Wall clock time and date at job start Tue Mar 31 2020 14:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35129 * 125.61635 * 2 1 4 4 C 1.40356 * 107.11594 * 180.02562 * 3 2 1 5 5 C 1.36545 * 106.70897 * 0.02562 * 4 3 2 6 6 C 1.46658 * 125.98797 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00161 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99639 * 179.97438 * 6 5 4 9 9 N 1.40109 * 119.99659 * 179.72212 * 8 6 5 10 10 C 1.34774 * 119.99481 * 180.27982 * 9 8 6 11 11 O 1.21593 * 119.99194 * 180.02562 * 10 9 8 12 12 N 1.34774 * 120.00548 * 0.02562 * 10 9 8 13 13 C 1.46499 * 119.99899 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47073 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.47124 * 300.00146 * 14 13 12 16 16 C 1.53000 * 109.46989 * 59.99821 * 14 13 12 17 17 C 1.53000 * 109.47355 * 179.97438 * 14 13 12 18 18 C 1.50699 * 109.46978 * 179.97438 * 17 14 13 19 19 H 1.07998 * 120.00139 * 0.02562 * 18 17 14 20 20 C 1.37878 * 119.99709 * 179.97438 * 18 17 14 21 21 N 1.31513 * 120.00095 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99895 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47263 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47346 * 120.00430 * 22 20 18 25 25 H 1.48501 * 109.47057 * 240.00285 * 22 20 18 26 26 O 1.33933 * 125.61495 * 180.33545 * 2 1 3 27 27 H 1.09005 * 109.46880 * 89.99806 * 1 2 3 28 28 H 1.08998 * 109.47359 * 209.99953 * 1 2 3 29 29 H 1.08998 * 109.47433 * 329.99941 * 1 2 3 30 30 H 1.08003 * 126.44130 * 0.02562 * 3 2 1 31 31 H 1.08007 * 126.64671 * 180.02562 * 4 3 2 32 32 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 33 33 H 0.97000 * 119.99800 * 0.27836 * 9 8 6 34 34 H 0.96996 * 120.00143 * 0.02562 * 12 10 9 35 35 H 1.08998 * 109.47134 * 299.99549 * 13 12 10 36 36 H 1.08994 * 109.47397 * 59.99841 * 13 12 10 37 37 H 1.08998 * 109.47089 * 59.99697 * 15 14 13 38 38 H 1.09005 * 109.47089 * 179.97438 * 15 14 13 39 39 H 1.09002 * 109.47106 * 299.99750 * 15 14 13 40 40 H 1.09000 * 109.47156 * 59.99794 * 16 14 13 41 41 H 1.08997 * 109.47359 * 180.02562 * 16 14 13 42 42 H 1.09007 * 109.47356 * 300.00069 * 16 14 13 43 43 H 1.09000 * 109.46966 * 300.00313 * 17 14 13 44 44 H 1.09002 * 109.46807 * 60.00291 * 17 14 13 45 45 H 0.96996 * 120.00083 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6250 0.6531 -0.0006 5 6 3.5823 -0.7116 -0.0015 6 6 4.7414 -1.6101 -0.0029 7 8 5.8680 -1.1499 -0.0038 8 7 4.5589 -2.9455 -0.0032 9 7 5.6663 -3.8038 -0.0104 10 6 5.4837 -5.1391 -0.0164 11 8 6.4448 -5.8839 -0.0222 12 7 4.2360 -5.6488 -0.0160 13 6 4.0377 -7.1002 -0.0219 14 6 2.5395 -7.4103 -0.0194 15 6 1.8971 -6.8129 1.2341 16 6 1.8907 -6.8018 -1.2643 17 6 2.3323 -8.9262 -0.0263 18 6 0.8566 -9.2315 -0.0232 19 1 0.1383 -8.4250 -0.0174 20 6 0.4234 -10.5405 -0.0289 21 7 1.2981 -11.5225 -0.0364 22 14 -1.4058 -10.9190 -0.0257 23 1 -2.1743 -9.6483 -0.0163 24 1 -1.7521 -11.6985 -1.2413 25 1 -1.7454 -11.7111 1.1836 26 8 2.2869 -1.0888 -0.0064 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.9612 2.1260 0.0004 31 1 4.5113 1.2704 -0.0004 32 1 3.6610 -3.3123 -0.0029 33 1 6.5642 -3.4369 -0.0112 34 1 3.4694 -5.0546 -0.0117 35 1 4.4957 -7.5259 -0.9148 36 1 4.4995 -7.5337 0.8651 37 1 2.0447 -5.7330 1.2385 38 1 0.8296 -7.0334 1.2357 39 1 2.3593 -7.2464 2.1210 40 1 2.3483 -7.2273 -2.1574 41 1 0.8233 -7.0222 -1.2623 42 1 2.0383 -5.7217 -1.2599 43 1 2.7899 -9.3514 -0.9196 44 1 2.7946 -9.3600 0.8604 45 1 0.9934 -12.4434 -0.0408 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807593811.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:32 Heat of formation + Delta-G solvation = -48.535353 kcal Electronic energy + Delta-G solvation = -27214.185129 eV Core-core repulsion = 23233.852885 eV Total energy + Delta-G solvation = -3980.332244 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.76401 -41.77053 -40.44176 -38.78769 -37.07065 -35.25149 -34.34526 -33.88191 -33.21085 -32.02187 -29.08428 -28.14399 -27.95753 -27.57463 -24.96300 -23.98434 -22.72750 -22.32876 -21.63636 -20.83176 -19.56137 -19.47034 -18.35475 -17.94512 -17.64507 -16.97682 -16.79905 -16.48086 -16.28099 -15.95721 -15.74567 -15.51718 -15.25958 -14.73652 -14.37679 -14.24240 -14.02646 -13.98275 -13.92758 -13.90745 -13.69543 -12.92621 -12.76221 -12.75221 -12.68767 -12.56041 -12.33512 -12.23315 -12.07565 -11.94177 -11.66837 -11.54375 -11.06823 -11.00558 -10.84149 -10.49975 -10.36917 -9.75742 -9.38468 -8.11897 -6.19291 -0.13241 0.50844 1.28928 1.43643 1.45072 1.56158 1.58885 1.75401 1.84553 2.00600 2.46409 3.21739 3.23292 3.69977 3.88294 3.92415 3.93654 4.08688 4.21216 4.53195 4.58408 4.65866 4.71993 4.73470 4.74044 4.77626 4.88491 4.95453 5.05239 5.13502 5.13679 5.17126 5.28293 5.33800 5.45262 5.47378 5.52884 5.54185 5.59211 5.80203 5.81992 5.92433 6.09750 6.32132 6.38527 6.95425 6.97050 7.23336 7.48584 9.00849 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012958 B = 0.002911 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.377898 B = 9617.034952 C =11575.748520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.037 3.963 3 C -0.231 4.231 4 C -0.101 4.101 5 C -0.110 4.110 6 C 0.613 3.387 7 O -0.546 6.546 8 N -0.508 5.508 9 N -0.525 5.525 10 C 0.714 3.286 11 O -0.609 6.609 12 N -0.719 5.719 13 C 0.156 3.844 14 C -0.064 4.064 15 C -0.123 4.123 16 C -0.123 4.123 17 C 0.039 3.961 18 C -0.510 4.510 19 H 0.075 0.925 20 C -0.006 4.006 21 N -0.939 5.939 22 Si 0.957 3.043 23 H -0.254 1.254 24 H -0.286 1.286 25 H -0.287 1.287 26 O -0.171 6.171 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.116 0.884 30 H 0.186 0.814 31 H 0.168 0.832 32 H 0.435 0.565 33 H 0.444 0.556 34 H 0.404 0.596 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.059 0.941 42 H 0.066 0.934 43 H -0.012 1.012 44 H -0.012 1.012 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.764 28.787 0.100 29.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.016 4.016 3 C -0.250 4.250 4 C -0.122 4.122 5 C -0.163 4.163 6 C 0.401 3.599 7 O -0.425 6.425 8 N -0.259 5.259 9 N -0.282 5.282 10 C 0.413 3.587 11 O -0.486 6.486 12 N -0.376 5.376 13 C 0.031 3.969 14 C -0.065 4.065 15 C -0.180 4.180 16 C -0.180 4.180 17 C 0.001 3.999 18 C -0.548 4.548 19 H 0.093 0.907 20 C -0.202 4.202 21 N -0.581 5.581 22 Si 0.783 3.217 23 H -0.178 1.178 24 H -0.213 1.213 25 H -0.213 1.213 26 O -0.067 6.067 27 H 0.120 0.880 28 H 0.105 0.895 29 H 0.134 0.866 30 H 0.203 0.797 31 H 0.185 0.815 32 H 0.279 0.721 33 H 0.290 0.710 34 H 0.242 0.758 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.006 0.994 44 H 0.006 0.994 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.491 27.921 0.096 28.032 hybrid contribution -0.613 -0.738 -0.012 0.960 sum -3.104 27.183 0.084 27.360 Atomic orbital electron populations 1.20715 0.81714 1.06100 1.05462 1.23691 0.95748 0.83403 0.98759 1.21971 0.91123 1.01411 1.10459 1.22241 1.00129 0.92198 0.97591 1.21153 0.81596 0.94063 1.19464 1.16598 0.87155 0.79500 0.76631 1.90904 1.23142 1.75849 1.52575 1.44675 1.03206 1.02210 1.75847 1.44426 1.03226 0.99424 1.81094 1.15749 0.84446 0.80406 0.78122 1.91020 1.41343 1.55973 1.60256 1.45078 1.05448 1.08692 1.78425 1.21256 0.96902 0.77758 1.00946 1.20727 0.91464 0.97068 0.97213 1.21712 1.01282 0.99301 0.95716 1.21713 1.01258 0.99252 0.95791 1.18979 0.96076 0.90210 0.94604 1.21623 0.92865 0.91905 1.48430 0.90694 1.25937 1.01946 0.96769 0.95592 1.70125 1.35659 0.99522 1.52749 0.85512 0.80450 0.78652 0.77117 1.17772 1.21270 1.21282 1.83998 1.15342 1.36072 1.71323 0.87973 0.89478 0.86554 0.79716 0.81455 0.72116 0.70996 0.75788 0.92921 0.92923 0.91476 0.92203 0.94242 0.94246 0.92205 0.91482 0.99361 0.99368 0.93252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.28 10.41 71.24 0.74 0.46 16 2 C 0.04 0.39 7.31 24.97 0.18 0.57 16 3 C -0.23 -2.39 10.77 22.07 0.24 -2.16 16 4 C -0.10 -1.51 10.62 22.39 0.24 -1.27 16 5 C -0.11 -1.96 7.13 24.07 0.17 -1.79 16 6 C 0.61 13.08 7.90 86.44 0.68 13.76 16 7 O -0.55 -14.69 16.70 -4.33 -0.07 -14.77 16 8 N -0.51 -9.84 6.25 -176.40 -1.10 -10.94 16 9 N -0.53 -12.60 6.26 -184.75 -1.16 -13.75 16 10 C 0.71 21.18 8.68 179.06 1.55 22.73 16 11 O -0.61 -23.47 17.18 -4.01 -0.07 -23.54 16 12 N -0.72 -19.14 4.92 -478.54 -2.36 -21.50 16 13 C 0.16 5.29 4.56 86.38 0.39 5.68 16 14 C -0.06 -2.28 0.54 -52.18 -0.03 -2.31 16 15 C -0.12 -3.82 8.05 71.98 0.58 -3.24 16 16 C -0.12 -3.82 8.05 71.98 0.58 -3.24 16 17 C 0.04 1.90 4.04 29.85 0.12 2.03 16 18 C -0.51 -26.32 7.65 25.60 0.20 -26.12 16 19 H 0.08 3.58 5.68 -2.91 -0.02 3.56 16 20 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 21 N -0.94 -56.17 13.29 21.45 0.28 -55.88 16 22 Si 0.96 42.44 29.54 68.60 2.03 44.47 16 23 H -0.25 -10.38 7.11 99.48 0.71 -9.67 16 24 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 26 O -0.17 -2.57 10.40 -5.04 -0.05 -2.62 16 27 H 0.10 0.16 8.14 -2.38 -0.02 0.14 16 28 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.12 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.19 0.81 8.06 -2.91 -0.02 0.79 16 31 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 32 H 0.43 6.56 6.46 -213.31 -1.38 5.18 16 33 H 0.44 10.73 8.10 -213.31 -1.73 9.01 16 34 H 0.40 8.23 4.08 -92.71 -0.38 7.85 16 35 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.07 1.52 6.86 -2.39 -0.02 1.51 16 38 H 0.06 1.99 6.62 -2.38 -0.02 1.97 16 39 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.06 1.99 6.62 -2.39 -0.02 1.97 16 42 H 0.07 1.52 6.86 -2.38 -0.02 1.50 16 43 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 44 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 45 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -73.22 376.02 1.18 -72.05 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: -2.44 Total: 21.24 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 6.11 Total: 5.25 kcal Atomic # 7 Polarization: -97.74 SS G_CDS: -4.33 Total: -102.08 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -0.19 Total: -40.93 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -73.22 1.18 -72.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807593811.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.511 kcal (2) G-P(sol) polarization free energy of solvation -73.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds