Wall clock time and date at job start Tue Mar 31 2020 14:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30817 * 125.83733 * 2 1 4 4 N 1.40065 * 108.37450 * 180.02562 * 3 2 1 5 5 C 1.46499 * 126.05754 * 180.02562 * 4 3 2 6 6 C 1.35813 * 107.88963 * 359.77618 * 4 3 2 7 7 C 1.50705 * 126.21794 * 180.22687 * 6 4 3 8 8 C 1.35747 * 107.56434 * 0.36275 * 6 4 3 9 9 N 1.40766 * 126.08425 * 179.89904 * 8 6 4 10 10 C 1.34771 * 120.00377 * 120.30442 * 9 8 6 11 11 O 1.21311 * 119.99477 * 355.09107 * 10 9 8 12 12 C 1.50700 * 120.00133 * 174.81011 * 10 9 8 13 13 H 1.08994 * 109.47093 * 55.27700 * 12 10 9 14 14 C 1.53005 * 109.47100 * 295.27563 * 12 10 9 15 15 O 1.45197 * 109.46988 * 175.27858 * 12 10 9 16 16 C 1.34228 * 117.00241 * 210.00153 * 15 12 10 17 17 O 1.20825 * 119.99495 * 0.02562 * 16 15 12 18 18 C 1.50695 * 120.00620 * 180.02562 * 16 15 12 19 19 C 1.52995 * 109.47595 * 179.97438 * 18 16 15 20 20 C 1.50695 * 109.47595 * 180.02562 * 19 18 16 21 21 H 1.08006 * 119.99791 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00484 * 179.97438 * 20 19 18 23 23 N 1.31521 * 119.99939 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00325 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46883 * 60.00262 * 24 22 20 26 26 H 1.48504 * 109.47201 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47318 * 300.00309 * 24 22 20 28 28 H 1.09001 * 109.47125 * 286.86073 * 1 2 3 29 29 H 1.09000 * 109.47159 * 46.85765 * 1 2 3 30 30 H 1.09004 * 109.47263 * 166.85591 * 1 2 3 31 31 H 1.08997 * 109.47405 * 89.97411 * 5 4 3 32 32 H 1.09003 * 109.47581 * 209.97749 * 5 4 3 33 33 H 1.09000 * 109.46968 * 329.97400 * 5 4 3 34 34 H 1.08999 * 109.46913 * 270.16181 * 7 6 4 35 35 H 1.08995 * 109.47351 * 30.16101 * 7 6 4 36 36 H 1.08996 * 109.47415 * 150.16386 * 7 6 4 37 37 H 0.97004 * 119.99387 * 300.31031 * 9 8 6 38 38 H 1.09004 * 109.46614 * 59.99977 * 14 12 10 39 39 H 1.08994 * 109.46571 * 179.97438 * 14 12 10 40 40 H 1.08994 * 109.47260 * 300.00035 * 14 12 10 41 41 H 1.09005 * 109.47228 * 299.99775 * 18 16 15 42 42 H 1.08997 * 109.47149 * 59.99658 * 18 16 15 43 43 H 1.08997 * 109.46922 * 299.99998 * 19 18 16 44 44 H 1.08997 * 109.47092 * 59.99696 * 19 18 16 45 45 H 0.97000 * 120.00001 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2729 1.0605 0.0000 4 7 3.6090 0.6402 -0.0006 5 6 4.7870 1.5112 -0.0003 6 6 3.6191 -0.7179 0.0041 7 6 4.8416 -1.5992 0.0101 8 6 2.3281 -1.1372 -0.0007 9 7 1.8909 -2.4753 -0.0002 10 6 1.1176 -2.9312 1.0050 11 8 0.8717 -2.2159 1.9534 12 6 0.5531 -4.3274 0.9477 13 1 1.3647 -5.0421 0.8118 14 6 -0.4231 -4.4351 -0.2256 15 8 -0.1456 -4.6181 2.1868 16 6 -0.1678 -5.8989 2.5879 17 8 0.3790 -6.7488 1.9256 18 6 -0.8745 -6.2769 3.8640 19 6 -0.7511 -7.7853 4.0879 20 6 -1.4584 -8.1634 5.3638 21 1 -1.9474 -7.4037 5.9556 22 6 -1.4822 -9.4791 5.7751 23 7 -0.8872 -10.4043 5.0542 24 14 -2.3583 -9.9476 7.3570 25 1 -3.7928 -9.5772 7.2566 26 1 -2.2387 -11.4118 7.5742 27 1 -1.7394 -9.2262 8.4979 28 1 -0.3633 0.2981 0.9835 29 1 -0.3633 0.7027 -0.7498 30 1 -0.3634 -1.0008 -0.2337 31 1 5.0791 1.7269 1.0274 32 1 5.6083 1.0118 -0.5143 33 1 4.5500 2.4430 -0.5138 34 1 5.1405 -1.8129 -1.0161 35 1 5.6547 -1.0893 0.5266 36 1 4.6138 -2.5331 0.5240 37 1 2.1464 -3.0691 -0.7234 38 1 0.1014 -4.2167 -1.1558 39 1 -0.8310 -5.4450 -0.2672 40 1 -1.2347 -3.7203 -0.0897 41 1 -0.4207 -5.7467 4.7014 42 1 -1.9276 -6.0058 3.7901 43 1 -1.2052 -8.3152 3.2506 44 1 0.3019 -8.0568 4.1617 45 1 -0.9036 -11.3299 5.3437 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812619080.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:45 Heat of formation + Delta-G solvation = -82.279876 kcal Electronic energy + Delta-G solvation = -26989.662477 eV Core-core repulsion = 23007.866960 eV Total energy + Delta-G solvation = -3981.795517 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.57357 -41.77531 -40.37567 -37.66886 -36.04317 -35.64091 -34.95829 -33.55135 -32.88092 -31.76635 -30.47739 -28.09887 -27.84774 -26.44940 -25.62004 -24.11423 -22.26102 -21.38926 -21.11091 -20.50775 -19.20613 -18.87183 -18.21196 -17.94380 -17.36077 -16.90887 -16.53900 -16.50971 -16.39541 -16.07825 -15.22250 -15.01564 -14.69238 -14.44013 -14.36506 -14.27055 -14.18715 -14.00844 -13.79391 -13.49932 -13.38939 -13.31540 -13.21331 -12.94690 -12.85209 -12.80634 -12.67647 -12.53951 -12.01305 -11.96549 -11.91068 -11.74074 -11.47558 -11.29583 -11.00190 -10.78190 -10.55572 -10.07928 -9.17763 -8.19001 -6.32241 0.67006 1.10466 1.20131 1.30795 1.44191 1.47973 1.53797 1.56266 1.71093 2.31692 2.45453 3.14564 3.41852 3.59716 3.62740 3.74309 3.87055 3.92575 3.98658 4.31726 4.36733 4.39388 4.41439 4.44211 4.61412 4.62565 4.65623 4.66765 4.68480 4.73274 4.85197 4.91402 5.00099 5.04492 5.08923 5.19664 5.29890 5.47774 5.56865 5.69502 5.81514 6.02029 6.14680 6.31416 6.61139 6.75212 6.85744 7.10682 7.37473 8.93191 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.025341 B = 0.002145 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.667682 B =13049.953794 C =13151.475341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.075 3.925 3 N -0.323 5.323 4 N -0.374 5.374 5 C 0.094 3.906 6 C 0.090 3.910 7 C -0.091 4.091 8 C -0.039 4.039 9 N -0.623 5.623 10 C 0.525 3.475 11 O -0.545 6.545 12 C 0.062 3.938 13 H 0.116 0.884 14 C -0.159 4.159 15 O -0.341 6.341 16 C 0.469 3.531 17 O -0.531 6.531 18 C -0.096 4.096 19 C 0.042 3.958 20 C -0.547 4.547 21 H 0.074 0.926 22 C -0.002 4.002 23 N -0.933 5.933 24 Si 0.972 3.028 25 H -0.263 1.263 26 H -0.286 1.286 27 H -0.265 1.265 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.424 0.576 38 H 0.116 0.884 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.115 0.885 43 H -0.005 1.005 44 H -0.008 1.008 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.811 22.795 -16.983 30.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.092 4.092 3 N -0.146 5.146 4 N -0.157 5.157 5 C -0.046 4.046 6 C -0.040 4.040 7 C -0.149 4.149 8 C -0.142 4.142 9 N -0.275 5.275 10 C 0.311 3.689 11 O -0.421 6.421 12 C 0.004 3.996 13 H 0.133 0.867 14 C -0.216 4.216 15 O -0.258 6.258 16 C 0.314 3.686 17 O -0.420 6.420 18 C -0.134 4.134 19 C 0.004 3.996 20 C -0.584 4.584 21 H 0.092 0.908 22 C -0.200 4.200 23 N -0.573 5.573 24 Si 0.796 3.204 25 H -0.188 1.188 26 H -0.211 1.211 27 H -0.190 1.190 28 H 0.084 0.916 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.138 0.862 33 H 0.114 0.886 34 H 0.127 0.873 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.264 0.736 38 H 0.134 0.866 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.127 0.873 42 H 0.133 0.867 43 H 0.014 0.986 44 H 0.010 0.990 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.998 24.267 -16.542 31.725 hybrid contribution -0.192 -1.695 0.421 1.757 sum 11.806 22.572 -16.121 30.146 Atomic orbital electron populations 1.20129 0.86044 1.03387 1.02882 1.22657 0.97851 0.90189 0.98524 1.77246 0.87571 1.22625 1.27190 1.48634 1.05716 1.04357 1.56954 1.22242 0.82894 0.94812 1.04621 1.21585 0.97139 0.85333 0.99979 1.20615 0.91495 0.97484 1.05268 1.17090 0.91058 0.84811 1.21260 1.42264 1.51280 1.08978 1.24972 1.20396 0.78486 0.87936 0.82089 1.90751 1.58850 1.58779 1.33692 1.22617 0.98027 0.94366 0.84596 0.86682 1.22184 0.99484 1.04003 0.95919 1.86670 1.69093 1.29346 1.40647 1.24482 0.77139 0.79574 0.87381 1.90607 1.44038 1.50997 1.56397 1.21535 1.01762 0.99120 0.90950 1.18777 0.95799 0.89053 0.95929 1.21606 1.34872 0.93976 1.07971 0.90793 1.26056 0.96277 0.96572 1.01109 1.70139 1.44831 1.01754 1.40546 0.85392 0.79258 0.76892 0.78833 1.18793 1.21131 1.18991 0.91569 0.89316 0.90805 0.89923 0.86186 0.88557 0.87254 0.88867 0.90025 0.73633 0.86561 0.91350 0.90662 0.87276 0.86671 0.98609 0.98952 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.43 9.65 71.24 0.69 -0.74 16 2 C 0.07 1.85 6.90 43.20 0.30 2.15 16 3 N -0.32 -8.04 12.56 -47.15 -0.59 -8.63 16 4 N -0.37 -6.78 4.04 -355.02 -1.43 -8.21 16 5 C 0.09 0.74 11.12 127.77 1.42 2.16 16 6 C 0.09 1.55 6.98 41.37 0.29 1.84 16 7 C -0.09 -0.77 9.87 71.24 0.70 -0.06 16 8 C -0.04 -0.84 5.92 37.62 0.22 -0.62 16 9 N -0.62 -11.53 5.22 -304.04 -1.59 -13.11 16 10 C 0.52 13.69 6.26 87.66 0.55 14.24 16 11 O -0.55 -19.40 15.68 15.62 0.24 -19.15 16 12 C 0.06 1.62 2.98 29.85 0.09 1.71 16 13 H 0.12 2.86 7.16 -2.39 -0.02 2.85 16 14 C -0.16 -3.06 9.50 71.98 0.68 -2.37 16 15 O -0.34 -11.82 9.42 -45.06 -0.42 -12.25 16 16 C 0.47 18.64 7.93 71.23 0.56 19.20 16 17 O -0.53 -23.54 15.20 21.97 0.33 -23.21 16 18 C -0.10 -4.02 5.75 29.85 0.17 -3.85 16 19 C 0.04 2.26 4.26 29.85 0.13 2.39 16 20 C -0.55 -30.83 9.11 25.60 0.23 -30.60 16 21 H 0.07 3.85 7.74 -2.91 -0.02 3.83 16 22 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 23 N -0.93 -57.70 13.29 21.45 0.28 -57.41 16 24 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 25 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 26 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 28 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 1.51 7.35 -2.38 -0.02 1.50 16 31 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.12 0.15 7.71 -2.39 -0.02 0.13 16 33 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.09 0.48 7.77 -2.39 -0.02 0.46 16 36 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 37 H 0.42 4.56 8.77 -92.71 -0.81 3.74 16 38 H 0.12 1.29 8.08 -2.39 -0.02 1.27 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.11 4.23 8.14 -2.38 -0.02 4.21 16 42 H 0.12 4.32 8.14 -2.39 -0.02 4.30 16 43 H 0.00 -0.27 8.10 -2.39 -0.02 -0.29 16 44 H -0.01 -0.48 8.10 -2.39 -0.02 -0.50 16 45 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -84.62 388.46 5.54 -79.08 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.19 Total: 11.05 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 6.50 Total: 5.78 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -3.33 Total: -87.37 kcal Atomic # 8 Polarization: -54.76 SS G_CDS: 0.15 Total: -54.61 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -84.62 5.54 -79.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812619080.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.202 kcal (2) G-P(sol) polarization free energy of solvation -84.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds