Wall clock time and date at job start Tue Mar 31 2020 14:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47195 * 269.99383 * 3 2 1 5 5 H 1.48498 * 109.47355 * 29.99940 * 3 2 1 6 6 H 1.48504 * 109.46850 * 149.99954 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00161 * 163.08302 * 7 2 1 9 9 N 1.36942 * 120.00203 * 343.08250 * 7 2 1 10 10 C 1.46922 * 120.62796 * 331.83144 * 9 7 2 11 11 C 1.53192 * 108.89269 * 233.51528 * 10 9 7 12 12 C 1.53065 * 109.29648 * 305.57538 * 11 10 9 13 13 N 1.46503 * 109.44591 * 181.23295 * 12 11 10 14 14 C 1.34775 * 119.99376 * 84.79556 * 13 12 11 15 15 O 1.21587 * 120.00649 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99840 * 180.02562 * 14 13 12 17 17 N 1.40106 * 120.00134 * 0.02562 * 16 14 13 18 18 C 1.38991 * 120.00194 * 179.97438 * 17 16 14 19 19 C 1.39067 * 119.68656 * 179.72852 * 18 17 16 20 20 C 1.38383 * 119.15287 * 179.79744 * 19 18 17 21 21 C 1.38759 * 118.53528 * 0.47290 * 20 19 18 22 22 C 1.38369 * 119.30286 * 359.75275 * 21 20 19 23 23 F 1.35103 * 119.60089 * 179.97438 * 22 21 20 24 24 N 1.32133 * 120.79494 * 0.02562 * 22 21 20 25 25 C 1.53049 * 109.65631 * 61.15762 * 12 11 10 26 26 C 1.46924 * 120.63278 * 151.81256 * 9 7 2 27 27 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.58836 * 353.37398 * 10 9 7 29 29 H 1.08998 * 109.58900 * 113.65916 * 10 9 7 30 30 H 1.09005 * 109.49756 * 65.39178 * 11 10 9 31 31 H 1.09004 * 109.49788 * 185.48181 * 11 10 9 32 32 H 1.08996 * 109.35399 * 301.12990 * 12 11 10 33 33 H 0.96995 * 120.00576 * 264.80141 * 13 12 11 34 34 H 0.96997 * 119.99918 * 180.02562 * 16 14 13 35 35 H 0.97004 * 119.99208 * 0.02562 * 17 16 14 36 36 H 1.07994 * 120.42535 * 0.02562 * 19 18 17 37 37 H 1.08005 * 120.73141 * 180.21965 * 20 19 18 38 38 H 1.07997 * 120.34708 * 179.76498 * 21 20 19 39 39 H 1.09002 * 109.49883 * 178.75013 * 25 12 11 40 40 H 1.08997 * 109.52642 * 58.66321 * 25 12 11 41 41 H 1.09007 * 109.58325 * 246.20224 * 26 9 7 42 42 H 1.08996 * 109.58499 * 6.48109 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2716 9 7 1.3701 -2.3623 0.3462 10 6 0.2263 -2.3400 1.2679 11 6 0.4941 -3.3198 2.4146 12 6 0.8120 -4.7008 1.8361 13 7 1.0399 -5.6475 2.9307 14 6 -0.0049 -6.2695 3.5120 15 8 -1.1365 -6.0453 3.1278 16 7 0.2046 -7.1400 4.5194 17 7 1.5084 -7.3980 4.9626 18 6 1.7244 -8.2954 6.0018 19 6 3.0217 -8.5508 6.4328 20 6 3.2237 -9.4430 7.4711 21 6 2.1184 -10.0600 8.0395 22 6 0.8553 -9.7633 7.5585 23 9 -0.2250 -10.3609 8.1071 24 7 0.6932 -8.9034 6.5684 25 6 2.0675 -4.6174 0.9647 26 6 1.8138 -3.6528 -0.1981 27 1 -0.4850 0.8400 -0.0004 28 1 0.0994 -1.3343 1.6687 29 1 -0.6774 -2.6381 0.7363 30 1 1.3429 -2.9692 3.0020 31 1 -0.3880 -3.3841 3.0518 32 1 -0.0282 -5.0410 1.2308 33 1 1.9426 -5.8266 3.2371 34 1 -0.5474 -7.5880 4.9375 35 1 2.2602 -6.9497 4.5446 36 1 3.8605 -8.0564 5.9656 37 1 4.2201 -9.6576 7.8284 38 1 2.2426 -10.7641 8.8489 39 1 2.3042 -5.6063 0.5721 40 1 2.9028 -4.2540 1.5632 41 1 1.0401 -4.0604 -0.8488 42 1 2.7331 -3.5130 -0.7667 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805084148.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:26 Heat of formation + Delta-G solvation = 13.811382 kcal Electronic energy + Delta-G solvation = -26592.579135 eV Core-core repulsion = 22523.782894 eV Total energy + Delta-G solvation = -4068.796241 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.02490 -41.67188 -40.91697 -39.13014 -37.45183 -36.06783 -33.97702 -33.49478 -33.01341 -31.70387 -31.05172 -29.38628 -26.93575 -24.72903 -24.20907 -23.94262 -23.85668 -21.93729 -21.27338 -20.04720 -19.82210 -18.78961 -18.33047 -17.43068 -17.15340 -17.00496 -16.91031 -16.57634 -16.42505 -16.29276 -15.82227 -15.36229 -15.32797 -14.94811 -14.77103 -14.65591 -14.36091 -14.07133 -14.03824 -13.19098 -13.15184 -13.02221 -12.83130 -12.66194 -12.53855 -12.13177 -12.08140 -11.88626 -11.67195 -11.55700 -11.28979 -10.99331 -10.83538 -10.58758 -10.45821 -10.06005 -8.70461 -8.59454 -7.86531 -5.32829 0.04586 0.30722 0.81606 1.48187 1.49868 1.59411 1.78835 1.94284 2.52566 2.54160 2.68597 3.29765 3.49914 3.67388 3.82211 3.87071 3.98683 4.07777 4.26981 4.32985 4.40145 4.48321 4.67512 4.76505 4.78825 4.84340 4.99928 5.04672 5.08364 5.13551 5.17511 5.24451 5.33057 5.44361 5.48156 5.64314 5.66932 5.70875 5.86555 6.17579 6.39675 6.64710 7.13539 7.14533 7.36353 7.85574 8.38142 9.20635 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.025988 B = 0.002249 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.178691 B =12445.238677 C =12778.394313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.056 4.056 3 Si 0.969 3.031 4 H -0.285 1.285 5 H -0.298 1.298 6 H -0.265 1.265 7 C -0.259 4.259 8 H 0.076 0.924 9 N -0.609 5.609 10 C 0.182 3.818 11 C -0.131 4.131 12 C 0.179 3.821 13 N -0.717 5.717 14 C 0.709 3.291 15 O -0.620 6.620 16 N -0.526 5.526 17 N -0.512 5.512 18 C 0.420 3.580 19 C -0.224 4.224 20 C 0.006 3.994 21 C -0.241 4.241 22 C 0.324 3.676 23 F -0.127 7.127 24 N -0.614 5.614 25 C -0.120 4.120 26 C 0.140 3.860 27 H 0.248 0.752 28 H 0.054 0.946 29 H -0.012 1.012 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.407 0.593 34 H 0.437 0.563 35 H 0.446 0.554 36 H 0.180 0.820 37 H 0.192 0.808 38 H 0.168 0.832 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.011 0.989 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.260 -21.895 16.413 30.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.251 4.251 3 Si 0.797 3.203 4 H -0.212 1.212 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.389 4.389 8 H 0.094 0.906 9 N -0.332 5.332 10 C 0.055 3.945 11 C -0.172 4.172 12 C 0.074 3.926 13 N -0.374 5.374 14 C 0.408 3.592 15 O -0.497 6.497 16 N -0.279 5.279 17 N -0.249 5.249 18 C 0.184 3.816 19 C -0.250 4.250 20 C -0.019 4.019 21 C -0.265 4.265 22 C 0.171 3.829 23 F -0.106 7.106 24 N -0.340 5.340 25 C -0.159 4.159 26 C 0.014 3.986 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.006 0.994 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.244 0.756 34 H 0.282 0.718 35 H 0.293 0.707 36 H 0.197 0.803 37 H 0.209 0.791 38 H 0.186 0.814 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.029 0.971 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.406 -21.306 15.658 28.796 hybrid contribution 0.070 0.839 0.294 0.892 sum 11.476 -20.467 15.952 28.374 Atomic orbital electron populations 1.70211 1.06958 1.25834 1.55583 1.25892 0.95973 1.01871 1.01398 0.85261 0.78144 0.79385 0.77552 1.21157 1.22424 1.18960 1.19567 0.93052 0.85713 1.40596 0.90648 1.44353 1.35629 1.02746 1.50514 1.20457 0.87882 0.97309 0.88824 1.22337 1.00391 0.95902 0.98552 1.20624 0.98937 0.86742 0.86340 1.45059 1.08040 1.45959 1.38350 1.15833 0.85026 0.78924 0.79395 1.91018 1.23499 1.68779 1.66441 1.44359 0.99855 1.47085 1.36612 1.43215 0.97593 1.47358 1.36690 1.18007 0.89388 0.87662 0.86543 1.21672 0.94793 1.05600 1.02909 1.21721 1.00339 0.89425 0.90419 1.21897 0.90188 1.07717 1.06696 1.18020 0.83521 0.90967 0.90364 1.91601 1.55662 1.80499 1.82849 1.65886 1.37428 1.15382 1.15299 1.22145 0.95969 1.00579 0.97247 1.21060 0.98017 0.85528 0.93964 0.94247 0.92726 0.99395 0.91726 0.93831 0.92343 0.75613 0.71772 0.70697 0.80251 0.79118 0.81430 0.88752 0.90084 0.97134 0.91107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.71 11.20 21.65 0.24 -56.46 16 2 C -0.06 -3.14 4.92 84.86 0.42 -2.73 16 3 Si 0.97 44.43 29.59 68.60 2.03 46.46 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 5 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.26 -13.88 9.58 84.03 0.81 -13.08 16 8 H 0.08 3.82 7.89 -2.91 -0.02 3.80 16 9 N -0.61 -29.95 3.00 -699.10 -2.09 -32.04 16 10 C 0.18 9.11 5.30 86.36 0.46 9.57 16 11 C -0.13 -5.18 5.66 30.68 0.17 -5.00 16 12 C 0.18 5.80 2.41 45.03 0.11 5.91 16 13 N -0.72 -17.68 5.04 -457.63 -2.31 -19.99 16 14 C 0.71 21.05 8.64 179.05 1.55 22.60 16 15 O -0.62 -25.03 16.84 -3.99 -0.07 -25.10 16 16 N -0.53 -12.33 6.29 -184.74 -1.16 -13.49 16 17 N -0.51 -7.80 6.42 -55.46 -0.36 -8.15 16 18 C 0.42 6.43 7.59 133.04 1.01 7.44 16 19 C -0.22 -1.59 9.93 22.50 0.22 -1.37 16 20 C 0.01 0.03 10.16 22.43 0.23 0.26 16 21 C -0.24 -2.37 10.08 22.43 0.23 -2.14 16 22 C 0.32 5.90 8.40 84.68 0.71 6.61 16 23 F -0.13 -2.65 17.29 44.97 0.78 -1.88 16 24 N -0.61 -12.87 9.38 -194.35 -1.82 -14.69 16 25 C -0.12 -3.38 5.55 30.67 0.17 -3.21 16 26 C 0.14 5.39 6.52 86.36 0.56 5.96 16 27 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 28 H 0.05 3.10 6.06 -2.39 -0.01 3.08 16 29 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 30 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 31 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.06 2.26 7.58 -2.39 -0.02 2.24 16 33 H 0.41 6.45 6.52 -92.71 -0.60 5.85 16 34 H 0.44 11.26 8.05 -213.32 -1.72 9.54 16 35 H 0.45 3.90 6.69 -213.31 -1.43 2.47 16 36 H 0.18 -0.02 8.06 -2.91 -0.02 -0.04 16 37 H 0.19 -0.64 8.06 -2.91 -0.02 -0.66 16 38 H 0.17 0.82 8.06 -2.91 -0.02 0.80 16 39 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 42 H 0.07 2.55 7.93 -2.39 -0.02 2.53 16 Total: -1.00 -78.41 353.16 -0.78 -79.19 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -2.66 Total: 15.33 kcal Atomic # 6 Polarization: 24.18 SS G_CDS: 6.64 Total: 30.82 kcal Atomic # 7 Polarization: -137.33 SS G_CDS: -7.50 Total: -144.83 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.07 Total: -25.10 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.78 Total: -1.88 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -78.41 -0.78 -79.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805084148.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.000 kcal (2) G-P(sol) polarization free energy of solvation -78.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds