Wall clock time and date at job start Tue Mar 31 2020 13:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47079 * 2 1 4 4 C 1.46503 * 119.99701 * 269.99737 * 3 2 1 5 5 C 1.50699 * 109.47142 * 269.99977 * 4 3 2 6 6 H 1.07994 * 120.00013 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99700 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99800 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00292 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.46851 * 89.99955 * 9 7 5 11 11 H 1.48489 * 109.47467 * 210.00022 * 9 7 5 12 12 H 1.48500 * 109.46849 * 330.00512 * 9 7 5 13 13 C 1.34764 * 120.00171 * 89.99990 * 3 2 1 14 14 O 1.21283 * 120.00377 * 179.97438 * 13 3 2 15 15 C 1.50707 * 120.00318 * 0.02562 * 13 3 2 16 16 O 1.45196 * 109.47486 * 180.02562 * 15 13 3 17 17 C 1.34768 * 116.99741 * 180.02562 * 16 15 13 18 18 O 1.21536 * 120.00486 * 359.97438 * 17 16 15 19 19 C 1.47236 * 119.99740 * 179.97438 * 17 16 15 20 20 C 1.47058 * 127.20148 * 359.97430 * 19 17 16 21 21 C 1.34160 * 105.95000 * 179.97438 * 20 19 17 22 22 O 1.34217 * 109.14291 * 0.24586 * 21 20 19 23 23 C 1.33630 * 110.92467 * 359.58202 * 22 21 20 24 24 C 1.50696 * 125.80666 * 180.13728 * 23 22 21 25 25 C 1.53005 * 109.47040 * 300.32588 * 24 23 22 26 26 C 1.52994 * 109.47647 * 60.32529 * 24 23 22 27 27 H 1.09000 * 109.46987 * 60.00003 * 1 2 3 28 28 H 1.09000 * 109.47297 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46982 * 300.00511 * 1 2 3 30 30 H 1.08998 * 109.47264 * 239.99822 * 2 1 3 31 31 H 1.09000 * 109.46987 * 119.99997 * 2 1 3 32 32 H 1.09008 * 109.47210 * 30.00481 * 4 3 2 33 33 H 1.09005 * 109.46903 * 150.00047 * 4 3 2 34 34 H 0.97006 * 120.00154 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.47109 * 59.99071 * 15 13 3 36 36 H 1.09005 * 109.46755 * 300.00131 * 15 13 3 37 37 H 1.08000 * 127.02775 * 359.95948 * 20 19 17 38 38 H 1.08002 * 125.42521 * 179.97438 * 21 20 19 39 39 H 1.09001 * 109.47051 * 180.32741 * 24 23 22 40 40 H 1.08992 * 109.47208 * 60.00408 * 25 24 23 41 41 H 1.09001 * 109.46999 * 180.02562 * 25 24 23 42 42 H 1.09004 * 109.46779 * 299.99805 * 25 24 23 43 43 H 1.09000 * 109.47789 * 179.97438 * 26 24 23 44 44 H 1.09001 * 109.47068 * 300.00201 * 26 24 23 45 45 H 1.08999 * 109.47216 * 59.99727 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1494 2.3904 -2.8775 8 7 5.3914 2.1834 -3.2574 9 14 3.0131 3.4359 -3.9289 10 1 3.1157 4.8561 -3.5070 11 1 3.4067 3.3136 -5.3554 12 1 1.6135 2.9692 -3.7597 13 6 2.2430 2.0166 1.1671 14 8 2.6477 3.1599 1.1671 15 6 1.9924 1.3061 2.4723 16 8 2.3062 2.1959 3.5759 17 6 2.1354 1.7099 4.8212 18 8 1.7346 0.5736 4.9805 19 6 2.4342 2.5556 5.9889 20 6 2.9239 3.9422 5.9804 21 6 3.0489 4.2969 7.2682 22 8 2.6896 3.2638 8.0461 23 6 2.3142 2.2167 7.3056 24 6 1.8449 0.8859 7.8344 25 6 2.9481 0.2590 8.6893 26 6 0.5917 1.0895 8.6882 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0285 33 1 2.0956 3.1411 -1.1385 34 1 5.7177 2.5744 -4.0830 35 1 2.6228 0.4188 2.5298 36 1 0.9445 1.0115 2.5302 37 1 3.1393 4.5506 5.1145 38 1 3.3889 5.2589 7.6225 39 1 1.6122 0.2249 6.9995 40 1 3.1807 0.9199 9.5241 41 1 2.6087 -0.7038 9.0714 42 1 3.8409 0.1138 8.0809 43 1 0.2520 0.1269 9.0703 44 1 0.8244 1.7506 9.5230 45 1 -0.1942 1.5362 8.0792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796398844.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:06 Heat of formation + Delta-G solvation = -130.404958 kcal Electronic energy + Delta-G solvation = -27337.683855 eV Core-core repulsion = 23321.508727 eV Total energy + Delta-G solvation = -4016.175128 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.74742 -41.63681 -40.55954 -37.77771 -37.06031 -36.40876 -34.89955 -34.07955 -32.07420 -30.87488 -30.22747 -28.81359 -28.10521 -25.57494 -24.47023 -23.96733 -23.55103 -22.08971 -20.81231 -20.14050 -19.24622 -19.13898 -18.17963 -17.93137 -17.79779 -17.21189 -17.15837 -16.60792 -16.31122 -15.87615 -15.71584 -15.38440 -14.89810 -14.79166 -14.54262 -14.30519 -14.17289 -14.05490 -13.83569 -13.76364 -13.62389 -13.42091 -13.18703 -13.07249 -12.58492 -12.44190 -12.38935 -12.22809 -12.22134 -12.16478 -12.03460 -11.82062 -11.75749 -11.46461 -11.00892 -10.85072 -10.82414 -9.72713 -9.55606 -8.35284 -6.41133 -0.03108 0.96102 1.11842 1.32910 1.36972 1.45194 1.53551 1.76532 1.86794 2.30093 2.33184 2.98891 3.35135 3.36014 3.53966 3.71815 3.87743 3.92479 3.94795 4.07865 4.12193 4.29696 4.35111 4.45740 4.57114 4.63294 4.74629 4.74915 4.81479 4.83738 4.87069 4.88530 4.94287 4.98068 5.05416 5.15409 5.24106 5.28172 5.35038 5.36749 5.43279 5.54439 5.91447 6.19825 6.44831 6.56342 6.60438 7.12731 7.26486 8.81703 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.019919 B = 0.002702 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.334018 B =10359.289228 C =11086.978074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.092 3.908 3 N -0.591 5.591 4 C 0.226 3.774 5 C -0.539 4.539 6 H 0.029 0.971 7 C 0.012 3.988 8 N -0.945 5.945 9 Si 0.948 3.052 10 H -0.276 1.276 11 H -0.274 1.274 12 H -0.235 1.235 13 C 0.502 3.498 14 O -0.574 6.574 15 C 0.062 3.938 16 O -0.343 6.343 17 C 0.540 3.460 18 O -0.521 6.521 19 C -0.266 4.266 20 C -0.195 4.195 21 C -0.021 4.021 22 O -0.164 6.164 23 C 0.108 3.892 24 C -0.042 4.042 25 C -0.143 4.143 26 C -0.142 4.142 27 H 0.053 0.947 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.021 0.979 34 H 0.269 0.731 35 H 0.115 0.885 36 H 0.128 0.872 37 H 0.159 0.841 38 H 0.256 0.744 39 H 0.113 0.887 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.048 0.952 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.345 -3.497 24.623 27.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.030 4.030 3 N -0.324 5.324 4 C 0.104 3.896 5 C -0.578 4.578 6 H 0.047 0.953 7 C -0.187 4.187 8 N -0.585 5.585 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.199 1.199 12 H -0.158 1.158 13 C 0.289 3.711 14 O -0.454 6.454 15 C -0.015 4.015 16 O -0.259 6.259 17 C 0.388 3.612 18 O -0.413 6.413 19 C -0.269 4.269 20 C -0.213 4.213 21 C -0.085 4.085 22 O -0.059 6.059 23 C 0.054 3.946 24 C -0.060 4.060 25 C -0.200 4.200 26 C -0.199 4.199 27 H 0.072 0.928 28 H 0.116 0.884 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.132 0.868 36 H 0.146 0.854 37 H 0.177 0.823 38 H 0.272 0.728 39 H 0.131 0.869 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.068 0.932 43 H 0.107 0.893 44 H 0.088 0.912 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.129 -3.206 24.783 27.777 hybrid contribution 0.465 0.632 -1.475 1.670 sum -11.664 -2.574 23.308 26.190 Atomic orbital electron populations 1.22182 0.93596 1.03995 1.02266 1.21912 0.95962 0.80674 1.04465 1.47963 1.63818 1.15370 1.05202 1.19392 0.95122 0.93160 0.81885 1.21546 0.97023 1.32343 1.06872 0.95292 1.25859 0.96749 0.97133 0.98920 1.70050 1.17468 1.46446 1.24523 0.85714 0.80540 0.78957 0.77749 1.20215 1.19948 1.15823 1.20486 0.78117 0.86664 0.85828 1.90675 1.46812 1.20187 1.87724 1.22858 1.04960 0.91902 0.81742 1.86623 1.79230 1.45226 1.14790 1.20269 0.73531 0.84957 0.82441 1.90740 1.44693 1.19398 1.86436 1.20329 1.17912 0.97541 0.91071 1.23124 1.04864 0.93868 0.99489 1.24692 1.02816 0.92855 0.88156 1.83804 1.64226 1.20037 1.37846 1.23168 0.93887 0.90081 0.87415 1.20473 0.97587 0.86685 1.01221 1.21850 0.96822 1.02076 0.99268 1.21839 0.94859 1.03927 0.99247 0.92815 0.88414 0.92329 0.89890 0.88878 0.92487 0.96116 0.92200 0.86751 0.85449 0.82308 0.72824 0.86907 0.91165 0.89285 0.93247 0.89316 0.91202 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 10.24 71.98 0.74 -2.81 16 2 C 0.09 2.66 5.93 86.38 0.51 3.17 16 3 N -0.59 -24.14 2.46 -826.12 -2.03 -26.17 16 4 C 0.23 11.00 4.23 85.63 0.36 11.36 16 5 C -0.54 -31.89 9.94 25.60 0.25 -31.63 16 6 H 0.03 1.92 8.06 -2.91 -0.02 1.89 16 7 C 0.01 0.68 5.47 84.66 0.46 1.15 16 8 N -0.94 -60.06 13.96 21.45 0.30 -59.76 16 9 Si 0.95 44.34 27.47 68.60 1.88 46.23 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.24 -9.77 6.54 99.48 0.65 -9.11 16 13 C 0.50 21.36 7.75 87.66 0.68 22.04 16 14 O -0.57 -30.38 16.08 15.76 0.25 -30.13 16 15 C 0.06 2.01 4.51 71.24 0.32 2.33 16 16 O -0.34 -12.24 9.67 -50.40 -0.49 -12.73 16 17 C 0.54 16.91 7.95 70.19 0.56 17.47 16 18 O -0.52 -16.02 14.30 19.72 0.28 -15.74 16 19 C -0.27 -7.22 6.32 -19.00 -0.12 -7.34 16 20 C -0.19 -4.58 11.05 23.65 0.26 -4.32 16 21 C -0.02 -0.33 12.03 66.89 0.80 0.47 16 22 O -0.16 -3.04 10.52 4.65 0.05 -2.99 16 23 C 0.11 2.36 5.88 25.28 0.15 2.50 16 24 C -0.04 -0.73 3.25 -11.54 -0.04 -0.76 16 25 C -0.14 -1.94 9.18 71.98 0.66 -1.28 16 26 C -0.14 -1.82 9.17 71.98 0.66 -1.16 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 28 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 1.21 7.22 -2.38 -0.02 1.19 16 30 H 0.08 2.53 8.07 -2.39 -0.02 2.51 16 31 H 0.09 2.23 6.44 -2.39 -0.02 2.21 16 32 H 0.06 2.50 7.13 -2.38 -0.02 2.49 16 33 H 0.02 1.08 6.85 -2.38 -0.02 1.07 16 34 H 0.27 15.85 8.31 -92.70 -0.77 15.08 16 35 H 0.11 3.31 7.40 -2.39 -0.02 3.29 16 36 H 0.13 3.29 7.18 -2.38 -0.02 3.27 16 37 H 0.16 3.90 8.06 -2.91 -0.02 3.88 16 38 H 0.26 1.58 8.06 -2.91 -0.02 1.55 16 39 H 0.11 2.39 5.53 -2.39 -0.01 2.38 16 40 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.05 0.78 8.14 -2.38 -0.02 0.77 16 43 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -82.29 381.54 7.45 -74.84 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.94 Total: 15.26 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 6.27 Total: 11.19 kcal Atomic # 7 Polarization: -84.20 SS G_CDS: -1.73 Total: -85.93 kcal Atomic # 8 Polarization: -61.68 SS G_CDS: 0.10 Total: -61.59 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.23 kcal Total: -82.29 7.45 -74.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796398844.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.564 kcal (2) G-P(sol) polarization free energy of solvation -82.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds