Wall clock time and date at job start Tue Mar 31 2020 13:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35981 * 116.99673 * 2 1 4 4 C 1.38728 * 120.00080 * 0.25621 * 3 2 1 5 5 C 1.38108 * 119.99946 * 180.25510 * 4 3 2 6 6 C 1.38723 * 119.99987 * 359.48691 * 5 4 3 7 7 O 1.35981 * 120.00001 * 180.23565 * 6 5 4 8 8 C 1.42899 * 117.00037 * 0.02562 * 7 6 5 9 9 C 1.38675 * 120.00072 * 0.25570 * 6 5 4 10 10 C 1.50701 * 120.00080 * 180.02562 * 9 6 5 11 11 H 1.08993 * 109.47021 * 35.00312 * 10 9 6 12 12 O 1.42893 * 109.47072 * 155.00398 * 10 9 6 13 13 C 1.52998 * 109.47106 * 275.00023 * 10 9 6 14 14 N 1.46503 * 109.46992 * 179.97438 * 13 10 9 15 15 C 1.34783 * 119.99986 * 179.97438 * 14 13 10 16 16 O 1.21283 * 119.99620 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00131 * 180.02562 * 15 14 13 18 18 C 1.52998 * 109.47137 * 180.02562 * 17 15 14 19 19 C 1.50701 * 109.46728 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00544 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99690 * 180.02562 * 19 18 17 22 22 N 1.31521 * 120.00154 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00039 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46956 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46841 * 119.99950 * 23 21 19 26 26 H 1.48493 * 109.47078 * 239.99981 * 23 21 19 27 27 C 1.38157 * 119.99825 * 0.02562 * 9 6 5 28 28 H 1.09002 * 109.46512 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46965 * 299.99670 * 1 2 3 30 30 H 1.08994 * 109.47111 * 60.00160 * 1 2 3 31 31 H 1.07998 * 119.99677 * 0.02562 * 4 3 2 32 32 H 1.08002 * 120.00212 * 179.77140 * 5 4 3 33 33 H 1.08996 * 109.47459 * 180.02562 * 8 7 6 34 34 H 1.09008 * 109.47331 * 300.00124 * 8 7 6 35 35 H 1.09001 * 109.47229 * 59.99831 * 8 7 6 36 36 H 0.96702 * 114.00442 * 60.00072 * 12 10 9 37 37 H 1.08993 * 109.47416 * 300.00046 * 13 10 9 38 38 H 1.09001 * 109.46875 * 60.00476 * 13 10 9 39 39 H 0.96995 * 119.99789 * 0.02562 * 14 13 10 40 40 H 1.08999 * 109.47188 * 300.01139 * 17 15 14 41 41 H 1.09005 * 109.46498 * 60.00340 * 17 15 14 42 42 H 1.08993 * 109.47416 * 300.00391 * 18 17 15 43 43 H 1.09001 * 109.46875 * 60.00821 * 18 17 15 44 44 H 0.97000 * 119.99984 * 180.02562 * 22 21 19 45 45 H 1.08001 * 119.99588 * 180.02562 * 27 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2907 2.3751 0.0054 5 6 1.9176 3.6057 0.0000 6 6 3.3029 3.6783 0.0001 7 8 3.9202 4.8900 -0.0003 8 6 3.0802 6.0460 -0.0002 9 6 4.0583 2.5154 0.0001 10 6 5.5632 2.5943 0.0007 11 1 5.8817 3.4538 0.5905 12 8 6.1026 1.3998 0.5699 13 6 6.0665 2.7469 -1.4360 14 7 7.5295 2.8243 -1.4353 15 6 8.1976 2.9611 -2.5979 16 8 7.5877 3.0206 -3.6444 17 6 9.7025 3.0401 -2.5972 18 6 10.2058 3.1928 -4.0340 19 6 11.7108 3.2712 -4.0333 20 1 12.2539 3.2179 -3.1014 21 6 12.3942 3.4121 -5.2225 22 7 11.7328 3.4785 -6.3573 23 14 14.2597 3.5099 -5.2217 24 1 14.7599 3.4124 -3.8269 25 1 14.8144 2.3911 -6.0253 26 1 14.6877 4.8034 -5.8123 27 6 3.4311 1.2843 -0.0004 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2122 2.3184 0.0100 32 1 1.3294 4.5114 0.0005 33 1 3.6979 6.9440 -0.0010 34 1 2.4505 6.0378 -0.8900 35 1 2.4512 6.0380 0.8900 36 1 5.8594 0.5932 0.0952 37 1 5.7480 1.8875 -2.0258 38 1 5.6551 3.6582 -1.8702 39 1 8.0172 2.7763 -0.5983 40 1 10.0210 3.8997 -2.0076 41 1 10.1139 2.1290 -2.1627 42 1 9.8873 2.3334 -4.6239 43 1 9.7944 4.1041 -4.4681 44 1 12.2136 3.5773 -7.1939 45 1 4.0194 0.3786 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812463935.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:56 Heat of formation + Delta-G solvation = -173.443290 kcal Electronic energy + Delta-G solvation = -26731.648244 eV Core-core repulsion = 22713.606834 eV Total energy + Delta-G solvation = -4018.041410 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.73083 -40.68146 -39.95033 -38.85329 -36.96406 -35.60379 -35.26790 -33.09793 -32.65367 -31.08484 -29.47715 -28.26446 -27.77139 -27.43211 -24.90276 -23.32712 -23.03061 -22.25484 -21.13853 -19.54637 -18.83794 -18.57173 -18.02081 -17.85142 -17.31867 -16.86697 -16.76334 -16.50712 -16.43683 -16.20329 -15.88804 -15.68702 -15.50586 -15.00044 -14.62296 -14.50543 -14.17224 -14.06952 -13.73634 -13.64221 -13.36061 -13.21141 -13.12909 -12.82496 -12.72940 -12.48395 -12.43593 -12.25960 -11.91213 -11.87875 -11.63044 -11.37422 -11.31789 -11.27250 -10.73005 -10.57015 -10.09845 -10.01380 -8.75650 -8.17054 -6.30980 0.10040 0.39356 1.42939 1.44603 1.58111 1.72282 2.16585 2.31386 2.42706 2.46218 2.62394 3.15767 3.32200 3.55485 3.70778 3.79014 4.01610 4.06228 4.15432 4.16504 4.24585 4.38145 4.40602 4.40990 4.46980 4.52971 4.56480 4.63937 4.70842 4.72787 4.76675 4.79571 5.09130 5.13298 5.18785 5.26475 5.41729 5.48950 5.52772 5.64640 5.86785 6.19074 6.28593 6.47396 6.58565 6.65479 6.87671 7.35095 7.39279 8.95909 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.020835 B = 0.002174 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.590523 B =12874.676760 C =13411.656189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.082 3.918 4 C -0.164 4.164 5 C -0.168 4.168 6 C 0.091 3.909 7 O -0.333 6.333 8 C 0.018 3.982 9 C -0.124 4.124 10 C 0.167 3.833 11 H 0.121 0.879 12 O -0.555 6.555 13 C 0.100 3.900 14 N -0.712 5.712 15 C 0.511 3.489 16 O -0.591 6.591 17 C -0.119 4.119 18 C 0.042 3.958 19 C -0.541 4.541 20 H 0.076 0.924 21 C -0.009 4.009 22 N -0.938 5.938 23 Si 0.976 3.024 24 H -0.253 1.253 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.114 4.114 28 H 0.116 0.884 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.157 0.843 32 H 0.157 0.843 33 H 0.112 0.888 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.388 0.612 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.418 0.582 40 H 0.104 0.896 41 H 0.105 0.895 42 H -0.018 1.018 43 H -0.018 1.018 44 H 0.263 0.737 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.365 -1.562 20.823 33.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.037 3.963 4 C -0.183 4.183 5 C -0.186 4.186 6 C 0.046 3.954 7 O -0.247 6.247 8 C -0.076 4.076 9 C -0.126 4.126 10 C 0.108 3.892 11 H 0.139 0.861 12 O -0.362 6.362 13 C -0.024 4.024 14 N -0.365 5.365 15 C 0.300 3.700 16 O -0.471 6.471 17 C -0.159 4.159 18 C 0.004 3.996 19 C -0.579 4.579 20 H 0.094 0.906 21 C -0.207 4.207 22 N -0.578 5.578 23 Si 0.800 3.200 24 H -0.176 1.176 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.133 4.133 28 H 0.134 0.866 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.174 0.826 32 H 0.175 0.825 33 H 0.130 0.870 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.238 0.762 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.255 0.745 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.001 0.999 43 H 0.000 1.000 44 H 0.071 0.929 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -26.264 -1.231 20.350 33.248 hybrid contribution 0.087 -0.018 -0.816 0.821 sum -26.177 -1.248 19.534 32.686 Atomic orbital electron populations 1.23332 0.76547 1.05541 1.02202 1.86066 1.23330 1.26422 1.89184 1.18962 0.92184 0.85088 1.00069 1.21368 1.01385 0.91068 1.04441 1.21311 0.92638 0.99655 1.05023 1.18838 0.91563 0.85322 0.99685 1.86074 1.36934 1.12790 1.88907 1.23325 0.96319 0.85641 1.02294 1.19512 0.95908 0.91061 1.06082 1.20562 0.87357 0.89452 0.91865 0.86114 1.86600 1.75877 1.16637 1.57114 1.21915 0.80748 1.02057 0.97721 1.45772 1.06898 1.74700 1.09176 1.21361 0.91352 0.74237 0.83076 1.90651 1.71198 1.51529 1.33739 1.21637 0.88967 1.04819 1.00437 1.18694 0.94957 0.94644 0.91286 1.21755 0.92458 1.49955 0.93767 0.90550 1.26171 1.04607 0.94735 0.95142 1.70193 1.37882 1.51158 0.98609 0.85243 0.78255 0.77548 0.79000 1.17603 1.20609 1.20608 1.20106 0.92197 0.97501 1.03446 0.86575 0.91491 0.91870 0.82558 0.82542 0.87015 0.91920 0.91057 0.76163 0.92183 0.92068 0.74506 0.87741 0.87698 0.99949 0.99958 0.92870 0.83512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.27 16 2 O -0.34 -5.76 10.50 -93.34 -0.98 -6.74 16 3 C 0.08 1.50 6.69 22.49 0.15 1.65 16 4 C -0.16 -2.42 9.03 22.36 0.20 -2.22 16 5 C -0.17 -2.58 9.03 22.35 0.20 -2.38 16 6 C 0.09 1.81 6.66 22.49 0.15 1.96 16 7 O -0.33 -6.53 9.63 -93.34 -0.90 -7.43 16 8 C 0.02 0.21 9.81 113.37 1.11 1.32 16 9 C -0.12 -2.57 5.08 -19.78 -0.10 -2.67 16 10 C 0.17 3.53 3.01 29.85 0.09 3.62 16 11 H 0.12 2.56 7.69 -2.39 -0.02 2.54 16 12 O -0.55 -10.79 12.73 -148.98 -1.90 -12.69 16 13 C 0.10 2.71 5.32 86.38 0.46 3.17 16 14 N -0.71 -21.00 5.45 -463.06 -2.52 -23.52 16 15 C 0.51 20.86 7.83 87.65 0.69 21.55 16 16 O -0.59 -30.35 15.98 -3.04 -0.05 -30.40 16 17 C -0.12 -4.98 5.64 29.85 0.17 -4.81 16 18 C 0.04 2.40 4.26 29.85 0.13 2.53 16 19 C -0.54 -31.50 9.11 25.60 0.23 -31.27 16 20 H 0.08 4.05 7.74 -2.91 -0.02 4.03 16 21 C -0.01 -0.56 5.46 84.65 0.46 -0.09 16 22 N -0.94 -60.54 13.29 21.45 0.28 -60.25 16 23 Si 0.98 45.09 29.54 68.60 2.03 47.11 16 24 H -0.25 -10.77 7.11 99.48 0.71 -10.06 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 26 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 27 C -0.11 -2.21 9.24 22.35 0.21 -2.00 16 28 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.39 7.65 -2.39 -0.02 0.37 16 30 H 0.06 0.43 7.67 -2.39 -0.02 0.41 16 31 H 0.16 1.38 6.29 -2.91 -0.02 1.36 16 32 H 0.16 1.53 6.29 -2.91 -0.02 1.51 16 33 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 0.62 7.66 -2.38 -0.02 0.60 16 35 H 0.07 0.56 7.66 -2.39 -0.02 0.54 16 36 H 0.39 5.62 7.32 -74.06 -0.54 5.08 16 37 H 0.06 1.72 8.14 -2.39 -0.02 1.71 16 38 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.42 9.78 8.35 -92.71 -0.77 9.01 16 40 H 0.10 3.85 8.14 -2.39 -0.02 3.83 16 41 H 0.10 3.87 8.14 -2.38 -0.02 3.85 16 42 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 43 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 44 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 45 H 0.15 2.40 6.40 -2.91 -0.02 2.38 16 Total: -1.00 -83.94 378.50 0.93 -83.01 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -0.29 Total: 19.29 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 5.26 Total: -8.38 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -2.24 Total: -83.77 kcal Atomic # 8 Polarization: -53.43 SS G_CDS: -3.82 Total: -57.26 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -83.94 0.93 -83.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812463935.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.435 kcal (2) G-P(sol) polarization free energy of solvation -83.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds