Wall clock time and date at job start Tue Mar 31 2020 14:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86799 * 119.99948 * 2 1 4 4 H 1.48499 * 109.47295 * 272.94573 * 3 2 1 5 5 H 1.48500 * 109.47161 * 32.94602 * 3 2 1 6 6 H 1.48496 * 109.47265 * 152.94217 * 3 2 1 7 7 C 1.38810 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00123 * 339.34696 * 7 2 1 9 9 N 1.36938 * 119.99884 * 159.34491 * 7 2 1 10 10 C 1.46924 * 120.63090 * 332.62490 * 9 7 2 11 11 C 1.53191 * 108.77954 * 233.58963 * 10 9 7 12 12 C 1.53042 * 109.31330 * 305.36889 * 11 10 9 13 13 N 1.46494 * 109.46257 * 181.38283 * 12 11 10 14 14 C 1.34774 * 120.00363 * 154.97201 * 13 12 11 15 15 O 1.21591 * 119.99825 * 0.02562 * 14 13 12 16 16 N 1.34778 * 120.00553 * 180.02562 * 14 13 12 17 17 N 1.40099 * 119.99759 * 359.97438 * 16 14 13 18 18 C 1.39150 * 120.00136 * 179.97438 * 17 16 14 19 19 N 1.32363 * 119.71574 * 0.02562 * 18 17 16 20 20 C 1.31980 * 121.64763 * 179.97438 * 19 18 17 21 21 C 1.38033 * 120.89667 * 0.02562 * 20 19 18 22 22 C 1.38861 * 119.34568 * 0.25351 * 21 20 19 23 23 C 1.38480 * 118.48291 * 359.47957 * 22 21 20 24 24 F 1.35096 * 120.47196 * 180.24402 * 23 22 21 25 25 C 1.53040 * 109.52923 * 61.36665 * 12 11 10 26 26 C 1.46928 * 120.63286 * 152.61096 * 9 7 2 27 27 H 0.97001 * 120.00921 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.58592 * 113.80480 * 10 9 7 29 29 H 1.09002 * 109.70555 * 353.44995 * 10 9 7 30 30 H 1.08996 * 109.50178 * 185.41387 * 11 10 9 31 31 H 1.08999 * 109.52169 * 65.33326 * 11 10 9 32 32 H 1.09001 * 109.45971 * 301.35893 * 12 11 10 33 33 H 0.97000 * 120.00051 * 334.97339 * 13 12 11 34 34 H 0.96996 * 120.00327 * 179.97438 * 16 14 13 35 35 H 0.97002 * 120.00358 * 0.02562 * 17 16 14 36 36 H 1.08000 * 119.55004 * 180.02562 * 20 19 18 37 37 H 1.08001 * 120.32255 * 179.97438 * 21 20 19 38 38 H 1.07995 * 120.75331 * 179.74695 * 22 21 20 39 39 H 1.09008 * 109.49341 * 58.58188 * 25 12 11 40 40 H 1.08997 * 109.50035 * 178.67914 * 25 12 11 41 41 H 1.08997 * 109.58525 * 246.20357 * 26 9 7 42 42 H 1.09008 * 109.58407 * 6.48044 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4353 2.0824 -1.3982 5 1 1.4801 2.6339 0.7614 6 1 3.5773 1.4231 0.6369 7 6 2.0102 -1.2021 -0.0005 8 1 1.5223 -2.1075 0.3289 9 7 3.3136 -1.2400 -0.4189 10 6 3.8172 -0.2582 -1.3891 11 6 4.4621 -1.0075 -2.5593 12 6 5.5289 -1.9640 -2.0216 13 7 6.1707 -2.6582 -3.1406 14 6 7.4213 -3.1421 -3.0054 15 8 8.0167 -3.0028 -1.9545 16 7 8.0120 -3.7803 -4.0351 17 7 7.3258 -3.9413 -5.2458 18 6 7.9358 -4.5998 -6.3091 19 7 9.1644 -5.0723 -6.1703 20 6 9.7789 -5.7032 -7.1533 21 6 9.1575 -5.8938 -8.3710 22 6 7.8703 -5.4089 -8.5615 23 6 7.2482 -4.7561 -7.5106 24 9 5.9945 -4.2726 -7.6502 25 6 4.8750 -2.9897 -1.0929 26 6 4.2351 -2.2629 0.0941 27 1 -0.4851 0.8400 -0.0004 28 1 4.5596 0.3805 -0.9107 29 1 2.9921 0.3522 -1.7562 30 1 4.9245 -0.2918 -3.2390 31 1 3.6997 -1.5754 -3.0926 32 1 6.2779 -1.3982 -1.4676 33 1 5.6956 -2.7697 -3.9789 34 1 8.9122 -4.1282 -3.9379 35 1 6.4257 -3.5931 -5.3432 36 1 10.7815 -6.0753 -7.0029 37 1 9.6691 -6.4110 -9.1692 38 1 7.3643 -5.5418 -9.5063 39 1 4.1084 -3.5389 -1.6397 40 1 5.6313 -3.6850 -0.7287 41 1 5.0115 -1.7876 0.6936 42 1 3.6845 -2.9758 0.7081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805083903.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:19 Heat of formation + Delta-G solvation = 39.263714 kcal Electronic energy + Delta-G solvation = -26948.380419 eV Core-core repulsion = 22880.687874 eV Total energy + Delta-G solvation = -4067.692545 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.32425 -40.80026 -40.09336 -37.90111 -36.66796 -34.64652 -32.91544 -32.35876 -31.91968 -30.45945 -29.94795 -28.83805 -25.10260 -24.16974 -23.51989 -22.99526 -22.18421 -20.89170 -19.99280 -19.09620 -18.94962 -17.85163 -17.36459 -16.79430 -16.39497 -16.35636 -15.64357 -15.49441 -15.36692 -14.95436 -14.39685 -14.28771 -14.23068 -14.16978 -13.81607 -13.53723 -13.22209 -12.96975 -12.78761 -12.46075 -12.27226 -12.01186 -11.80714 -11.05261 -10.84769 -10.59215 -10.52448 -10.36592 -10.30913 -10.19001 -10.10190 -9.80157 -9.72233 -9.48571 -8.95668 -8.65056 -7.86321 -7.00961 -5.96164 -3.32203 0.52202 0.72037 1.53035 2.79544 3.00029 3.22806 3.30100 3.48395 3.51584 3.52919 3.76514 4.18868 4.43906 4.49547 4.51625 4.92791 4.98273 5.09695 5.17778 5.30697 5.36528 5.37775 5.51335 5.62437 5.78040 5.79444 6.00331 6.02333 6.12696 6.19410 6.26874 6.36503 6.53712 6.58929 6.62626 6.65967 6.75312 6.93408 6.95552 7.38727 7.93326 7.94544 8.31705 8.39181 8.92348 9.70441 10.07832 11.19766 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.023320 B = 0.002601 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.374269 B =10760.777096 C =11377.799923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.881 3.119 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.269 1.269 7 C -0.259 4.259 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.130 3.870 11 C -0.141 4.141 12 C 0.167 3.833 13 N -0.737 5.737 14 C 0.711 3.289 15 O -0.570 6.570 16 N -0.527 5.527 17 N -0.519 5.519 18 C 0.388 3.612 19 N -0.522 5.522 20 C 0.148 3.852 21 C -0.208 4.208 22 C -0.058 4.058 23 C -0.016 4.016 24 F -0.132 7.132 25 C -0.143 4.143 26 C 0.151 3.849 27 H 0.263 0.737 28 H 0.028 0.972 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.387 0.613 34 H 0.441 0.559 35 H 0.434 0.566 36 H 0.167 0.833 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.026 0.974 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.671 -11.461 -19.528 29.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.712 3.288 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.194 1.194 7 C -0.388 4.388 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.003 3.997 11 C -0.181 4.181 12 C 0.063 3.937 13 N -0.392 5.392 14 C 0.410 3.590 15 O -0.443 6.443 16 N -0.284 5.284 17 N -0.252 5.252 18 C 0.149 3.851 19 N -0.240 5.240 20 C -0.010 4.010 21 C -0.231 4.231 22 C -0.085 4.085 23 C -0.043 4.043 24 F -0.111 7.111 25 C -0.183 4.183 26 C 0.024 3.976 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.221 0.779 34 H 0.287 0.713 35 H 0.279 0.721 36 H 0.184 0.816 37 H 0.162 0.838 38 H 0.167 0.833 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.044 0.956 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 19.233 -10.994 -17.648 28.324 hybrid contribution -0.505 0.837 -1.431 1.733 sum 18.728 -10.157 -19.079 28.599 Atomic orbital electron populations 1.69829 1.05730 1.26570 1.52980 1.25287 0.95241 0.97579 0.99520 0.86974 0.80162 0.84680 0.77006 1.21645 1.23105 1.19439 1.18930 0.84905 0.94800 1.40128 0.89617 1.44410 1.08734 1.33318 1.46512 1.21305 0.97329 0.92039 0.88994 1.22375 0.97418 0.98406 0.99935 1.20962 0.94153 0.92760 0.85827 1.45543 1.14396 1.61545 1.17701 1.15782 0.82089 0.78632 0.82462 1.91035 1.64669 1.63661 1.24975 1.44569 1.18070 1.63380 1.02338 1.43109 1.16244 1.62313 1.03499 1.18172 0.90028 0.91947 0.84916 1.67155 1.07221 1.15648 1.33972 1.22534 0.99163 0.91590 0.87686 1.21804 0.95591 1.05793 0.99888 1.21441 0.95142 0.94027 0.97879 1.17766 0.82972 1.08473 0.95120 1.91512 1.37030 1.86475 1.96113 1.22415 0.99451 0.98050 0.98375 1.20901 0.92346 0.91349 0.92974 0.92753 0.95366 0.90426 0.92173 0.91105 0.89546 0.77931 0.71312 0.72136 0.81627 0.83828 0.83252 0.91849 0.92079 0.95575 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.67 13.97 55.49 0.78 -26.90 16 2 C 0.02 0.65 5.23 -17.44 -0.09 0.56 16 3 Si 0.88 22.22 24.34 -169.99 -4.14 18.08 16 4 H -0.29 -6.95 6.62 56.52 0.37 -6.58 16 5 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 6 H -0.27 -6.71 6.63 56.52 0.37 -6.34 16 7 C -0.26 -7.19 10.04 -15.06 -0.15 -7.34 16 8 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 9 N -0.61 -14.25 2.77 -172.32 -0.48 -14.73 16 10 C 0.13 2.76 4.20 -3.71 -0.02 2.74 16 11 C -0.14 -2.36 5.55 -26.61 -0.15 -2.50 16 12 C 0.17 2.68 2.42 -67.89 -0.16 2.51 16 13 N -0.74 -9.72 5.04 -58.64 -0.30 -10.02 16 14 C 0.71 10.19 8.64 -86.92 -0.75 9.44 16 15 O -0.57 -10.32 16.84 5.29 0.09 -10.23 16 16 N -0.53 -6.06 6.29 27.63 0.17 -5.89 16 17 N -0.52 -5.02 6.42 31.18 0.20 -4.82 16 18 C 0.39 3.61 7.60 -154.84 -1.18 2.43 16 19 N -0.52 -4.64 9.37 -12.36 -0.12 -4.76 16 20 C 0.15 0.88 11.17 -17.56 -0.20 0.68 16 21 C -0.21 -0.97 10.10 -39.43 -0.40 -1.37 16 22 C -0.06 -0.34 10.15 -39.26 -0.40 -0.74 16 23 C -0.02 -0.13 7.35 -39.10 -0.29 -0.41 16 24 F -0.13 -1.18 16.65 2.25 0.04 -1.14 16 25 C -0.14 -2.45 5.65 -26.61 -0.15 -2.60 16 26 C 0.15 3.02 6.52 -3.71 -0.02 3.00 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.03 0.60 7.07 -51.93 -0.37 0.23 16 29 H 0.08 1.80 4.50 -51.93 -0.23 1.56 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.09 1.53 7.58 -51.93 -0.39 1.14 16 33 H 0.39 4.12 6.52 -40.82 -0.27 3.85 16 34 H 0.44 4.97 8.05 -182.60 -1.47 3.50 16 35 H 0.43 3.67 6.17 -182.60 -1.13 2.55 16 36 H 0.17 0.50 8.06 -52.49 -0.42 0.07 16 37 H 0.14 0.27 8.06 -52.49 -0.42 -0.15 16 38 H 0.15 0.53 8.06 -52.49 -0.42 0.10 16 39 H 0.06 1.10 8.14 -51.92 -0.42 0.67 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 1.33 7.93 -51.92 -0.41 0.92 16 LS Contribution 345.75 15.07 5.21 5.21 Total: -1.00 -33.61 345.75 -9.76 -43.37 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -7.26 Total: 5.42 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: -3.95 Total: 6.40 kcal Atomic # 7 Polarization: -67.36 SS G_CDS: 0.26 Total: -67.10 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.14 Total: 18.08 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.61 -9.76 -43.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805083903.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.629 kcal (2) G-P(sol) polarization free energy of solvation -33.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds