Wall clock time and date at job start Tue Mar 31 2020 13:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35976 * 117.00351 * 2 1 4 4 C 1.38721 * 119.99836 * 359.97438 * 3 2 1 5 5 C 1.38113 * 120.00004 * 180.02562 * 4 3 2 6 6 C 1.38715 * 120.00023 * 359.97438 * 5 4 3 7 7 O 1.35986 * 119.99715 * 180.02562 * 6 5 4 8 8 C 1.42893 * 117.00374 * 359.97438 * 7 6 5 9 9 C 1.38672 * 120.00080 * 0.02562 * 6 5 4 10 10 C 1.50701 * 120.00043 * 180.02562 * 9 6 5 11 11 H 1.09002 * 109.47060 * 324.99711 * 10 9 6 12 12 O 1.42903 * 109.46878 * 204.99581 * 10 9 6 13 13 C 1.53002 * 109.47419 * 84.99792 * 10 9 6 14 14 N 1.46494 * 109.47345 * 185.00232 * 13 10 9 15 15 C 1.34772 * 120.00365 * 179.97438 * 14 13 10 16 16 O 1.21284 * 119.99636 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00364 * 179.97438 * 15 14 13 18 18 C 1.53002 * 109.47039 * 179.97438 * 17 15 14 19 19 C 1.50704 * 109.46934 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00166 * 0.02562 * 19 18 17 21 21 C 1.37875 * 119.99876 * 179.97438 * 19 18 17 22 22 N 1.31519 * 120.00278 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00024 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47387 * 89.99947 * 23 21 19 25 25 H 1.48497 * 109.46984 * 210.00184 * 23 21 19 26 26 H 1.48501 * 109.46952 * 329.99921 * 23 21 19 27 27 C 1.38158 * 120.00079 * 0.26979 * 9 6 5 28 28 H 1.08997 * 109.47276 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47542 * 300.00255 * 1 2 3 30 30 H 1.09004 * 109.46929 * 60.00216 * 1 2 3 31 31 H 1.08002 * 119.99932 * 359.97438 * 4 3 2 32 32 H 1.08003 * 119.99465 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.46805 * 299.99964 * 8 7 6 34 34 H 1.09004 * 109.46922 * 59.99587 * 8 7 6 35 35 H 1.08999 * 109.47383 * 179.97438 * 8 7 6 36 36 H 0.96700 * 114.00234 * 299.99722 * 12 10 9 37 37 H 1.09008 * 109.46873 * 305.00091 * 13 10 9 38 38 H 1.08997 * 109.47047 * 64.99780 * 13 10 9 39 39 H 0.97008 * 119.99803 * 359.97438 * 14 13 10 40 40 H 1.08995 * 109.47322 * 299.99728 * 17 15 14 41 41 H 1.08997 * 109.47214 * 60.00023 * 17 15 14 42 42 H 1.08999 * 109.47369 * 299.99899 * 18 17 15 43 43 H 1.08997 * 109.46991 * 60.00561 * 18 17 15 44 44 H 0.96994 * 119.99923 * 179.97438 * 22 21 19 45 45 H 1.07995 * 120.00071 * 179.70152 * 27 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2909 2.3750 -0.0005 5 6 1.9179 3.6055 -0.0011 6 6 3.3032 3.6781 -0.0005 7 8 3.9205 4.8897 -0.0005 8 6 3.0807 6.0458 -0.0017 9 6 4.0584 2.5151 0.0000 10 6 5.5634 2.5939 0.0012 11 1 5.8826 3.4536 -0.5880 12 8 6.1033 1.3994 -0.5678 13 6 6.0651 2.7461 1.4386 14 7 7.5168 2.9425 1.4309 15 6 8.1815 3.1012 2.5925 16 8 7.5777 3.0819 3.6442 17 6 9.6749 3.3026 2.5847 18 6 10.1763 3.4562 4.0220 19 6 11.6699 3.6570 4.0142 20 1 12.2076 3.6738 3.0778 21 6 12.3498 3.8203 5.2025 22 7 11.6949 3.8003 6.3429 23 14 14.2010 4.0698 5.1929 24 1 14.5045 5.5209 5.1070 25 1 14.7817 3.5157 6.4422 26 1 14.7885 3.3712 4.0216 27 6 3.4312 1.2841 -0.0056 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2123 2.3185 -0.0014 32 1 1.3297 4.5113 -0.0019 33 1 2.4521 6.0374 -0.8922 34 1 2.4506 6.0381 0.8878 35 1 3.6985 6.9438 -0.0011 36 1 5.8595 0.5927 -0.0935 37 1 5.5843 3.6078 1.9018 38 1 5.8230 1.8470 2.0050 39 1 7.9996 2.9583 0.5897 40 1 10.1554 2.4405 2.1221 41 1 9.9174 4.2013 2.0177 42 1 9.6959 4.3185 4.4843 43 1 9.9339 2.5576 4.5894 44 1 12.1733 3.9148 7.1789 45 1 4.0194 0.3784 -0.0101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812463932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:53 Heat of formation + Delta-G solvation = -173.451586 kcal Electronic energy + Delta-G solvation = -26734.479409 eV Core-core repulsion = 22716.437639 eV Total energy + Delta-G solvation = -4018.041770 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.73133 -40.68079 -39.95078 -38.85147 -36.96181 -35.60701 -35.28757 -33.09649 -32.64767 -31.08364 -29.47405 -28.26513 -27.77139 -27.42718 -24.90593 -23.33326 -23.03229 -22.26370 -21.13826 -19.54582 -18.83630 -18.57204 -18.01749 -17.85081 -17.31202 -16.87311 -16.76932 -16.50769 -16.43806 -16.22385 -15.86605 -15.67740 -15.50921 -14.99999 -14.63437 -14.49022 -14.17106 -14.06610 -13.73773 -13.64584 -13.36371 -13.21742 -13.12471 -12.79352 -12.73542 -12.48287 -12.46358 -12.26685 -11.90415 -11.87843 -11.63049 -11.37176 -11.32505 -11.29248 -10.72580 -10.55977 -10.09948 -10.01478 -8.75664 -8.16804 -6.30862 0.10049 0.39361 1.42887 1.45976 1.57004 1.72243 2.16885 2.31279 2.42730 2.46336 2.62190 3.15894 3.32099 3.55164 3.70704 3.78675 4.02193 4.05493 4.15086 4.16512 4.24622 4.38170 4.40505 4.40993 4.47005 4.52858 4.56314 4.63603 4.70678 4.72821 4.76623 4.79464 5.08860 5.13272 5.18836 5.26491 5.41692 5.48935 5.52635 5.64657 5.86754 6.19096 6.28604 6.47419 6.58557 6.65290 6.87535 7.34892 7.39348 8.95950 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.021151 B = 0.002172 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.520116 B =12886.726755 C =13400.980473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.082 3.918 4 C -0.164 4.164 5 C -0.168 4.168 6 C 0.091 3.909 7 O -0.333 6.333 8 C 0.019 3.981 9 C -0.124 4.124 10 C 0.167 3.833 11 H 0.122 0.878 12 O -0.555 6.555 13 C 0.101 3.899 14 N -0.712 5.712 15 C 0.511 3.489 16 O -0.591 6.591 17 C -0.119 4.119 18 C 0.042 3.958 19 C -0.543 4.543 20 H 0.076 0.924 21 C -0.009 4.009 22 N -0.938 5.938 23 Si 0.976 3.024 24 H -0.271 1.271 25 H -0.286 1.286 26 H -0.255 1.255 27 C -0.114 4.114 28 H 0.116 0.884 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.157 0.843 32 H 0.157 0.843 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.111 0.889 36 H 0.388 0.612 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.417 0.583 40 H 0.105 0.895 41 H 0.105 0.895 42 H -0.018 1.018 43 H -0.018 1.018 44 H 0.263 0.737 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.269 -2.239 -20.783 33.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.037 3.963 4 C -0.183 4.183 5 C -0.186 4.186 6 C 0.046 3.954 7 O -0.247 6.247 8 C -0.076 4.076 9 C -0.126 4.126 10 C 0.107 3.893 11 H 0.139 0.861 12 O -0.363 6.363 13 C -0.024 4.024 14 N -0.366 5.366 15 C 0.300 3.700 16 O -0.471 6.471 17 C -0.159 4.159 18 C 0.005 3.995 19 C -0.580 4.580 20 H 0.094 0.906 21 C -0.206 4.206 22 N -0.578 5.578 23 Si 0.799 3.201 24 H -0.197 1.197 25 H -0.212 1.212 26 H -0.179 1.179 27 C -0.132 4.132 28 H 0.134 0.866 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.174 0.826 32 H 0.174 0.826 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.130 0.870 36 H 0.238 0.762 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.255 0.745 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.000 1.000 43 H 0.000 1.000 44 H 0.071 0.929 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -26.163 -1.973 -20.299 33.173 hybrid contribution 0.082 0.050 0.798 0.804 sum -26.081 -1.922 -19.501 32.622 Atomic orbital electron populations 1.23331 0.76548 1.05543 1.02200 1.86063 1.23326 1.26420 1.89181 1.18959 0.92185 0.85085 1.00061 1.21369 1.01387 0.91071 1.04446 1.21310 0.92638 0.99659 1.05031 1.18837 0.91566 0.85324 0.99694 1.86075 1.36930 1.12788 1.88905 1.23324 0.96318 0.85644 1.02287 1.19512 0.95896 0.91067 1.06088 1.20565 0.87359 0.89459 0.91874 0.86079 1.86606 1.75843 1.16634 1.57203 1.21924 0.81048 1.01703 0.97707 1.45782 1.07949 1.73917 1.08910 1.21358 0.91083 0.74437 0.83145 1.90651 1.70982 1.52115 1.33369 1.21637 0.89205 1.04577 1.00448 1.18691 0.94934 0.94642 0.91284 1.21725 0.93346 1.49435 0.93541 0.90556 1.26168 1.04468 0.94880 0.95110 1.70184 1.38180 1.51081 0.98376 0.85292 0.78197 0.78644 0.77925 1.19670 1.21171 1.17910 1.20108 0.92192 0.97501 1.03441 0.86567 0.91869 0.91503 0.82560 0.82557 0.91047 0.91938 0.87030 0.76156 0.92137 0.92092 0.74546 0.87718 0.87720 0.99968 0.99960 0.92868 0.83478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.34 -5.73 10.50 -93.28 -0.98 -6.71 16 3 C 0.08 1.50 6.69 22.49 0.15 1.65 16 4 C -0.16 -2.42 9.03 22.36 0.20 -2.22 16 5 C -0.17 -2.59 9.03 22.35 0.20 -2.39 16 6 C 0.09 1.81 6.66 22.49 0.15 1.96 16 7 O -0.33 -6.56 9.63 -93.39 -0.90 -7.46 16 8 C 0.02 0.22 9.81 113.37 1.11 1.33 16 9 C -0.12 -2.57 5.08 -19.78 -0.10 -2.67 16 10 C 0.17 3.52 2.96 29.85 0.09 3.61 16 11 H 0.12 2.56 7.69 -2.39 -0.02 2.54 16 12 O -0.56 -10.87 12.93 -148.98 -1.93 -12.79 16 13 C 0.10 2.73 5.29 86.38 0.46 3.18 16 14 N -0.71 -21.03 5.50 -463.07 -2.55 -23.58 16 15 C 0.51 20.88 7.83 87.66 0.69 21.57 16 16 O -0.59 -30.36 15.98 -3.04 -0.05 -30.41 16 17 C -0.12 -4.98 5.64 29.85 0.17 -4.81 16 18 C 0.04 2.42 4.26 29.85 0.13 2.55 16 19 C -0.54 -31.57 9.11 25.60 0.23 -31.34 16 20 H 0.08 4.04 7.74 -2.91 -0.02 4.01 16 21 C -0.01 -0.54 5.46 84.65 0.46 -0.07 16 22 N -0.94 -60.54 13.29 21.45 0.28 -60.26 16 23 Si 0.98 45.06 29.54 68.60 2.03 47.08 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 26 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 27 C -0.11 -2.20 9.24 22.36 0.21 -1.99 16 28 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.42 7.66 -2.39 -0.02 0.41 16 30 H 0.07 0.39 7.66 -2.38 -0.02 0.37 16 31 H 0.16 1.38 6.29 -2.91 -0.02 1.36 16 32 H 0.16 1.54 6.29 -2.91 -0.02 1.53 16 33 H 0.07 0.57 7.66 -2.38 -0.02 0.55 16 34 H 0.06 0.63 7.66 -2.38 -0.02 0.61 16 35 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.39 5.61 7.33 -74.06 -0.54 5.07 16 37 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.42 9.75 8.47 -92.70 -0.79 8.96 16 40 H 0.10 3.87 8.14 -2.39 -0.02 3.85 16 41 H 0.10 3.85 8.14 -2.39 -0.02 3.83 16 42 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 43 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 44 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 45 H 0.15 2.39 6.40 -2.91 -0.02 2.37 16 Total: -1.00 -84.02 378.80 0.87 -83.15 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -0.30 Total: 19.36 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 5.26 Total: -8.39 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -2.26 Total: -83.84 kcal Atomic # 8 Polarization: -53.52 SS G_CDS: -3.85 Total: -57.38 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -84.02 0.87 -83.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812463932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.298 kcal (2) G-P(sol) polarization free energy of solvation -84.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds