Wall clock time and date at job start Tue Mar 31 2020 13:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47079 * 2 1 4 4 C 1.46503 * 119.99701 * 269.99737 * 3 2 1 5 5 C 1.50699 * 109.47142 * 269.99977 * 4 3 2 6 6 H 1.07994 * 120.00013 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99700 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99800 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00292 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.46851 * 89.99955 * 9 7 5 11 11 H 1.48489 * 109.47467 * 210.00022 * 9 7 5 12 12 H 1.48500 * 109.46849 * 330.00512 * 9 7 5 13 13 C 1.34764 * 120.00171 * 89.99990 * 3 2 1 14 14 O 1.21283 * 120.00377 * 179.97438 * 13 3 2 15 15 C 1.50707 * 120.00318 * 0.02562 * 13 3 2 16 16 O 1.45196 * 109.47486 * 180.02562 * 15 13 3 17 17 C 1.34768 * 116.99741 * 180.02562 * 16 15 13 18 18 O 1.21536 * 120.00486 * 359.97438 * 17 16 15 19 19 C 1.47236 * 119.99740 * 179.97438 * 17 16 15 20 20 C 1.47058 * 127.20148 * 359.97430 * 19 17 16 21 21 C 1.34160 * 105.95000 * 179.97438 * 20 19 17 22 22 O 1.34217 * 109.14291 * 0.24586 * 21 20 19 23 23 C 1.33630 * 110.92467 * 359.58202 * 22 21 20 24 24 C 1.50696 * 125.80666 * 180.13728 * 23 22 21 25 25 C 1.53005 * 109.47040 * 300.32588 * 24 23 22 26 26 C 1.52994 * 109.47647 * 60.32529 * 24 23 22 27 27 H 1.09000 * 109.46987 * 60.00003 * 1 2 3 28 28 H 1.09000 * 109.47297 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46982 * 300.00511 * 1 2 3 30 30 H 1.08998 * 109.47264 * 239.99822 * 2 1 3 31 31 H 1.09000 * 109.46987 * 119.99997 * 2 1 3 32 32 H 1.09008 * 109.47210 * 30.00481 * 4 3 2 33 33 H 1.09005 * 109.46903 * 150.00047 * 4 3 2 34 34 H 0.97006 * 120.00154 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.47109 * 59.99071 * 15 13 3 36 36 H 1.09005 * 109.46755 * 300.00131 * 15 13 3 37 37 H 1.08000 * 127.02775 * 359.95948 * 20 19 17 38 38 H 1.08002 * 125.42521 * 179.97438 * 21 20 19 39 39 H 1.09001 * 109.47051 * 180.32741 * 24 23 22 40 40 H 1.08992 * 109.47208 * 60.00408 * 25 24 23 41 41 H 1.09001 * 109.46999 * 180.02562 * 25 24 23 42 42 H 1.09004 * 109.46779 * 299.99805 * 25 24 23 43 43 H 1.09000 * 109.47789 * 179.97438 * 26 24 23 44 44 H 1.09001 * 109.47068 * 300.00201 * 26 24 23 45 45 H 1.08999 * 109.47216 * 59.99727 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1494 2.3904 -2.8775 8 7 5.3914 2.1834 -3.2574 9 14 3.0131 3.4359 -3.9289 10 1 3.1157 4.8561 -3.5070 11 1 3.4067 3.3136 -5.3554 12 1 1.6135 2.9692 -3.7597 13 6 2.2430 2.0166 1.1671 14 8 2.6477 3.1599 1.1671 15 6 1.9924 1.3061 2.4723 16 8 2.3062 2.1959 3.5759 17 6 2.1354 1.7099 4.8212 18 8 1.7346 0.5736 4.9805 19 6 2.4342 2.5556 5.9889 20 6 2.9239 3.9422 5.9804 21 6 3.0489 4.2969 7.2682 22 8 2.6896 3.2638 8.0461 23 6 2.3142 2.2167 7.3056 24 6 1.8449 0.8859 7.8344 25 6 2.9481 0.2590 8.6893 26 6 0.5917 1.0895 8.6882 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0285 33 1 2.0956 3.1411 -1.1385 34 1 5.7177 2.5744 -4.0830 35 1 2.6228 0.4188 2.5298 36 1 0.9445 1.0115 2.5302 37 1 3.1393 4.5506 5.1145 38 1 3.3889 5.2589 7.6225 39 1 1.6122 0.2249 6.9995 40 1 3.1807 0.9199 9.5241 41 1 2.6087 -0.7038 9.0714 42 1 3.8409 0.1138 8.0809 43 1 0.2520 0.1269 9.0703 44 1 0.8244 1.7506 9.5230 45 1 -0.1942 1.5362 8.0792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796398844.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:07 Heat of formation + Delta-G solvation = -108.674696 kcal Electronic energy + Delta-G solvation = -27336.741560 eV Core-core repulsion = 23321.508727 eV Total energy + Delta-G solvation = -4015.232833 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.89639 -40.33534 -39.00690 -36.57690 -35.67266 -35.38480 -33.19234 -32.76066 -30.47366 -29.64950 -29.17090 -27.52742 -27.09990 -24.40146 -23.05484 -22.79924 -22.26617 -21.08945 -19.82471 -18.63139 -18.17812 -17.05116 -16.95177 -16.70944 -16.43459 -16.17990 -15.81525 -15.36146 -15.02188 -14.64710 -14.57880 -13.99008 -13.58882 -13.54750 -13.46433 -13.32313 -12.94963 -12.85687 -12.54963 -12.52734 -12.39850 -12.20804 -11.84914 -11.68094 -11.59445 -11.47641 -11.40031 -11.03085 -10.90114 -10.58606 -10.53472 -10.46104 -10.18443 -10.07745 -9.57146 -9.11856 -8.90222 -8.60848 -7.83103 -6.10514 -4.09849 0.95166 1.80841 2.29470 2.65173 2.92986 3.16854 3.28064 3.33910 3.35880 3.77889 4.10350 4.37800 4.46297 4.60877 4.72073 4.72740 4.78898 5.03036 5.06886 5.16609 5.22671 5.24417 5.27105 5.31410 5.41506 5.44932 5.49257 5.56546 5.57897 5.65495 5.73927 5.85874 5.88673 5.93355 6.09672 6.11285 6.33285 6.35344 6.65007 6.76325 6.88879 7.24006 7.57260 7.69534 8.10422 8.43353 8.81224 8.93223 9.49014 11.02792 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.019919 B = 0.002702 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.334018 B =10359.289228 C =11086.978074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.588 5.588 4 C 0.218 3.782 5 C -0.531 4.531 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.510 3.490 14 O -0.518 6.518 15 C 0.052 3.948 16 O -0.320 6.320 17 C 0.542 3.458 18 O -0.515 6.515 19 C -0.230 4.230 20 C -0.161 4.161 21 C -0.048 4.048 22 O -0.168 6.168 23 C 0.098 3.902 24 C -0.038 4.038 25 C -0.147 4.147 26 C -0.146 4.146 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.033 0.967 33 H 0.038 0.962 34 H 0.265 0.735 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.168 0.832 38 H 0.212 0.788 39 H 0.130 0.870 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.041 -3.082 22.935 25.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.321 5.321 4 C 0.098 3.902 5 C -0.570 4.570 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.295 3.705 14 O -0.393 6.393 15 C -0.026 4.026 16 O -0.235 6.235 17 C 0.389 3.611 18 O -0.406 6.406 19 C -0.232 4.232 20 C -0.180 4.180 21 C -0.113 4.113 22 O -0.064 6.064 23 C 0.045 3.955 24 C -0.056 4.056 25 C -0.204 4.204 26 C -0.203 4.203 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.185 0.815 38 H 0.228 0.772 39 H 0.148 0.852 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.791 -2.728 23.073 25.213 hybrid contribution -0.344 0.555 -1.051 1.237 sum -10.134 -2.173 22.022 24.339 Atomic orbital electron populations 1.22247 0.96486 1.01886 1.02325 1.21546 0.93655 0.83554 1.03519 1.47865 1.64251 1.13556 1.06438 1.19704 0.97524 0.93437 0.79527 1.21318 0.95271 1.33099 1.07263 0.90681 1.24853 0.95013 0.95768 0.97323 1.69896 1.15134 1.44852 1.23579 0.86850 0.81430 0.81633 0.79775 1.19856 1.21034 1.19037 1.19706 0.79414 0.87116 0.84296 1.90715 1.44224 1.17611 1.86742 1.22941 1.02832 0.92666 0.84117 1.86629 1.78609 1.44356 1.13857 1.19960 0.73774 0.84658 0.82744 1.90760 1.44165 1.19212 1.86498 1.20168 1.15603 0.96544 0.90907 1.23059 1.02584 0.94102 0.98262 1.23941 1.05765 0.92271 0.89313 1.83759 1.64613 1.20034 1.38010 1.22827 0.95273 0.89332 0.88048 1.20384 0.96104 0.87941 1.01198 1.21853 0.97937 1.01024 0.99578 1.21848 0.96225 1.02692 0.99571 0.91980 0.91664 0.93024 0.89164 0.91348 0.94869 0.94422 0.92509 0.88359 0.88580 0.81490 0.77175 0.85209 0.92073 0.91163 0.92037 0.91171 0.92079 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 10.24 37.16 0.38 -1.74 16 2 C 0.10 1.54 5.93 -4.04 -0.02 1.52 16 3 N -0.59 -11.98 2.46 -175.05 -0.43 -12.41 16 4 C 0.22 5.28 4.23 -5.19 -0.02 5.25 16 5 C -0.53 -15.18 9.94 -34.44 -0.34 -15.52 16 6 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 9 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 10 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 13 C 0.51 10.65 7.75 -10.99 -0.09 10.57 16 14 O -0.52 -13.11 16.08 -14.11 -0.23 -13.34 16 15 C 0.05 0.85 4.51 36.01 0.16 1.01 16 16 O -0.32 -5.58 9.67 -47.36 -0.46 -6.04 16 17 C 0.54 8.38 7.95 34.39 0.27 8.66 16 18 O -0.51 -8.01 14.30 -19.29 -0.28 -8.28 16 19 C -0.23 -3.10 6.32 -103.29 -0.65 -3.75 16 20 C -0.16 -1.89 11.05 -37.44 -0.41 -2.31 16 21 C -0.05 -0.43 12.03 29.30 0.35 -0.08 16 22 O -0.17 -1.73 10.52 7.70 0.08 -1.65 16 23 C 0.10 1.12 5.88 -34.94 -0.21 0.91 16 24 C -0.04 -0.36 3.25 -91.77 -0.30 -0.66 16 25 C -0.15 -1.13 9.18 37.16 0.34 -0.79 16 26 C -0.15 -1.09 9.17 37.15 0.34 -0.75 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.61 7.22 -51.93 -0.38 0.24 16 30 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 31 H 0.07 0.89 6.44 -51.93 -0.33 0.55 16 32 H 0.03 0.76 7.13 -51.92 -0.37 0.39 16 33 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.10 1.46 7.40 -51.93 -0.38 1.08 16 36 H 0.10 1.33 7.18 -51.93 -0.37 0.96 16 37 H 0.17 1.94 8.06 -52.49 -0.42 1.51 16 38 H 0.21 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.13 1.42 5.53 -51.93 -0.29 1.13 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 381.54 15.07 5.75 5.75 Total: -1.00 -35.62 381.54 -6.46 -42.08 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -6.72 Total: -0.40 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -0.29 Total: 4.35 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.34 Total: -39.23 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.88 Total: -29.31 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.62 -6.46 -42.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796398844.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.596 kcal (2) G-P(sol) polarization free energy of solvation -35.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds