Wall clock time and date at job start Tue Mar 31 2020 14:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86799 * 119.99948 * 2 1 4 4 H 1.48499 * 109.47295 * 272.94573 * 3 2 1 5 5 H 1.48500 * 109.47161 * 32.94602 * 3 2 1 6 6 H 1.48496 * 109.47265 * 152.94217 * 3 2 1 7 7 C 1.38810 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00123 * 339.34696 * 7 2 1 9 9 N 1.36938 * 119.99884 * 159.34491 * 7 2 1 10 10 C 1.46924 * 120.63090 * 332.62490 * 9 7 2 11 11 C 1.53191 * 108.77954 * 233.58963 * 10 9 7 12 12 C 1.53042 * 109.31330 * 305.36889 * 11 10 9 13 13 N 1.46494 * 109.46257 * 181.38283 * 12 11 10 14 14 C 1.34774 * 120.00363 * 154.97201 * 13 12 11 15 15 O 1.21591 * 119.99825 * 0.02562 * 14 13 12 16 16 N 1.34778 * 120.00553 * 180.02562 * 14 13 12 17 17 N 1.40099 * 119.99759 * 359.97438 * 16 14 13 18 18 C 1.39150 * 120.00136 * 179.97438 * 17 16 14 19 19 N 1.32363 * 119.71574 * 0.02562 * 18 17 16 20 20 C 1.31980 * 121.64763 * 179.97438 * 19 18 17 21 21 C 1.38033 * 120.89667 * 0.02562 * 20 19 18 22 22 C 1.38861 * 119.34568 * 0.25351 * 21 20 19 23 23 C 1.38480 * 118.48291 * 359.47957 * 22 21 20 24 24 F 1.35096 * 120.47196 * 180.24402 * 23 22 21 25 25 C 1.53040 * 109.52923 * 61.36665 * 12 11 10 26 26 C 1.46928 * 120.63286 * 152.61096 * 9 7 2 27 27 H 0.97001 * 120.00921 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.58592 * 113.80480 * 10 9 7 29 29 H 1.09002 * 109.70555 * 353.44995 * 10 9 7 30 30 H 1.08996 * 109.50178 * 185.41387 * 11 10 9 31 31 H 1.08999 * 109.52169 * 65.33326 * 11 10 9 32 32 H 1.09001 * 109.45971 * 301.35893 * 12 11 10 33 33 H 0.97000 * 120.00051 * 334.97339 * 13 12 11 34 34 H 0.96996 * 120.00327 * 179.97438 * 16 14 13 35 35 H 0.97002 * 120.00358 * 0.02562 * 17 16 14 36 36 H 1.08000 * 119.55004 * 180.02562 * 20 19 18 37 37 H 1.08001 * 120.32255 * 179.97438 * 21 20 19 38 38 H 1.07995 * 120.75331 * 179.74695 * 22 21 20 39 39 H 1.09008 * 109.49341 * 58.58188 * 25 12 11 40 40 H 1.08997 * 109.50035 * 178.67914 * 25 12 11 41 41 H 1.08997 * 109.58525 * 246.20357 * 26 9 7 42 42 H 1.09008 * 109.58407 * 6.48044 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4353 2.0824 -1.3982 5 1 1.4801 2.6339 0.7614 6 1 3.5773 1.4231 0.6369 7 6 2.0102 -1.2021 -0.0005 8 1 1.5223 -2.1075 0.3289 9 7 3.3136 -1.2400 -0.4189 10 6 3.8172 -0.2582 -1.3891 11 6 4.4621 -1.0075 -2.5593 12 6 5.5289 -1.9640 -2.0216 13 7 6.1707 -2.6582 -3.1406 14 6 7.4213 -3.1421 -3.0054 15 8 8.0167 -3.0028 -1.9545 16 7 8.0120 -3.7803 -4.0351 17 7 7.3258 -3.9413 -5.2458 18 6 7.9358 -4.5998 -6.3091 19 7 9.1644 -5.0723 -6.1703 20 6 9.7789 -5.7032 -7.1533 21 6 9.1575 -5.8938 -8.3710 22 6 7.8703 -5.4089 -8.5615 23 6 7.2482 -4.7561 -7.5106 24 9 5.9945 -4.2726 -7.6502 25 6 4.8750 -2.9897 -1.0929 26 6 4.2351 -2.2629 0.0941 27 1 -0.4851 0.8400 -0.0004 28 1 4.5596 0.3805 -0.9107 29 1 2.9921 0.3522 -1.7562 30 1 4.9245 -0.2918 -3.2390 31 1 3.6997 -1.5754 -3.0926 32 1 6.2779 -1.3982 -1.4676 33 1 5.6956 -2.7697 -3.9789 34 1 8.9122 -4.1282 -3.9379 35 1 6.4257 -3.5931 -5.3432 36 1 10.7815 -6.0753 -7.0029 37 1 9.6691 -6.4110 -9.1692 38 1 7.3643 -5.5418 -9.5063 39 1 4.1084 -3.5389 -1.6397 40 1 5.6313 -3.6850 -0.7287 41 1 5.0115 -1.7876 0.6936 42 1 3.6845 -2.9758 0.7081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805083903.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:19 Heat of formation + Delta-G solvation = 15.214004 kcal Electronic energy + Delta-G solvation = -26949.423293 eV Core-core repulsion = 22880.687874 eV Total energy + Delta-G solvation = -4068.735419 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.92300 -41.65740 -40.91694 -39.37728 -37.55859 -36.15213 -34.12115 -33.40695 -32.89281 -32.00392 -31.52368 -29.49765 -26.86840 -24.84082 -24.53230 -24.09622 -23.69678 -22.08508 -21.36628 -20.20782 -19.70044 -18.83386 -18.38209 -17.91526 -17.50368 -17.06593 -17.00983 -16.57235 -16.29275 -15.96310 -15.90586 -15.63332 -15.36684 -15.00164 -14.80971 -14.74038 -14.53400 -14.26977 -14.01883 -13.84186 -13.50615 -13.22715 -13.04742 -12.60683 -12.58316 -12.30251 -12.04630 -11.85540 -11.68411 -11.58303 -11.34717 -10.90777 -10.72884 -10.71806 -10.48779 -10.12667 -8.97736 -8.57085 -8.16260 -5.48856 0.02503 0.23046 0.73666 1.29669 1.43344 1.51958 1.78680 1.90977 2.41539 2.70917 2.95133 3.05261 3.14243 3.32268 3.69461 3.73964 3.93150 3.95188 4.09221 4.18812 4.29883 4.41120 4.46628 4.60136 4.66323 4.70779 4.83325 4.89374 4.93787 4.99467 5.05495 5.11239 5.13745 5.15792 5.35230 5.39481 5.64143 5.84282 5.86675 6.12744 6.13500 6.73914 6.90167 7.06901 7.33087 7.60851 8.01221 9.03508 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.023320 B = 0.002601 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.374269 B =10760.777096 C =11377.799923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.034 4.034 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.312 1.312 6 H -0.264 1.264 7 C -0.249 4.249 8 H 0.053 0.947 9 N -0.619 5.619 10 C 0.121 3.879 11 C -0.129 4.129 12 C 0.177 3.823 13 N -0.725 5.725 14 C 0.712 3.288 15 O -0.611 6.611 16 N -0.516 5.516 17 N -0.523 5.523 18 C 0.365 3.635 19 N -0.544 5.544 20 C 0.138 3.862 21 C -0.190 4.190 22 C -0.059 4.059 23 C -0.031 4.031 24 F -0.141 7.141 25 C -0.130 4.130 26 C 0.147 3.853 27 H 0.262 0.738 28 H 0.034 0.966 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.402 0.598 34 H 0.443 0.557 35 H 0.437 0.563 36 H 0.194 0.806 37 H 0.179 0.821 38 H 0.174 0.826 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.032 0.968 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.240 -11.993 -22.372 33.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.229 4.229 3 Si 0.773 3.227 4 H -0.195 1.195 5 H -0.241 1.241 6 H -0.189 1.189 7 C -0.378 4.378 8 H 0.070 0.930 9 N -0.343 5.343 10 C -0.004 4.004 11 C -0.168 4.168 12 C 0.072 3.928 13 N -0.381 5.381 14 C 0.411 3.589 15 O -0.488 6.488 16 N -0.270 5.270 17 N -0.258 5.258 18 C 0.129 3.871 19 N -0.262 5.262 20 C -0.019 4.019 21 C -0.212 4.212 22 C -0.085 4.085 23 C -0.059 4.059 24 F -0.120 7.120 25 C -0.170 4.170 26 C 0.022 3.978 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.238 0.762 34 H 0.289 0.711 35 H 0.282 0.718 36 H 0.211 0.789 37 H 0.197 0.803 38 H 0.191 0.809 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.050 0.950 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 21.856 -11.568 -20.582 32.173 hybrid contribution -1.197 0.805 -0.667 1.590 sum 20.660 -10.763 -21.249 31.530 Atomic orbital electron populations 1.69955 1.07387 1.27255 1.55602 1.25891 0.95827 1.00877 1.00265 0.85948 0.78627 0.80236 0.77860 1.19464 1.24112 1.18857 1.18854 0.86582 0.93607 1.38769 0.92962 1.44511 1.07788 1.34479 1.47561 1.21376 0.96973 0.92039 0.90015 1.22184 0.97470 0.98757 0.98401 1.20641 0.93615 0.92274 0.86261 1.45156 1.14160 1.61131 1.17610 1.15755 0.82027 0.78695 0.82422 1.91007 1.65649 1.65286 1.26846 1.44245 1.17939 1.62104 1.02727 1.43092 1.16401 1.63511 1.02822 1.18341 0.90677 0.92978 0.85116 1.67164 1.07280 1.16335 1.35469 1.23148 1.00260 0.90846 0.87658 1.22229 0.94874 1.03999 1.00120 1.21848 0.95610 0.92929 0.98103 1.18006 0.82905 1.09412 0.95538 1.91487 1.37592 1.86752 1.96164 1.22236 0.99286 0.98026 0.97435 1.21008 0.91840 0.90698 0.94265 0.92904 0.94788 0.92230 0.89131 0.90825 0.90670 0.76175 0.71133 0.71756 0.78898 0.80318 0.80855 0.91951 0.91580 0.95033 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.87 13.97 21.65 0.30 -59.57 16 2 C -0.03 -1.97 5.23 84.86 0.44 -1.52 16 3 Si 0.94 46.22 24.34 68.60 1.67 47.89 16 4 H -0.27 -12.13 6.62 99.48 0.66 -11.48 16 5 H -0.31 -15.64 7.11 99.48 0.71 -14.93 16 6 H -0.26 -12.53 6.63 99.48 0.66 -11.87 16 7 C -0.25 -14.07 10.04 84.03 0.84 -13.23 16 8 H 0.05 3.24 8.06 -2.91 -0.02 3.22 16 9 N -0.62 -28.96 2.77 -699.09 -1.94 -30.90 16 10 C 0.12 4.97 4.20 86.36 0.36 5.34 16 11 C -0.13 -3.98 5.55 30.67 0.17 -3.81 16 12 C 0.18 5.37 2.42 45.02 0.11 5.48 16 13 N -0.72 -17.86 5.04 -457.69 -2.31 -20.16 16 14 C 0.71 19.61 8.64 179.06 1.55 21.16 16 15 O -0.61 -21.76 16.84 -4.00 -0.07 -21.82 16 16 N -0.52 -11.37 6.29 -184.74 -1.16 -12.54 16 17 N -0.52 -9.53 6.42 -55.25 -0.35 -9.89 16 18 C 0.37 6.32 7.60 133.06 1.01 7.33 16 19 N -0.54 -8.76 9.37 -193.02 -1.81 -10.57 16 20 C 0.14 1.23 11.17 84.62 0.95 2.18 16 21 C -0.19 -1.06 10.10 22.37 0.23 -0.83 16 22 C -0.06 -0.51 10.15 22.48 0.23 -0.28 16 23 C -0.03 -0.46 7.35 22.58 0.17 -0.29 16 24 F -0.14 -2.33 16.65 44.97 0.75 -1.59 16 25 C -0.13 -4.32 5.65 30.67 0.17 -4.14 16 26 C 0.15 5.88 6.52 86.36 0.56 6.44 16 27 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 28 H 0.03 1.37 7.07 -2.39 -0.02 1.35 16 29 H 0.06 2.66 4.50 -2.39 -0.01 2.65 16 30 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.08 2.53 7.58 -2.39 -0.02 2.51 16 33 H 0.40 7.71 6.52 -92.71 -0.60 7.10 16 34 H 0.44 9.67 8.05 -213.33 -1.72 7.95 16 35 H 0.44 6.88 6.17 -213.32 -1.32 5.56 16 36 H 0.19 0.49 8.06 -2.91 -0.02 0.46 16 37 H 0.18 -0.26 8.06 -2.91 -0.02 -0.28 16 38 H 0.17 0.59 8.06 -2.91 -0.02 0.57 16 39 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 40 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.06 2.41 7.93 -2.38 -0.02 2.39 16 Total: -1.00 -74.57 345.75 -0.77 -75.33 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -2.64 Total: 19.99 kcal Atomic # 6 Polarization: 17.03 SS G_CDS: 6.79 Total: 23.82 kcal Atomic # 7 Polarization: -136.36 SS G_CDS: -7.27 Total: -143.63 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.07 Total: -21.82 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.75 Total: -1.59 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.67 Total: 47.89 kcal Total: -74.57 -0.77 -75.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805083903.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.549 kcal (2) G-P(sol) polarization free energy of solvation -74.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds