Wall clock time and date at job start Tue Mar 31 2020 14:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30833 * 125.83143 * 2 1 4 4 N 1.40065 * 108.36730 * 180.26052 * 3 2 1 5 5 C 1.46504 * 126.05289 * 179.71996 * 4 3 2 6 6 C 1.35813 * 107.89455 * 359.71110 * 4 3 2 7 7 C 1.50700 * 126.21799 * 179.97438 * 6 4 3 8 8 C 1.35750 * 107.56108 * 0.02562 * 6 4 3 9 9 N 1.40771 * 126.07827 * 179.97438 * 8 6 4 10 10 C 1.34774 * 119.99719 * 121.70818 * 9 8 6 11 11 O 1.21300 * 120.00169 * 355.03367 * 10 9 8 12 12 C 1.50698 * 119.99559 * 175.03582 * 10 9 8 13 13 H 1.09003 * 109.47234 * 304.99849 * 12 10 9 14 14 C 1.53006 * 109.47601 * 64.99856 * 12 10 9 15 15 O 1.45203 * 109.46996 * 184.99640 * 12 10 9 16 16 C 1.34228 * 116.99832 * 149.99814 * 15 12 10 17 17 O 1.20829 * 120.00393 * 0.02562 * 16 15 12 18 18 C 1.50709 * 119.99746 * 180.02562 * 16 15 12 19 19 C 1.53002 * 109.46641 * 180.02562 * 18 16 15 20 20 C 1.50709 * 109.46641 * 180.02562 * 19 18 16 21 21 H 1.07994 * 120.00093 * 0.02562 * 20 19 18 22 22 C 1.37874 * 119.99601 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99719 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00484 * 359.97438 * 22 20 19 25 25 H 1.48493 * 109.47080 * 89.99940 * 24 22 20 26 26 H 1.48498 * 109.47176 * 210.00330 * 24 22 20 27 27 H 1.48507 * 109.46738 * 330.00006 * 24 22 20 28 28 H 1.09004 * 109.47201 * 287.95772 * 1 2 3 29 29 H 1.08991 * 109.47405 * 47.96063 * 1 2 3 30 30 H 1.09004 * 109.47257 * 167.96467 * 1 2 3 31 31 H 1.08998 * 109.46556 * 269.99473 * 5 4 3 32 32 H 1.09003 * 109.47073 * 29.99091 * 5 4 3 33 33 H 1.08995 * 109.47259 * 149.99501 * 5 4 3 34 34 H 1.09005 * 109.46870 * 270.02515 * 7 6 4 35 35 H 1.08997 * 109.47334 * 30.02398 * 7 6 4 36 36 H 1.08999 * 109.47042 * 150.02599 * 7 6 4 37 37 H 0.97000 * 119.99688 * 301.71098 * 9 8 6 38 38 H 1.09003 * 109.46832 * 59.99747 * 14 12 10 39 39 H 1.08993 * 109.47188 * 179.97438 * 14 12 10 40 40 H 1.08996 * 109.46639 * 300.00424 * 14 12 10 41 41 H 1.08999 * 109.47210 * 299.99566 * 18 16 15 42 42 H 1.08989 * 109.47242 * 60.00334 * 18 16 15 43 43 H 1.09000 * 109.47326 * 299.99729 * 19 18 16 44 44 H 1.08994 * 109.47616 * 60.00136 * 19 18 16 45 45 H 0.97000 * 119.99848 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2729 1.0607 0.0000 4 7 3.6090 0.6404 -0.0060 5 6 4.7869 1.5115 -0.0139 6 6 3.6192 -0.7177 -0.0032 7 6 4.8416 -1.5990 -0.0082 8 6 2.3281 -1.1370 0.0039 9 7 1.8911 -2.4752 0.0083 10 6 1.1036 -2.9235 1.0059 11 8 0.8451 -2.2015 1.9457 12 6 0.5443 -4.3219 0.9537 13 1 0.0019 -4.4617 0.0186 14 6 1.6899 -5.3329 1.0349 15 8 -0.3594 -4.5237 2.0722 16 6 -1.3749 -5.3819 1.8879 17 8 -1.5043 -5.9462 0.8273 18 6 -2.3539 -5.6417 3.0039 19 6 -3.4040 -6.6514 2.5363 20 6 -4.3833 -6.9107 3.6522 21 1 -4.2684 -6.4055 4.5997 22 6 -5.4264 -7.7921 3.4628 23 7 -6.2814 -8.0181 4.4363 24 14 -5.6264 -8.6644 1.8230 25 1 -4.8759 -9.9454 1.8491 26 1 -7.0656 -8.9386 1.5805 27 1 -5.0967 -7.8023 0.7360 28 1 -0.3634 0.3169 0.9776 29 1 -0.3634 0.6881 -0.7632 30 1 -0.3634 -1.0051 -0.2143 31 1 5.0737 1.7253 -1.0435 32 1 4.5524 2.4442 0.4992 33 1 5.6108 1.0130 0.4968 34 1 5.1308 -1.8133 -1.0371 35 1 5.6596 -1.0886 0.5003 36 1 4.6187 -2.5325 0.5085 37 1 2.1568 -3.0745 -0.7066 38 1 2.2322 -5.1931 1.9700 39 1 1.2852 -6.3442 0.9976 40 1 2.3682 -5.1813 0.1953 41 1 -1.8229 -6.0435 3.8669 42 1 -2.8445 -4.7088 3.2813 43 1 -3.9351 -6.2500 1.6733 44 1 -2.9130 -7.5843 2.2592 45 1 -7.0151 -8.6384 4.3032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812619079.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:42 Heat of formation + Delta-G solvation = -79.215988 kcal Electronic energy + Delta-G solvation = -27075.760329 eV Core-core repulsion = 23094.097672 eV Total energy + Delta-G solvation = -3981.662657 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.57838 -41.79405 -40.38437 -37.69865 -36.04620 -35.62488 -34.98365 -33.64926 -33.06375 -31.78666 -30.50694 -28.46104 -27.80768 -26.48686 -25.56680 -23.81075 -22.19448 -21.35214 -21.12036 -20.54808 -19.44117 -18.88066 -18.42958 -17.95394 -17.40648 -16.95499 -16.57393 -16.44314 -16.24283 -16.00712 -15.25930 -15.09508 -14.82682 -14.76113 -14.47917 -14.30153 -14.15921 -13.99554 -13.83251 -13.47286 -13.43423 -13.35512 -13.30096 -12.92787 -12.91495 -12.85707 -12.69393 -12.25574 -12.02239 -11.96702 -11.91042 -11.78200 -11.50092 -11.40018 -11.01869 -10.78295 -10.77213 -10.08959 -9.16259 -8.30107 -6.34967 0.68041 1.06981 1.20152 1.30718 1.36770 1.38778 1.52474 1.54308 1.69723 2.31828 2.36498 3.05064 3.40758 3.60450 3.62818 3.73497 3.86434 3.89748 3.99575 4.25760 4.30210 4.36294 4.38172 4.39908 4.59773 4.61325 4.62364 4.65858 4.71877 4.73041 4.83104 4.85248 5.01976 5.07748 5.08745 5.17095 5.23332 5.32290 5.37531 5.59331 5.67745 6.03465 6.22609 6.31956 6.60457 6.68267 6.76824 7.11495 7.29951 8.85590 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.028288 B = 0.002273 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.573500 B =12314.628893 C =12700.245078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.071 3.929 3 N -0.324 5.324 4 N -0.373 5.373 5 C 0.094 3.906 6 C 0.094 3.906 7 C -0.090 4.090 8 C -0.040 4.040 9 N -0.623 5.623 10 C 0.523 3.477 11 O -0.546 6.546 12 C 0.062 3.938 13 H 0.118 0.882 14 C -0.159 4.159 15 O -0.342 6.342 16 C 0.473 3.527 17 O -0.528 6.528 18 C -0.093 4.093 19 C 0.005 3.995 20 C -0.534 4.534 21 H 0.047 0.953 22 C 0.011 3.989 23 N -0.944 5.944 24 Si 0.943 3.057 25 H -0.265 1.265 26 H -0.281 1.281 27 H -0.255 1.255 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.425 0.575 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.119 0.881 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.019 0.981 44 H 0.022 0.978 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.006 14.836 -15.355 36.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.096 4.096 3 N -0.148 5.148 4 N -0.156 5.156 5 C -0.046 4.046 6 C -0.037 4.037 7 C -0.147 4.147 8 C -0.143 4.143 9 N -0.275 5.275 10 C 0.309 3.691 11 O -0.421 6.421 12 C 0.004 3.996 13 H 0.136 0.864 14 C -0.216 4.216 15 O -0.258 6.258 16 C 0.318 3.682 17 O -0.417 6.417 18 C -0.131 4.131 19 C -0.033 4.033 20 C -0.572 4.572 21 H 0.065 0.935 22 C -0.186 4.186 23 N -0.584 5.584 24 Si 0.767 3.233 25 H -0.190 1.190 26 H -0.206 1.206 27 H -0.179 1.179 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.135 0.865 34 H 0.126 0.874 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.264 0.736 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.138 0.862 41 H 0.131 0.869 42 H 0.125 0.875 43 H 0.038 0.962 44 H 0.040 0.960 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 29.811 16.475 -14.962 37.201 hybrid contribution -0.774 -1.391 -0.541 1.681 sum 29.037 15.084 -15.502 36.207 Atomic orbital electron populations 1.20086 0.86635 1.02879 1.02856 1.22588 0.97554 0.90585 0.98851 1.77266 0.87722 1.22548 1.27244 1.48658 1.05607 1.04556 1.56790 1.22255 0.82748 0.94500 1.05073 1.21612 0.97037 0.85219 0.99789 1.20653 0.91156 0.97633 1.05307 1.17081 0.91096 0.84783 1.21370 1.42261 1.50660 1.08759 1.25787 1.20439 0.78743 0.87911 0.81993 1.90759 1.58697 1.58523 1.34141 1.22661 0.92364 0.93374 0.91231 0.86416 1.22198 0.96265 0.97756 1.05412 1.86671 1.37683 1.59516 1.41959 1.24312 0.79565 0.74863 0.89495 1.90593 1.73561 1.48794 1.28801 1.21352 0.93901 1.02661 0.95171 1.19316 0.93322 0.94747 0.95901 1.21348 1.10630 1.25511 0.99680 0.93456 1.25868 0.95136 0.97232 1.00398 1.70038 1.16512 1.37284 1.34568 0.85757 0.77523 0.79597 0.80440 1.18981 1.20631 1.17865 0.91570 0.89476 0.91588 0.88753 0.89242 0.86548 0.87399 0.88755 0.89281 0.73580 0.90869 0.91084 0.86235 0.86879 0.87496 0.96244 0.95958 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.60 9.60 71.24 0.68 -0.92 16 2 C 0.07 1.81 6.89 43.20 0.30 2.11 16 3 N -0.32 -8.16 12.56 -47.15 -0.59 -8.76 16 4 N -0.37 -6.45 4.04 -355.02 -1.43 -7.88 16 5 C 0.09 0.64 11.29 127.77 1.44 2.08 16 6 C 0.09 1.46 6.98 41.37 0.29 1.75 16 7 C -0.09 -0.47 10.08 71.24 0.72 0.25 16 8 C -0.04 -0.84 5.94 37.62 0.22 -0.61 16 9 N -0.62 -10.76 5.24 -304.05 -1.59 -12.35 16 10 C 0.52 12.95 6.19 87.66 0.54 13.49 16 11 O -0.55 -18.95 15.60 15.66 0.24 -18.70 16 12 C 0.06 1.48 2.98 29.85 0.09 1.57 16 13 H 0.12 2.65 7.16 -2.39 -0.02 2.63 16 14 C -0.16 -2.59 9.49 71.98 0.68 -1.91 16 15 O -0.34 -11.12 9.42 -45.05 -0.42 -11.54 16 16 C 0.47 17.13 7.93 71.24 0.56 17.70 16 17 O -0.53 -20.67 15.20 21.95 0.33 -20.34 16 18 C -0.09 -3.68 5.75 29.85 0.17 -3.50 16 19 C 0.00 0.23 3.33 29.85 0.10 0.33 16 20 C -0.53 -30.66 9.66 25.60 0.25 -30.41 16 21 H 0.05 2.91 7.99 -2.91 -0.02 2.88 16 22 C 0.01 0.67 5.47 84.65 0.46 1.13 16 23 N -0.94 -59.02 13.96 21.45 0.30 -58.72 16 24 Si 0.94 45.35 27.47 68.60 1.88 47.23 16 25 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 26 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 27 H -0.25 -11.88 6.54 99.48 0.65 -11.23 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.07 1.61 7.26 -2.39 -0.02 1.59 16 31 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.09 0.66 8.14 -2.39 -0.02 0.65 16 33 H 0.12 0.10 7.09 -2.39 -0.02 0.08 16 34 H 0.11 0.09 8.14 -2.38 -0.02 0.07 16 35 H 0.09 0.16 7.12 -2.39 -0.02 0.14 16 36 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.42 3.85 8.44 -92.71 -0.78 3.06 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.12 0.88 7.77 -2.39 -0.02 0.86 16 41 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 42 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 43 H 0.02 0.95 7.15 -2.39 -0.02 0.94 16 44 H 0.02 1.06 7.53 -2.39 -0.02 1.05 16 45 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -84.76 383.05 5.41 -79.36 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 0.17 Total: 8.66 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 6.51 Total: 3.05 kcal Atomic # 7 Polarization: -84.39 SS G_CDS: -3.32 Total: -87.71 kcal Atomic # 8 Polarization: -50.74 SS G_CDS: 0.15 Total: -50.58 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.23 kcal Total: -84.76 5.41 -79.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812619079.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.140 kcal (2) G-P(sol) polarization free energy of solvation -84.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds