Wall clock time and date at job start Tue Mar 31 2020 13:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45194 * 109.47451 * 2 1 4 4 C 1.34224 * 117.00230 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00317 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00170 * 180.02562 * 4 3 2 7 7 H 1.09003 * 109.47294 * 60.00004 * 6 4 3 8 8 N 1.46905 * 109.47206 * 180.02562 * 6 4 3 9 9 C 1.46901 * 110.99870 * 205.00135 * 8 6 4 10 10 C 1.53004 * 109.46916 * 180.02562 * 9 8 6 11 11 O 1.42897 * 109.46931 * 64.99951 * 10 9 8 12 12 C 1.42908 * 113.99340 * 179.97438 * 11 10 9 13 13 C 1.50707 * 109.46672 * 179.97438 * 12 11 10 14 14 H 1.07993 * 120.00017 * 0.02562 * 13 12 11 15 15 C 1.37872 * 119.99999 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99705 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00271 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47617 * 89.99709 * 17 15 13 19 19 H 1.48506 * 109.47116 * 209.99967 * 17 15 13 20 20 H 1.48504 * 109.47027 * 329.99471 * 17 15 13 21 21 C 1.50702 * 109.47188 * 300.00075 * 6 4 3 22 22 C 1.38282 * 119.97491 * 279.72741 * 21 6 4 23 23 C 1.38244 * 120.11186 * 179.72423 * 22 21 6 24 24 C 1.38159 * 120.05411 * 0.54722 * 23 22 21 25 25 C 1.38704 * 119.94834 * 359.72573 * 24 23 22 26 26 O 1.35897 * 120.06254 * 179.97438 * 25 24 23 27 27 C 1.38123 * 119.96803 * 99.99921 * 21 6 4 28 28 H 1.08999 * 109.46759 * 299.99952 * 1 2 3 29 29 H 1.08997 * 109.47119 * 59.99641 * 1 2 3 30 30 H 1.08998 * 109.47269 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46775 * 240.00218 * 2 1 3 32 32 H 1.08997 * 109.47119 * 120.00359 * 2 1 3 33 33 H 1.00901 * 110.99869 * 81.04847 * 8 6 4 34 34 H 1.09004 * 109.47031 * 299.99620 * 9 8 6 35 35 H 1.08995 * 109.47111 * 59.99900 * 9 8 6 36 36 H 1.08996 * 109.46698 * 184.99715 * 10 9 8 37 37 H 1.09000 * 109.46869 * 304.99619 * 10 9 8 38 38 H 1.08993 * 109.47338 * 299.99632 * 12 11 10 39 39 H 1.08996 * 109.47019 * 60.00173 * 12 11 10 40 40 H 0.97000 * 119.99603 * 180.02562 * 16 15 13 41 41 H 1.08007 * 119.94059 * 359.97438 * 22 21 6 42 42 H 1.08004 * 119.97010 * 180.25131 * 23 22 21 43 43 H 1.08009 * 120.02618 * 179.70885 * 24 23 22 44 44 H 0.96699 * 114.00734 * 270.02774 * 26 25 24 45 45 H 1.07995 * 120.03339 * 0.02562 * 27 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0012 7 1 3.5846 3.4692 0.8912 8 7 5.3878 2.8604 0.0010 9 6 5.9787 4.0738 0.5812 10 6 7.5041 3.9570 0.5632 11 8 7.9633 3.9225 -0.7895 12 6 9.3824 3.8145 -0.9190 13 6 9.7527 3.7862 -2.3796 14 1 8.9817 3.8452 -3.1334 15 6 11.0760 3.6849 -2.7533 16 7 12.0149 3.6125 -1.8352 17 14 11.5352 3.6505 -4.5637 18 1 11.7638 5.0373 -5.0429 19 1 12.7750 2.8535 -4.7448 20 1 10.4317 3.0332 -5.3426 21 6 3.4568 3.6734 -1.2293 22 6 4.0850 3.4568 -2.4420 23 6 3.6580 4.1263 -3.5736 24 6 2.6094 5.0223 -3.4931 25 6 1.9812 5.2456 -2.2768 26 8 0.9499 6.1267 -2.1950 27 6 2.4080 4.5681 -1.1435 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 5.7412 2.6955 -0.9296 34 1 5.6742 4.9416 -0.0038 35 1 5.6348 4.1896 1.6090 36 1 7.9402 4.8159 1.0732 37 1 7.8044 3.0412 1.0724 38 1 9.8571 4.6707 -0.4400 39 1 9.7220 2.8959 -0.4405 40 1 12.9459 3.5417 -2.0982 41 1 4.9081 2.7604 -2.5059 42 1 4.1477 3.9523 -4.5204 43 1 2.2792 5.5486 -4.3766 44 1 1.2218 7.0333 -1.9967 45 1 1.9208 4.7406 -0.1953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815084159.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:10 Heat of formation + Delta-G solvation = -148.350552 kcal Electronic energy + Delta-G solvation = -27347.840012 eV Core-core repulsion = 23330.886704 eV Total energy + Delta-G solvation = -4016.953307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.81373 -39.75171 -37.82777 -36.81868 -36.57116 -35.21359 -32.80724 -32.13110 -31.49688 -30.09198 -28.79686 -27.12237 -25.91676 -23.46369 -22.89083 -22.37614 -22.25924 -21.40890 -20.64246 -18.53679 -17.55605 -17.00752 -16.59265 -16.57031 -16.25740 -15.98056 -15.75180 -15.33028 -15.17305 -14.74669 -14.40469 -14.21200 -13.85847 -13.71833 -13.51891 -13.19583 -12.95561 -12.88729 -12.39894 -12.28722 -12.16167 -11.90219 -11.87314 -11.75680 -11.49931 -11.31215 -10.84326 -10.80434 -10.74751 -10.69978 -10.63849 -10.41680 -10.03953 -9.11987 -9.04234 -8.84656 -8.77913 -8.46908 -8.18391 -6.11358 -4.13146 1.00928 1.14627 2.23257 2.46736 3.29324 3.34587 3.39374 3.42634 3.98419 4.21721 4.33750 4.43591 4.65263 4.68011 4.72589 4.80992 4.89180 4.93695 5.02437 5.06425 5.13471 5.25266 5.37170 5.38954 5.46482 5.54471 5.62110 5.65276 5.72890 5.76577 5.99524 6.10207 6.18440 6.23340 6.29175 6.33998 6.36845 6.60429 6.90356 7.10721 7.38217 7.43715 7.44418 7.77905 7.81033 8.14363 8.55596 8.99318 9.51586 11.00193 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.011500 B = 0.003194 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.131860 B = 8763.008165 C = 9792.083021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.359 6.359 4 C 0.468 3.532 5 O -0.478 6.478 6 C 0.141 3.859 7 H 0.121 0.879 8 N -0.662 5.662 9 C 0.068 3.932 10 C 0.062 3.938 11 O -0.399 6.399 12 C 0.198 3.802 13 C -0.514 4.514 14 H 0.065 0.935 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.907 3.093 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.103 4.103 22 C -0.110 4.110 23 C -0.095 4.095 24 C -0.139 4.139 25 C 0.101 3.899 26 O -0.500 6.500 27 C -0.121 4.121 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.366 0.634 34 H 0.042 0.958 35 H 0.080 0.920 36 H 0.045 0.955 37 H 0.049 0.951 38 H 0.004 0.996 39 H 0.007 0.993 40 H 0.264 0.736 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.389 0.611 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.218 1.012 3.521 24.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.276 6.276 4 C 0.308 3.692 5 O -0.363 6.363 6 C 0.029 3.971 7 H 0.139 0.861 8 N -0.297 5.297 9 C -0.061 4.061 10 C -0.016 4.016 11 O -0.319 6.319 12 C 0.123 3.877 13 C -0.552 4.552 14 H 0.084 0.916 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.734 3.266 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.196 1.196 21 C -0.105 4.105 22 C -0.128 4.128 23 C -0.113 4.113 24 C -0.158 4.158 25 C 0.056 3.944 26 O -0.310 6.310 27 C -0.140 4.140 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.190 0.810 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.022 0.978 39 H 0.025 0.975 40 H 0.073 0.927 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.146 0.854 44 H 0.245 0.755 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -24.207 -0.194 3.848 24.512 hybrid contribution 0.775 0.870 -1.234 1.698 sum -23.432 0.676 2.613 23.587 Atomic orbital electron populations 1.21794 0.92725 1.02823 1.03496 1.22996 0.95218 0.80381 1.02609 1.86497 1.24541 1.32193 1.84356 1.23406 0.80479 0.92186 0.73131 1.90694 1.60211 1.42215 1.43134 1.19946 0.90657 0.89040 0.97442 0.86133 1.60271 1.00640 1.37925 1.30837 1.22052 0.94508 0.90319 0.99212 1.22277 0.92160 0.99979 0.87199 1.87781 1.26756 1.94860 1.22530 1.20178 0.74538 0.95324 0.97611 1.21033 0.92300 1.50507 0.91381 0.91641 1.24946 0.96004 0.95178 0.98382 1.69965 1.00537 1.50207 1.32996 0.86352 0.77968 0.78070 0.84182 1.20520 1.21071 1.19638 1.20113 0.97051 0.98185 0.95160 1.21124 0.99752 0.99928 0.92040 1.21044 0.95883 0.95484 0.98850 1.21480 0.96331 1.00214 0.97759 1.18383 0.89175 0.94264 0.92529 1.84822 1.31018 1.21551 1.93584 1.21213 0.96304 0.97896 0.98615 0.91532 0.91494 0.90339 0.91293 0.91250 0.80986 0.93991 0.90208 0.93730 0.93255 0.97803 0.97544 0.92650 0.85038 0.84995 0.85351 0.75493 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.29 37.16 0.38 -0.69 16 2 C 0.06 0.62 6.19 37.16 0.23 0.85 16 3 O -0.36 -4.39 10.14 -39.24 -0.40 -4.78 16 4 C 0.47 6.58 7.31 36.01 0.26 6.84 16 5 O -0.48 -8.24 16.18 -18.75 -0.30 -8.55 16 6 C 0.14 1.78 2.74 -70.01 -0.19 1.59 16 7 H 0.12 1.23 7.66 -51.93 -0.40 0.83 16 8 N -0.66 -10.05 5.72 -109.18 -0.62 -10.68 16 9 C 0.07 0.97 5.90 -3.82 -0.02 0.95 16 10 C 0.06 1.12 6.28 37.16 0.23 1.36 16 11 O -0.40 -9.31 9.85 -35.23 -0.35 -9.66 16 12 C 0.20 5.38 5.69 36.01 0.20 5.59 16 13 C -0.51 -14.99 9.43 -34.44 -0.32 -15.31 16 14 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 17 Si 0.91 21.77 29.54 -169.99 -5.02 16.75 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 C -0.10 -1.26 4.63 -104.65 -0.48 -1.75 16 22 C -0.11 -1.45 9.11 -39.56 -0.36 -1.81 16 23 C -0.09 -1.12 10.04 -39.61 -0.40 -1.52 16 24 C -0.14 -1.51 9.99 -39.44 -0.39 -1.91 16 25 C 0.10 1.09 6.71 -39.22 -0.26 0.83 16 26 O -0.50 -4.64 13.50 -19.42 -0.26 -4.90 16 27 C -0.12 -1.33 9.61 -39.43 -0.38 -1.70 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 33 H 0.37 6.23 5.89 -39.29 -0.23 6.00 16 34 H 0.04 0.60 8.00 -51.93 -0.42 0.18 16 35 H 0.08 0.93 8.06 -51.93 -0.42 0.51 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.00 0.12 8.14 -51.93 -0.42 -0.31 16 39 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.13 1.87 6.49 -52.48 -0.34 1.52 16 42 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 43 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 44 H 0.39 1.79 9.06 45.56 0.41 2.20 16 45 H 0.13 1.19 8.03 -52.49 -0.42 0.77 16 LS Contribution 387.59 15.07 5.84 5.84 Total: -1.00 -34.65 387.59 -7.99 -42.64 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.01 Total: 4.68 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -1.60 Total: -5.17 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.11 Total: -36.85 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -1.31 Total: -27.89 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.65 -7.99 -42.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815084159.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.710 kcal (2) G-P(sol) polarization free energy of solvation -34.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds