Wall clock time and date at job start Tue Mar 31 2020 14:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30833 * 125.83143 * 2 1 4 4 N 1.40065 * 108.36730 * 180.26052 * 3 2 1 5 5 C 1.46504 * 126.05289 * 179.71996 * 4 3 2 6 6 C 1.35813 * 107.89455 * 359.71110 * 4 3 2 7 7 C 1.50700 * 126.21799 * 179.97438 * 6 4 3 8 8 C 1.35750 * 107.56108 * 0.02562 * 6 4 3 9 9 N 1.40771 * 126.07827 * 179.97438 * 8 6 4 10 10 C 1.34774 * 119.99719 * 121.70818 * 9 8 6 11 11 O 1.21300 * 120.00169 * 355.03367 * 10 9 8 12 12 C 1.50698 * 119.99559 * 175.03582 * 10 9 8 13 13 H 1.09003 * 109.47234 * 304.99849 * 12 10 9 14 14 C 1.53006 * 109.47601 * 64.99856 * 12 10 9 15 15 O 1.45203 * 109.46996 * 184.99640 * 12 10 9 16 16 C 1.34228 * 116.99832 * 149.99814 * 15 12 10 17 17 O 1.20829 * 120.00393 * 0.02562 * 16 15 12 18 18 C 1.50709 * 119.99746 * 180.02562 * 16 15 12 19 19 C 1.53002 * 109.46641 * 180.02562 * 18 16 15 20 20 C 1.50709 * 109.46641 * 180.02562 * 19 18 16 21 21 H 1.07994 * 120.00093 * 0.02562 * 20 19 18 22 22 C 1.37874 * 119.99601 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99719 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00484 * 359.97438 * 22 20 19 25 25 H 1.48493 * 109.47080 * 89.99940 * 24 22 20 26 26 H 1.48498 * 109.47176 * 210.00330 * 24 22 20 27 27 H 1.48507 * 109.46738 * 330.00006 * 24 22 20 28 28 H 1.09004 * 109.47201 * 287.95772 * 1 2 3 29 29 H 1.08991 * 109.47405 * 47.96063 * 1 2 3 30 30 H 1.09004 * 109.47257 * 167.96467 * 1 2 3 31 31 H 1.08998 * 109.46556 * 269.99473 * 5 4 3 32 32 H 1.09003 * 109.47073 * 29.99091 * 5 4 3 33 33 H 1.08995 * 109.47259 * 149.99501 * 5 4 3 34 34 H 1.09005 * 109.46870 * 270.02515 * 7 6 4 35 35 H 1.08997 * 109.47334 * 30.02398 * 7 6 4 36 36 H 1.08999 * 109.47042 * 150.02599 * 7 6 4 37 37 H 0.97000 * 119.99688 * 301.71098 * 9 8 6 38 38 H 1.09003 * 109.46832 * 59.99747 * 14 12 10 39 39 H 1.08993 * 109.47188 * 179.97438 * 14 12 10 40 40 H 1.08996 * 109.46639 * 300.00424 * 14 12 10 41 41 H 1.08999 * 109.47210 * 299.99566 * 18 16 15 42 42 H 1.08989 * 109.47242 * 60.00334 * 18 16 15 43 43 H 1.09000 * 109.47326 * 299.99729 * 19 18 16 44 44 H 1.08994 * 109.47616 * 60.00136 * 19 18 16 45 45 H 0.97000 * 119.99848 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2729 1.0607 0.0000 4 7 3.6090 0.6404 -0.0060 5 6 4.7869 1.5115 -0.0139 6 6 3.6192 -0.7177 -0.0032 7 6 4.8416 -1.5990 -0.0082 8 6 2.3281 -1.1370 0.0039 9 7 1.8911 -2.4752 0.0083 10 6 1.1036 -2.9235 1.0059 11 8 0.8451 -2.2015 1.9457 12 6 0.5443 -4.3219 0.9537 13 1 0.0019 -4.4617 0.0186 14 6 1.6899 -5.3329 1.0349 15 8 -0.3594 -4.5237 2.0722 16 6 -1.3749 -5.3819 1.8879 17 8 -1.5043 -5.9462 0.8273 18 6 -2.3539 -5.6417 3.0039 19 6 -3.4040 -6.6514 2.5363 20 6 -4.3833 -6.9107 3.6522 21 1 -4.2684 -6.4055 4.5997 22 6 -5.4264 -7.7921 3.4628 23 7 -6.2814 -8.0181 4.4363 24 14 -5.6264 -8.6644 1.8230 25 1 -4.8759 -9.9454 1.8491 26 1 -7.0656 -8.9386 1.5805 27 1 -5.0967 -7.8023 0.7360 28 1 -0.3634 0.3169 0.9776 29 1 -0.3634 0.6881 -0.7632 30 1 -0.3634 -1.0051 -0.2143 31 1 5.0737 1.7253 -1.0435 32 1 4.5524 2.4442 0.4992 33 1 5.6108 1.0130 0.4968 34 1 5.1308 -1.8133 -1.0371 35 1 5.6596 -1.0886 0.5003 36 1 4.6187 -2.5325 0.5085 37 1 2.1568 -3.0745 -0.7066 38 1 2.2322 -5.1931 1.9700 39 1 1.2852 -6.3442 0.9976 40 1 2.3682 -5.1813 0.1953 41 1 -1.8229 -6.0435 3.8669 42 1 -2.8445 -4.7088 3.2813 43 1 -3.9351 -6.2500 1.6733 44 1 -2.9130 -7.5843 2.2592 45 1 -7.0151 -8.6384 4.3032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812619079.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:43 Heat of formation + Delta-G solvation = -53.412004 kcal Electronic energy + Delta-G solvation = -27074.641384 eV Core-core repulsion = 23094.097672 eV Total energy + Delta-G solvation = -3980.543712 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.80533 -40.52513 -39.26999 -36.35069 -35.14422 -34.26363 -33.63210 -32.45954 -31.45993 -31.01448 -29.76622 -27.17482 -26.61362 -25.78322 -24.58670 -22.23936 -21.01406 -20.38130 -19.82141 -19.73438 -17.91088 -17.80001 -17.09186 -16.64359 -16.18563 -16.04156 -15.73314 -15.31940 -15.03072 -14.29424 -14.15250 -14.00607 -13.79496 -13.65301 -13.63196 -13.42696 -13.17663 -12.99041 -12.79653 -12.61263 -12.56558 -12.38494 -12.28066 -12.21030 -11.72875 -11.45489 -11.16563 -11.02331 -10.75403 -10.32105 -10.17526 -10.06460 -10.00753 -9.83098 -9.69994 -9.35457 -9.24787 -8.54750 -8.39328 -6.05863 -4.05756 1.38931 1.94706 2.17653 2.44128 2.57928 2.66962 3.33020 3.34536 3.41628 3.50147 4.12905 4.17118 4.38273 4.46803 4.54245 4.65603 4.67075 4.74388 4.80725 4.93863 4.98481 5.02843 5.07275 5.28587 5.31834 5.43789 5.45843 5.49899 5.52471 5.67380 5.75006 5.83351 6.01409 6.02529 6.03725 6.42692 6.49454 6.65130 6.72507 7.09904 7.23579 7.31398 7.39308 7.71378 7.98425 8.14399 8.48297 8.97004 9.55573 11.06731 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.028288 B = 0.002273 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.573500 B =12314.628893 C =12700.245078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.096 3.904 3 N -0.288 5.288 4 N -0.374 5.374 5 C 0.106 3.894 6 C 0.079 3.921 7 C -0.090 4.090 8 C -0.006 4.006 9 N -0.648 5.648 10 C 0.518 3.482 11 O -0.495 6.495 12 C 0.068 3.932 13 H 0.111 0.889 14 C -0.164 4.164 15 O -0.333 6.333 16 C 0.460 3.540 17 O -0.510 6.510 18 C -0.095 4.095 19 C -0.001 4.001 20 C -0.527 4.527 21 H 0.076 0.924 22 C 0.070 3.930 23 N -0.900 5.900 24 Si 0.877 3.123 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.262 1.262 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.406 0.594 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.026 0.974 44 H 0.021 0.979 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.823 15.232 -13.086 33.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 N -0.111 5.111 4 N -0.157 5.157 5 C -0.036 4.036 6 C -0.050 4.050 7 C -0.149 4.149 8 C -0.110 4.110 9 N -0.300 5.300 10 C 0.303 3.697 11 O -0.366 6.366 12 C 0.009 3.991 13 H 0.128 0.872 14 C -0.222 4.222 15 O -0.250 6.250 16 C 0.304 3.696 17 O -0.398 6.398 18 C -0.132 4.132 19 C -0.039 4.039 20 C -0.565 4.565 21 H 0.094 0.906 22 C -0.132 4.132 23 N -0.538 5.538 24 Si 0.704 3.296 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.186 1.186 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.242 0.758 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.044 0.956 44 H 0.040 0.960 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 26.576 16.851 -12.654 33.916 hybrid contribution 0.061 -1.658 -1.275 2.092 sum 26.637 15.193 -13.928 33.680 Atomic orbital electron populations 1.20160 0.86236 1.03013 1.03429 1.22410 0.97232 0.89566 0.98000 1.77360 0.85950 1.21879 1.25886 1.48204 1.05702 1.03621 1.58145 1.21836 0.83649 0.94713 1.03354 1.20963 0.96343 0.85049 1.02618 1.20442 0.92703 0.98363 1.03352 1.16865 0.90242 0.84826 1.19024 1.42560 1.52092 1.08888 1.26443 1.20400 0.78818 0.88338 0.82102 1.90773 1.56540 1.57356 1.31934 1.22260 0.91966 0.92439 0.92421 0.87183 1.22152 0.97008 0.99535 1.03492 1.86738 1.37732 1.60437 1.40085 1.24923 0.79398 0.74802 0.90487 1.90606 1.72920 1.47893 1.28343 1.21574 0.94044 1.03435 0.94156 1.19490 0.93122 0.93555 0.97709 1.21034 1.09707 1.26185 0.99535 0.90588 1.24962 0.95362 0.96209 0.96627 1.69907 1.15580 1.36085 1.32262 0.86798 0.77165 0.80513 0.85078 1.20191 1.21338 1.18591 0.89906 0.90718 0.91051 0.90668 0.89051 0.89517 0.89968 0.90756 0.89594 0.75810 0.90816 0.90215 0.90541 0.88134 0.88038 0.95581 0.96026 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 9.60 36.01 0.35 -0.46 16 2 C 0.10 1.21 6.89 -82.26 -0.57 0.65 16 3 N -0.29 -3.64 12.56 33.75 0.42 -3.21 16 4 N -0.37 -3.55 4.04 -63.57 -0.26 -3.81 16 5 C 0.11 0.50 11.29 59.85 0.68 1.17 16 6 C 0.08 0.71 6.98 -81.72 -0.57 0.14 16 7 C -0.09 -0.42 10.08 36.01 0.36 -0.06 16 8 C -0.01 -0.07 5.94 -83.88 -0.50 -0.57 16 9 N -0.65 -6.17 5.24 -10.04 -0.05 -6.22 16 10 C 0.52 6.65 6.19 -10.99 -0.07 6.58 16 11 O -0.49 -8.48 15.60 -14.07 -0.22 -8.70 16 12 C 0.07 0.87 2.98 -27.88 -0.08 0.78 16 13 H 0.11 1.33 7.16 -51.93 -0.37 0.96 16 14 C -0.16 -1.56 9.49 37.16 0.35 -1.21 16 15 O -0.33 -5.53 9.42 -45.88 -0.43 -5.96 16 16 C 0.46 8.51 7.93 36.01 0.29 8.80 16 17 O -0.51 -10.31 15.20 -18.75 -0.29 -10.59 16 18 C -0.09 -1.87 5.75 -27.88 -0.16 -2.03 16 19 C 0.00 -0.03 3.33 -27.88 -0.09 -0.12 16 20 C -0.53 -14.90 9.66 -34.44 -0.33 -15.23 16 21 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 22 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 23 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 24 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.83 7.26 -51.93 -0.38 0.45 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.20 7.09 -51.93 -0.37 -0.16 16 34 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.07 0.24 7.12 -51.93 -0.37 -0.13 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.41 2.44 8.44 -40.82 -0.34 2.09 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.08 0.45 7.77 -51.93 -0.40 0.04 16 41 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 42 H 0.10 1.92 8.14 -51.94 -0.42 1.49 16 43 H 0.03 0.65 7.15 -51.93 -0.37 0.28 16 44 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 45 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 383.05 15.07 5.77 5.77 Total: -1.00 -37.94 383.05 -6.20 -44.14 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -6.81 Total: -2.31 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -0.45 Total: 0.39 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.89 Total: -40.13 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.94 Total: -25.25 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.94 -6.20 -44.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812619079.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.274 kcal (2) G-P(sol) polarization free energy of solvation -37.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds