00163 * 5.36190 * 13 11 8 15 15 C 1.46492 * 119.99995 * 185.36709 * 13 11 8 16 16 C 1.50706 * 109.47383 * 89.99778 * 15 13 11 17 17 H 1.08003 * 119.99717 * 0.02562 * 16 15 13 18 18 C 1.37875 * 120.00132 * 180.02562 * 16 15 13 19 19 N 1.31513 * 120.00019 * 179.97438 * 18 16 15 20 20 Si 1.86807 * 120.00100 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46875 * 90.00249 * 20 18 16 22 22 H 1.48497 * 109.47340 * 210.00386 * 20 18 16 23 23 H 1.48503 * 109.46986 * 330.00506 * 20 18 16 24 24 C 1.39865 * 107.92269 * 180.27906 * 3 2 1 25 25 N 1.30843 * 108.19880 * 359.55463 * 24 3 2 26 26 N 1.34949 * 126.12937 * 180.02562 * 2 1 3 27 27 C 1.46504 * 126.03152 * 359.96618 * 26 2 1 28 28 H 1.09005 * 109.47090 * 90.00314 * 1 2 3 29 29 H 1.08995 * 109.47509 * 210.00671 * 1 2 3 30 30 H 1.09005 * 109.47333 * 330.00768 * 1 2 3 31 31 H 1.08998 * 109.46624 * 325.00508 * 4 3 2 32 32 H 1.08996 * 109.46674 * 205.00327 * 4 3 2 33 33 H 1.09005 * 109.46923 * 306.13512 * 10 8 7 34 34 H 1.08996 * 109.47391 * 186.13339 * 10 8 7 35 35 H 1.09002 * 109.47301 * 66.13108 * 10 8 7 36 36 H 1.09000 * 109.47126 * 84.82548 * 14 13 11 37 37 H 1.08997 * 109.47350 * 204.82954 * 14 13 11 38 38 H 1.09000 * 109.46993 * 324.82627 * 14 13 11 39 39 H 1.09010 * 109.47408 * 209.99391 * 15 13 11 40 40 H 1.09000 * 109.47111 * 329.99601 * 15 13 11 41 41 H 0.97005 * 119.99984 * 179.97438 * 19 18 16 42 42 H 1.07996 * 125.90056 * 179.72572 * 24 3 2 43 43 H 1.08997 * 109.47095 * 90.00206 * 27 26 2 44 44 H 1.09004 * 109.46526 * 209.99318 * 27 26 2 45 45 H 1.08995 * 109.47049 * 329.99232 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 1.8433 2.5276 0.0005 5 6 1.5721 2.9675 1.4162 6 8 1.7372 2.1954 2.3308 7 8 1.1482 4.2173 1.6611 8 6 0.9077 4.5719 3.0485 9 1 1.5753 3.9979 3.6911 10 6 -0.5449 4.2568 3.4110 11 6 1.1660 6.0438 3.2428 12 8 1.2312 6.7801 2.2813 13 7 1.3247 6.5419 4.4850 14 6 1.3635 5.6379 5.6373 15 6 1.4582 7.9872 4.6832 16 6 0.0941 8.5946 4.8864 17 1 -0.7845 7.9666 4.8700 18 6 -0.0324 9.9519 5.0932 19 7 -1.2229 10.4820 5.2700 20 14 1.4873 11.0379 5.1222 21 1 1.7736 11.5252 3.7490 22 1 1.2503 12.1971 6.0195 23 1 2.6460 10.2545 5.6211 24 6 3.6335 0.6560 -0.0065 25 7 3.6333 -0.6524 -0.0006 26 7 2.3027 -1.0900 -0.0005 27 6 1.8538 -2.4846 -0.0004 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8901 0.5137 31 1 0.9304 2.6157 -0.5885 32 1 2.6185 3.1588 -0.4339 33 1 -1.2110 4.7449 2.6995 34 1 -0.7561 4.6220 4.4159 35 1 -0.7026 3.1788 3.3756 36 1 2.3776 5.2606 5.7690 37 1 1.0575 6.1779 6.5332 38 1 0.6844 4.8026 5.4668 39 1 2.0754 8.1781 5.5612 40 1 1.9271 8.4324 3.8057 41 1 -1.3118 11.4369 5.4159 42 1 4.5083 1.2891 -0.0123 43 1 1.7421 -2.8303 -1.0280 44 1 2.5901 -3.1031 0.5129 45 1 0.8957 -2.5578 0.5140 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795859404.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:47 Heat of formation + Delta-G solvation = -60.501684 kcal Electronic energy + Delta-G solvation = -27381.652348 eV Core-core repulsion = 23400.801205 eV Total energy + Delta-G solvation = -3980.851143 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.42906 -41.70254 -40.47651 -37.61195 -36.70992 -34.82277 -34.68913 -33.96709 -33.08646 -30.73305 -30.20116 -27.64001 -27.59587 -26.94585 -25.81727 -24.11365 -22.38617 -21.65027 -20.40493 -20.22171 -19.14658 -18.94944 -18.16783 -17.43166 -17.39161 -17.21637 -16.71918 -16.39048 -16.29145 -15.78368 -15.26838 -14.99007 -14.80926 -14.74974 -14.34241 -14.10040 -13.99374 -13.84834 -13.73254 -13.59555 -13.42048 -13.38767 -13.22512 -13.17585 -13.03104 -12.85418 -12.67295 -12.58197 -12.44600 -12.03460 -11.87915 -11.73589 -11.58645 -11.53885 -10.82315 -10.66323 -10.20384 -9.49685 -9.34290 -8.33117 -6.38489 0.83944 1.18750 1.28416 1.35235 1.38691 1.46653 1.56160 1.65558 1.86158 2.31989 2.46261 3.01079 3.39361 3.55835 3.69816 3.75854 3.84915 3.90114 4.08232 4.19268 4.27363 4.34952 4.39100 4.42739 4.56098 4.58966 4.61943 4.64210 4.71787 4.72925 4.77298 4.85960 4.92194 4.93507 5.04339 5.08361 5.18610 5.38987 5.43844 5.53833 5.66744 6.11875 6.22394 6.49914 6.62843 6.70835 6.76097 7.15212 7.29098 8.83251 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.030732 B = 0.002398 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.886416 B =11671.865040 C =11855.018975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.105 3.895 3 C -0.254 4.254 4 C -0.023 4.023 5 C 0.460 3.540 6 O -0.525 6.525 7 O -0.344 6.344 8 C 0.082 3.918 9 H 0.119 0.881 10 C -0.158 4.158 11 C 0.503 3.497 12 O -0.573 6.573 13 N -0.599 5.599 14 C 0.066 3.934 15 C 0.222 3.778 16 C -0.537 4.537 17 H 0.034 0.966 18 C 0.013 3.987 19 N -0.942 5.942 20 Si 0.945 3.055 21 H -0.277 1.277 22 H -0.275 1.275 23 H -0.238 1.238 24 C 0.054 3.946 25 N -0.336 5.336 26 N -0.379 5.379 27 C 0.090 3.910 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.021 0.979 41 H 0.269 0.731 42 H 0.197 0.803 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.059 -26.259 -9.208 28.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.024 4.024 3 C -0.266 4.266 4 C -0.061 4.061 5 C 0.304 3.696 6 O -0.413 6.413 7 O -0.261 6.261 8 C 0.024 3.976 9 H 0.136 0.864 10 C -0.215 4.215 11 C 0.290 3.710 12 O -0.452 6.452 13 N -0.331 5.331 14 C -0.076 4.076 15 C 0.100 3.900 16 C -0.576 4.576 17 H 0.053 0.947 18 C -0.185 4.185 19 N -0.582 5.582 20 Si 0.768 3.232 21 H -0.202 1.202 22 H -0.200 1.200 23 H -0.161 1.161 24 C -0.131 4.131 25 N -0.157 5.157 26 N -0.161 5.161 27 C -0.049 4.049 28 H 0.123 0.877 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.074 0.926 40 H 0.039 0.961 41 H 0.078 0.922 42 H 0.213 0.787 43 H 0.109 0.891 44 H 0.107 0.893 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.736 -27.182 -9.336 29.307 hybrid contribution -0.165 1.664 0.340 1.706 sum 5.571 -25.518 -8.995 27.625 Atomic orbital electron populations 1.20629 0.85009 1.04726 1.04917 1.21339 0.95890 0.86798 0.98408 1.19305 0.92849 0.94115 1.20314 1.19621 1.06148 0.92163 0.88166 1.24667 0.72001 0.78755 0.94202 1.90624 1.49126 1.53944 1.47623 1.86663 1.77289 1.32958 1.29148 1.22433 1.00996 0.91933 0.82280 0.86357 1.22135 0.91936 1.03970 1.03469 1.20661 0.76964 0.90121 0.83237 1.90647 1.51763 1.61726 1.41106 1.47830 1.70378 1.08441 1.06444 1.22173 1.03123 0.93831 0.88433 1.19447 0.95923 0.77559 0.97045 1.21523 0.92932 0.93582 1.49519 0.94731 1.25808 0.99410 0.99380 0.93935 1.70037 1.24864 1.12985 1.50307 0.85756 0.80103 0.78779 0.78583 1.20220 1.20033 1.16137 1.24084 0.98434 0.92170 0.98388 1.77296 0.98146 1.13467 1.26745 1.48709 1.03386 1.07370 1.56606 1.22183 1.02092 0.75905 1.04766 0.87655 0.89243 0.90211 0.84778 0.85139 0.91837 0.89297 0.88671 0.90239 0.90049 0.89604 0.92630 0.96066 0.92234 0.78664 0.89059 0.89255 0.87234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 9.80 71.24 0.70 -0.27 16 2 C 0.10 1.85 6.93 41.41 0.29 2.13 16 3 C -0.25 -5.08 4.59 -20.14 -0.09 -5.17 16 4 C -0.02 -0.41 5.85 29.10 0.17 -0.24 16 5 C 0.46 11.76 7.92 71.24 0.56 12.33 16 6 O -0.52 -15.42 15.25 21.95 0.33 -15.08 16 7 O -0.34 -10.76 9.47 -45.13 -0.43 -11.18 16 8 C 0.08 2.61 2.14 29.85 0.06 2.67 16 9 H 0.12 3.35 6.31 -2.39 -0.02 3.34 16 10 C -0.16 -4.30 9.19 71.98 0.66 -3.64 16 11 C 0.50 21.17 6.95 87.66 0.61 21.77 16 12 O -0.57 -29.56 16.13 15.24 0.25 -29.32 16 13 N -0.60 -24.44 2.86 -851.13 -2.43 -26.87 16 14 C 0.07 1.90 9.79 127.77 1.25 3.15 16 15 C 0.22 10.75 4.25 85.64 0.36 11.11 16 16 C -0.54 -31.06 9.94 25.60 0.25 -30.81 16 17 H 0.03 2.21 8.06 -2.91 -0.02 2.19 16 18 C 0.01 0.76 5.47 84.65 0.46 1.23 16 19 N -0.94 -58.75 13.96 21.45 0.30 -58.45 16 20 Si 0.94 43.98 27.47 68.60 1.88 45.86 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 23 H -0.24 -9.95 6.54 99.48 0.65 -9.29 16 24 C 0.05 1.18 11.96 85.23 1.02 2.20 16 25 N -0.34 -8.00 12.58 -57.03 -0.72 -8.71 16 26 N -0.38 -7.05 4.01 -356.02 -1.43 -8.47 16 27 C 0.09 0.83 11.27 127.77 1.44 2.27 16 28 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.09 0.61 7.08 -2.39 -0.02 0.59 16 30 H 0.08 0.94 7.89 -2.38 -0.02 0.92 16 31 H 0.13 1.73 8.01 -2.39 -0.02 1.71 16 32 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 34 H 0.09 2.37 6.33 -2.39 -0.02 2.35 16 35 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.08 2.37 8.03 -2.39 -0.02 2.35 16 38 H 0.09 2.06 4.92 -2.39 -0.01 2.05 16 39 H 0.06 2.44 7.13 -2.38 -0.02 2.42 16 40 H 0.02 1.11 6.78 -2.39 -0.02 1.09 16 41 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 42 H 0.20 3.28 8.06 -2.91 -0.02 3.25 16 43 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.11 0.47 7.05 -2.39 -0.02 0.45 16 Total: -1.00 -85.99 379.49 6.46 -79.53 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.95 Total: 13.97 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: 7.75 Total: 18.73 kcal Atomic # 7 Polarization: -98.23 SS G_CDS: -4.28 Total: -102.51 kcal Atomic # 8 Polarization: -55.74 SS G_CDS: 0.15 Total: -55.58 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.88 Total: 45.86 kcal Total: -85.99 6.46 -79.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795859404.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.028 kcal (2) G-P(sol) polarization free energy of solvation -85.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds