Wall clock time and date at job start Tue Mar 31 2020 14:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 113.99864 * 2 1 4 4 O 1.42900 * 109.46930 * 84.53529 * 3 2 1 5 5 C 1.42904 * 113.99945 * 287.13228 * 4 3 2 6 6 C 1.50703 * 109.47279 * 204.53000 * 3 2 1 7 7 C 1.35132 * 125.61636 * 180.02562 * 6 3 2 8 8 C 1.40366 * 107.11123 * 180.02562 * 7 6 3 9 9 C 1.36538 * 106.70990 * 0.02562 * 8 7 6 10 10 C 1.46660 * 125.98448 * 179.97438 * 9 8 7 11 11 O 1.21693 * 120.00413 * 6.70490 * 10 9 8 12 12 N 1.34780 * 119.99588 * 186.70534 * 10 9 8 13 13 C 1.46925 * 120.62662 * 174.99385 * 12 10 9 14 14 C 1.53193 * 108.89486 * 233.67368 * 13 12 10 15 15 C 1.53040 * 109.31064 * 305.29797 * 14 13 12 16 16 C 1.50701 * 109.46249 * 181.37052 * 15 14 13 17 17 H 1.08000 * 119.99539 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00536 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99766 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00246 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47112 * 60.00059 * 20 18 16 22 22 H 1.48501 * 109.46969 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46975 * 299.99987 * 20 18 16 24 24 C 1.53041 * 109.54203 * 61.36085 * 15 14 13 25 25 C 1.47201 * 120.81632 * 355.13126 * 12 10 9 26 26 O 1.33925 * 125.61638 * 0.33263 * 6 3 2 27 27 H 1.09000 * 109.47582 * 65.91888 * 1 2 3 28 28 H 1.09003 * 109.47390 * 185.92111 * 1 2 3 29 29 H 1.09000 * 109.47159 * 305.92018 * 1 2 3 30 30 H 1.08996 * 109.47526 * 324.53179 * 3 2 1 31 31 H 1.09002 * 109.47184 * 193.13705 * 5 4 3 32 32 H 1.09002 * 109.46700 * 313.12948 * 5 4 3 33 33 H 1.08997 * 109.47613 * 73.13044 * 5 4 3 34 34 H 1.07996 * 126.43945 * 0.03719 * 7 6 3 35 35 H 1.08001 * 126.64105 * 180.02562 * 8 7 6 36 36 H 1.09000 * 109.58635 * 113.81477 * 13 12 10 37 37 H 1.08997 * 109.59187 * 353.53468 * 13 12 10 38 38 H 1.09003 * 109.49634 * 65.24408 * 14 13 12 39 39 H 1.08996 * 109.50027 * 185.31197 * 14 13 12 40 40 H 1.09001 * 109.46120 * 301.34338 * 15 14 13 41 41 H 0.96995 * 119.99880 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.49347 * 58.58443 * 24 15 14 43 43 H 1.08996 * 109.50073 * 178.68292 * 24 15 14 44 44 H 1.09003 * 109.53264 * 6.54187 * 25 12 10 45 45 H 1.09003 * 109.68067 * 246.23357 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 2.0867 1.7927 1.3412 5 6 0.8246 2.1698 1.8955 6 6 3.3953 1.2387 -0.5899 7 6 4.2357 2.2854 -0.7454 8 6 5.4115 1.7879 -1.3288 9 6 5.2264 0.4463 -1.5024 10 6 6.1955 -0.4894 -2.0821 11 8 7.3220 -0.1126 -2.3467 12 7 5.8385 -1.7668 -2.3217 13 6 6.7606 -2.6867 -3.0016 14 6 6.0445 -3.3069 -4.2055 15 6 4.7413 -3.9592 -3.7383 16 6 4.0505 -4.5997 -4.9146 17 1 4.4960 -4.5465 -5.8969 18 6 2.8498 -5.2536 -4.7367 19 7 2.3070 -5.3179 -3.5405 20 14 1.9939 -6.0481 -6.1946 21 1 2.8810 -7.0816 -6.7863 22 1 0.7293 -6.6810 -5.7415 23 1 1.6909 -5.0128 -7.2151 24 6 3.8265 -2.8951 -3.1277 25 6 4.5175 -2.2702 -1.9116 26 8 3.9940 0.1332 -1.0516 27 1 -0.3634 0.4193 -0.9382 28 1 -0.3634 -1.0222 0.1060 29 1 -0.3633 0.6029 0.8322 30 1 1.3934 1.9778 -0.5963 31 1 0.9853 2.7389 2.8111 32 1 0.2811 2.7834 1.1770 33 1 0.2448 1.2748 2.1209 34 1 4.0396 3.3116 -0.4721 35 1 6.2919 2.3563 -1.5899 36 1 7.0655 -3.4741 -2.3124 37 1 7.6391 -2.1385 -3.3417 38 1 5.8206 -2.5294 -4.9359 39 1 6.6860 -4.0608 -4.6617 40 1 4.9638 -4.7196 -2.9897 41 1 1.4625 -5.7783 -3.4152 42 1 3.6236 -2.1215 -3.8682 43 1 2.8892 -3.3562 -2.8164 44 1 3.9145 -1.4449 -1.5328 45 1 4.6372 -3.0230 -1.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807220360.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:02 Heat of formation + Delta-G solvation = -90.750818 kcal Electronic energy + Delta-G solvation = -28495.394388 eV Core-core repulsion = 24480.938793 eV Total energy + Delta-G solvation = -4014.455595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.75703 -39.57758 -39.23333 -36.86334 -36.33079 -33.69405 -33.04739 -31.60132 -30.85003 -30.04795 -28.19060 -26.38960 -26.32211 -25.18538 -23.25782 -22.52490 -21.65138 -21.34386 -20.14623 -18.87116 -17.78985 -17.54785 -17.24524 -16.92860 -16.22894 -16.08792 -15.63842 -14.91274 -14.68914 -14.57019 -14.43479 -13.88642 -13.83029 -13.59812 -13.35846 -13.10042 -12.90035 -12.82024 -12.72761 -12.41566 -12.19768 -12.14404 -11.70868 -11.55035 -11.09509 -10.91617 -10.65258 -10.40998 -10.36124 -10.12933 -10.12318 -10.00511 -9.88174 -9.52217 -9.17674 -8.90018 -8.65496 -8.35701 -8.01397 -6.00964 -4.07439 1.06959 2.17329 2.47230 3.19394 3.30355 3.34766 3.36418 3.37978 3.47432 3.74511 4.29218 4.41848 4.53167 4.75690 4.81348 4.86501 4.95203 5.03973 5.09869 5.28375 5.32796 5.47428 5.54307 5.60895 5.73533 5.81460 5.92541 5.94971 6.13548 6.18490 6.29269 6.43280 6.56253 6.58169 6.65280 6.70558 6.85954 6.99002 7.08517 7.15547 7.31843 7.67201 7.83580 7.93985 8.06329 8.36797 8.41765 8.95548 9.57322 11.04418 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.011488 B = 0.004186 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.829409 B = 6687.795841 C = 8748.238908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.377 6.377 3 C 0.327 3.673 4 O -0.383 6.383 5 C 0.021 3.979 6 C 0.002 3.998 7 C -0.183 4.183 8 C -0.134 4.134 9 C -0.048 4.048 10 C 0.593 3.407 11 O -0.539 6.539 12 N -0.586 5.586 13 C 0.112 3.888 14 C -0.124 4.124 15 C 0.048 3.952 16 C -0.513 4.513 17 H 0.054 0.946 18 C 0.062 3.938 19 N -0.890 5.890 20 Si 0.890 3.110 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.278 1.278 24 C -0.119 4.119 25 C 0.087 3.913 26 O -0.124 6.124 27 H 0.049 0.951 28 H 0.097 0.903 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.157 0.843 35 H 0.162 0.838 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.028 0.972 41 H 0.261 0.739 42 H 0.037 0.963 43 H 0.106 0.894 44 H 0.098 0.902 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.112 15.311 9.584 18.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.297 6.297 3 C 0.231 3.769 4 O -0.304 6.304 5 C -0.075 4.075 6 C -0.050 4.050 7 C -0.202 4.202 8 C -0.154 4.154 9 C -0.101 4.101 10 C 0.380 3.620 11 O -0.420 6.420 12 N -0.316 5.316 13 C -0.010 4.010 14 C -0.162 4.162 15 C 0.029 3.971 16 C -0.551 4.551 17 H 0.073 0.927 18 C -0.139 4.139 19 N -0.529 5.529 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.204 1.204 24 C -0.158 4.158 25 C -0.034 4.034 26 O -0.019 6.019 27 H 0.067 0.933 28 H 0.116 0.884 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.175 0.825 35 H 0.180 0.820 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.046 0.954 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.124 0.876 44 H 0.115 0.885 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.538 14.918 9.615 18.097 hybrid contribution -1.143 -0.128 -0.799 1.400 sum -4.681 14.790 8.816 17.843 Atomic orbital electron populations 1.23227 0.80112 1.04422 1.00480 1.88189 1.20515 1.27336 1.93663 1.21062 0.87384 0.84618 0.83796 1.88105 1.30641 1.82385 1.29236 1.23083 0.85572 0.99636 0.99158 1.21772 0.94834 0.85958 1.02441 1.21401 0.93552 0.99960 1.05297 1.21858 0.99716 0.92737 1.01102 1.22422 0.84864 0.95764 1.07050 1.16722 0.85350 0.81232 0.78686 1.90815 1.18962 1.77320 1.54870 1.48299 1.18079 1.09361 1.55908 1.21803 0.92272 0.91832 0.95091 1.22026 0.99261 0.99357 0.95529 1.18662 0.89604 0.92802 0.96030 1.21156 1.05638 1.33835 0.94478 0.92746 1.24955 0.97238 0.96071 0.95626 1.69839 1.18862 1.43144 1.21070 0.86684 0.78854 0.79636 0.82972 1.20303 1.21326 1.20374 1.21992 1.02249 0.97706 0.93831 1.22705 0.81732 0.99458 0.99467 1.84444 1.24873 1.32580 1.60051 0.93272 0.88435 0.93059 0.89541 0.88987 0.93491 0.92675 0.82535 0.81995 0.91694 0.90112 0.92866 0.91835 0.95365 0.92937 0.94380 0.87589 0.88523 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 10.65 101.05 1.08 1.20 16 2 O -0.38 -5.19 10.37 -64.47 -0.67 -5.86 16 3 C 0.33 3.94 3.29 36.01 0.12 4.05 16 4 O -0.38 -4.40 10.58 -59.04 -0.62 -5.03 16 5 C 0.02 0.15 9.83 101.05 0.99 1.14 16 6 C 0.00 0.03 6.72 -35.41 -0.24 -0.21 16 7 C -0.18 -2.32 10.76 -39.89 -0.43 -2.75 16 8 C -0.13 -1.94 10.63 -39.39 -0.42 -2.36 16 9 C -0.05 -0.84 6.87 -36.80 -0.25 -1.09 16 10 C 0.59 11.48 7.66 -12.86 -0.10 11.38 16 11 O -0.54 -11.21 16.31 5.19 0.08 -11.13 16 12 N -0.59 -11.48 2.98 -174.09 -0.52 -12.00 16 13 C 0.11 2.11 6.41 -3.71 -0.02 2.08 16 14 C -0.12 -2.57 5.30 -26.61 -0.14 -2.71 16 15 C 0.05 1.15 2.06 -91.73 -0.19 0.96 16 16 C -0.51 -13.79 8.56 -34.44 -0.29 -14.08 16 17 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 18 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 19 N -0.89 -24.63 11.31 55.43 0.63 -24.00 16 20 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 C -0.12 -2.76 5.15 -26.61 -0.14 -2.90 16 25 C 0.09 1.75 6.34 -3.56 -0.02 1.72 16 26 O -0.12 -2.13 6.84 -8.25 -0.06 -2.18 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.35 4.59 -51.93 -0.24 0.12 16 30 H 0.09 0.78 7.64 -51.93 -0.40 0.38 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.24 7.88 -51.93 -0.41 -0.17 16 33 H 0.05 0.37 5.93 -51.93 -0.31 0.06 16 34 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.16 2.07 8.06 -52.49 -0.42 1.65 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.08 1.47 7.03 -51.93 -0.37 1.11 16 38 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 42 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.11 2.72 6.03 -51.93 -0.31 2.40 16 44 H 0.10 1.90 3.76 -55.32 -0.21 1.69 16 45 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 363.08 15.07 5.47 5.47 Total: -1.00 -31.56 363.08 -7.29 -38.85 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.43 Total: 1.94 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -0.15 Total: -1.96 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.11 Total: -36.00 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -1.26 Total: -24.20 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.56 -7.29 -38.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807220360.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.902 kcal (2) G-P(sol) polarization free energy of solvation -31.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds