Wall clock time and date at job start Tue Mar 31 2020 13:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34225 * 116.99502 * 2 1 4 4 O 1.20822 * 120.00385 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00066 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.47292 * 300.00254 * 5 3 2 7 7 N 1.46897 * 109.47533 * 179.97438 * 5 3 2 8 8 C 1.46904 * 110.99524 * 85.00228 * 7 5 3 9 9 C 1.53006 * 109.46673 * 180.02562 * 8 7 5 10 10 O 1.42895 * 109.47036 * 65.00189 * 9 8 7 11 11 C 1.42901 * 113.99948 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47372 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99889 * 0.02562 * 12 11 10 14 14 C 1.37868 * 120.00134 * 179.97438 * 12 11 10 15 15 N 1.31523 * 120.00255 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 120.00267 * 0.02562 * 14 12 11 17 17 H 1.48508 * 109.47122 * 89.99598 * 16 14 12 18 18 H 1.48501 * 109.47335 * 209.99763 * 16 14 12 19 19 H 1.48496 * 109.47223 * 329.99926 * 16 14 12 20 20 C 1.50708 * 109.46802 * 59.99742 * 5 3 2 21 21 C 1.38259 * 119.94169 * 79.73264 * 20 5 3 22 22 C 1.38156 * 120.05229 * 179.72561 * 21 20 5 23 23 C 1.38727 * 119.94138 * 0.54354 * 22 21 20 24 24 O 1.35902 * 120.05577 * 179.75001 * 23 22 21 25 25 C 1.42903 * 116.99868 * 359.97438 * 24 23 22 26 26 C 1.38728 * 119.89259 * 359.72539 * 23 22 21 27 27 C 1.38146 * 119.94296 * 0.02562 * 26 23 22 28 28 H 1.09008 * 109.46856 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47954 * 300.00357 * 1 2 3 30 30 H 1.09002 * 109.46939 * 60.00636 * 1 2 3 31 31 H 1.00896 * 111.00192 * 321.04869 * 7 5 3 32 32 H 1.08992 * 109.47335 * 60.00263 * 8 7 5 33 33 H 1.08997 * 109.46819 * 299.99898 * 8 7 5 34 34 H 1.09001 * 109.47002 * 184.99666 * 9 8 7 35 35 H 1.08993 * 109.46955 * 305.00103 * 9 8 7 36 36 H 1.08995 * 109.47392 * 299.99575 * 11 10 9 37 37 H 1.09003 * 109.47182 * 59.99587 * 11 10 9 38 38 H 0.97000 * 120.00472 * 180.02562 * 15 14 12 39 39 H 1.07996 * 119.97749 * 359.97438 * 21 20 5 40 40 H 1.07995 * 120.02640 * 180.26873 * 22 21 20 41 41 H 1.08993 * 109.47343 * 180.02562 * 25 24 23 42 42 H 1.09003 * 109.47127 * 300.00486 * 25 24 23 43 43 H 1.09005 * 109.46944 * 60.00049 * 25 24 23 44 44 H 1.08001 * 120.03130 * 179.97438 * 26 23 22 45 45 H 1.08006 * 119.97296 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9557 0.7811 0.8908 7 7 3.9827 2.6837 -0.0002 8 6 4.0167 3.2232 1.3658 9 6 4.4532 4.6891 1.3243 10 8 3.4658 5.4608 0.6376 11 6 3.7778 6.8521 0.5430 12 6 2.6751 7.5652 -0.1963 13 1 1.8212 7.0113 -0.5575 14 6 2.7558 8.9247 -0.4108 15 7 1.7932 9.5471 -1.0556 16 14 4.2324 9.8828 0.2145 17 1 5.2864 9.9062 -0.8314 18 1 3.8210 11.2735 0.5339 19 1 4.7638 9.2305 1.4381 20 6 4.1055 0.5916 -1.2296 21 6 4.1000 1.2519 -2.4443 22 6 4.5991 0.6297 -3.5723 23 6 5.0956 -0.6629 -3.4876 24 8 5.5824 -1.2791 -4.5968 25 6 5.5517 -0.5368 -5.8175 26 6 5.0949 -1.3254 -2.2687 27 6 4.5995 -0.6969 -1.1427 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3635 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 3.3830 3.2378 -0.5929 32 1 4.7239 2.6501 1.9653 33 1 3.0235 3.1526 1.8092 34 1 4.5643 5.0641 2.3418 35 1 5.4060 4.7698 0.8012 36 1 3.8746 7.2717 1.5443 37 1 4.7168 6.9781 0.0040 38 1 1.8502 10.5035 -1.2068 39 1 3.7090 2.2564 -2.5106 40 1 4.5986 1.1475 -4.5200 41 1 5.9678 -1.1431 -6.6220 42 1 4.5213 -0.2737 -6.0569 43 1 6.1420 0.3726 -5.7047 44 1 5.4805 -2.3319 -2.2003 45 1 4.5991 -1.2121 -0.1934 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815069709.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:03 Heat of formation + Delta-G solvation = -134.130734 kcal Electronic energy + Delta-G solvation = -27198.660034 eV Core-core repulsion = 23182.323344 eV Total energy + Delta-G solvation = -4016.336690 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.90065 -40.10060 -38.09099 -37.27019 -36.59637 -35.15301 -32.67240 -31.60716 -31.21677 -29.06095 -28.23497 -27.62343 -27.01009 -25.20568 -22.88246 -22.19651 -21.86905 -21.43545 -20.51113 -18.36644 -17.90626 -17.10357 -16.93576 -16.71214 -16.24839 -15.93650 -15.80552 -15.48470 -15.35578 -14.76881 -14.40711 -14.15733 -14.10796 -13.74944 -13.47040 -13.30537 -13.16895 -12.82953 -12.74260 -12.40746 -12.21725 -12.17786 -12.00221 -11.70290 -11.58378 -11.33741 -10.97222 -10.95434 -10.85577 -10.73383 -10.60160 -10.52264 -9.84801 -9.15974 -9.11906 -8.83780 -8.63289 -8.45035 -8.27117 -6.09141 -4.07969 1.17458 1.25673 2.13779 2.64697 3.05878 3.26218 3.32961 3.34651 3.57664 4.12377 4.37371 4.55599 4.61708 4.66355 4.72350 4.80349 4.85914 4.91554 4.99727 5.01720 5.10249 5.20300 5.22104 5.24963 5.32339 5.34277 5.42042 5.53583 5.63196 5.87230 5.90388 5.99266 6.03973 6.16367 6.23440 6.29417 6.43624 6.57023 6.62654 6.85028 7.02472 7.18898 7.34183 7.62155 7.67931 8.03619 8.68876 9.03356 9.50152 11.03962 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.011439 B = 0.003025 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.181363 B = 9253.771410 C =10436.302549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.357 6.357 3 C 0.428 3.572 4 O -0.487 6.487 5 C 0.143 3.857 6 H 0.121 0.879 7 N -0.652 5.652 8 C 0.059 3.941 9 C 0.059 3.941 10 O -0.380 6.380 11 C 0.171 3.829 12 C -0.517 4.517 13 H 0.082 0.918 14 C 0.071 3.929 15 N -0.896 5.896 16 Si 0.876 3.124 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.266 1.266 20 C -0.108 4.108 21 C -0.049 4.049 22 C -0.207 4.207 23 C 0.128 3.872 24 O -0.320 6.320 25 C 0.026 3.974 26 C -0.154 4.154 27 C -0.059 4.059 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.370 0.630 32 H 0.081 0.919 33 H 0.044 0.956 34 H 0.045 0.955 35 H 0.049 0.951 36 H 0.002 0.998 37 H -0.001 1.001 38 H 0.266 0.734 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.098 0.902 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.131 0.869 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.422 -25.463 -1.776 26.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.273 6.273 3 C 0.267 3.733 4 O -0.373 6.373 5 C 0.031 3.969 6 H 0.138 0.862 7 N -0.286 5.286 8 C -0.070 4.070 9 C -0.019 4.019 10 O -0.299 6.299 11 C 0.096 3.904 12 C -0.555 4.555 13 H 0.100 0.900 14 C -0.130 4.130 15 N -0.535 5.535 16 Si 0.703 3.297 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.191 1.191 20 C -0.109 4.109 21 C -0.067 4.067 22 C -0.226 4.226 23 C 0.083 3.917 24 O -0.233 6.233 25 C -0.069 4.069 26 C -0.173 4.173 27 C -0.078 4.078 28 H 0.117 0.883 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.193 0.807 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.019 0.981 37 H 0.017 0.983 38 H 0.076 0.924 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.117 0.883 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.149 0.851 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.690 -25.345 -1.960 26.286 hybrid contribution -0.312 1.267 0.410 1.367 sum 6.378 -24.078 -1.550 24.957 Atomic orbital electron populations 1.23258 0.76755 1.03393 1.02694 1.86530 1.23147 1.33627 1.83996 1.25240 0.93425 0.81814 0.72777 1.90804 1.66483 1.36039 1.43967 1.20233 0.84802 0.93030 0.98884 0.86152 1.60995 1.55562 0.99865 1.12213 1.22114 1.00701 0.94811 0.89382 1.22330 0.92955 0.90268 0.96336 1.87910 1.44135 1.21224 1.76651 1.20578 0.96638 0.77835 0.95392 1.20903 1.06234 0.92807 1.35571 0.89967 1.24771 0.96278 0.97139 0.94830 1.69884 1.32625 1.09788 1.41181 0.86844 0.83289 0.79667 0.79895 1.19924 1.20843 1.19120 1.19164 1.03673 0.94689 0.93399 1.20844 0.95431 0.99365 0.91102 1.21230 1.06094 0.95071 1.00178 1.19078 0.94108 0.91471 0.87025 1.86048 1.78391 1.42857 1.16029 1.23068 1.02000 0.97431 0.84372 1.20312 1.05868 1.01093 0.90033 1.20744 0.95623 0.93330 0.98076 0.88296 0.91935 0.91893 0.80669 0.90043 0.93718 0.93702 0.93244 0.98057 0.98316 0.92415 0.85250 0.85282 0.88325 0.92553 0.92422 0.85128 0.85052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.34 10.48 -39.24 -0.41 -4.75 16 3 C 0.43 6.03 7.06 36.01 0.25 6.28 16 4 O -0.49 -8.78 15.05 -18.75 -0.28 -9.06 16 5 C 0.14 1.74 2.70 -70.01 -0.19 1.55 16 6 H 0.12 1.15 7.66 -51.93 -0.40 0.76 16 7 N -0.65 -9.55 5.56 -109.18 -0.61 -10.16 16 8 C 0.06 0.86 5.80 -3.82 -0.02 0.83 16 9 C 0.06 1.04 6.28 37.16 0.23 1.27 16 10 O -0.38 -8.97 9.85 -35.23 -0.35 -9.32 16 11 C 0.17 4.42 4.76 36.01 0.17 4.59 16 12 C -0.52 -15.69 9.99 -34.44 -0.34 -16.03 16 13 H 0.08 2.75 8.06 -52.49 -0.42 2.32 16 14 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 15 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 16 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 20 C -0.11 -1.26 4.88 -104.60 -0.51 -1.77 16 21 C -0.05 -0.61 9.31 -39.60 -0.37 -0.98 16 22 C -0.21 -2.33 9.04 -39.43 -0.36 -2.69 16 23 C 0.13 1.42 6.69 -39.22 -0.26 1.15 16 24 O -0.32 -3.29 10.50 -19.43 -0.20 -3.50 16 25 C 0.03 0.18 9.81 101.05 0.99 1.17 16 26 C -0.15 -1.55 9.99 -39.43 -0.39 -1.95 16 27 C -0.06 -0.58 9.66 -39.60 -0.38 -0.96 16 28 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 29 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 30 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 31 H 0.37 6.47 6.65 -39.29 -0.26 6.21 16 32 H 0.08 0.91 8.05 -51.93 -0.42 0.49 16 33 H 0.04 0.71 7.62 -51.93 -0.40 0.32 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.00 0.04 7.20 -51.93 -0.37 -0.33 16 37 H 0.00 -0.02 7.57 -51.93 -0.39 -0.41 16 38 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 39 H 0.13 1.73 7.25 -52.49 -0.38 1.35 16 40 H 0.13 1.24 6.30 -52.49 -0.33 0.91 16 41 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 43 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 44 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 45 H 0.13 0.95 8.03 -52.48 -0.42 0.53 16 LS Contribution 380.52 15.07 5.73 5.73 Total: -1.00 -35.52 380.52 -6.94 -42.46 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.72 Total: 2.95 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -0.21 Total: -4.09 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.17 Total: -37.46 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -1.24 Total: -26.62 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.52 -6.94 -42.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815069709.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.668 kcal (2) G-P(sol) polarization free energy of solvation -35.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds