Wall clock time and date at job start Tue Mar 31 2020 13:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45198 * 109.46923 * 2 1 4 4 C 1.34232 * 117.00249 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99596 * 359.97438 * 4 3 2 6 6 C 1.50694 * 120.00362 * 180.02562 * 4 3 2 7 7 H 1.09003 * 109.47094 * 300.00208 * 6 4 3 8 8 N 1.46906 * 109.47106 * 180.02562 * 6 4 3 9 9 C 1.46901 * 110.99793 * 85.00220 * 8 6 4 10 10 C 1.53000 * 109.46769 * 180.02562 * 9 8 6 11 11 O 1.42899 * 109.47405 * 64.99669 * 10 9 8 12 12 C 1.42901 * 113.99649 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.46545 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00589 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99844 * 180.02562 * 13 12 11 16 16 N 1.31502 * 119.99832 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99825 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47295 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46716 * 120.00059 * 17 15 13 20 20 H 1.48496 * 109.47278 * 239.99882 * 17 15 13 21 21 C 1.50701 * 109.47317 * 60.00214 * 6 4 3 22 22 C 1.38285 * 119.97163 * 79.99728 * 21 6 4 23 23 C 1.38247 * 120.11233 * 180.02562 * 22 21 6 24 24 C 1.38170 * 120.05380 * 359.95909 * 23 22 21 25 25 C 1.38712 * 119.94081 * 0.02562 * 24 23 22 26 26 O 1.35907 * 120.05364 * 180.02562 * 25 24 23 27 27 C 1.38123 * 119.97109 * 259.72534 * 21 6 4 28 28 H 1.09007 * 109.47127 * 299.99510 * 1 2 3 29 29 H 1.09001 * 109.47467 * 59.99942 * 1 2 3 30 30 H 1.09008 * 109.46896 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46813 * 240.00378 * 2 1 3 32 32 H 1.09001 * 109.47467 * 120.00058 * 2 1 3 33 33 H 1.00899 * 110.99995 * 321.04617 * 8 6 4 34 34 H 1.09002 * 109.47401 * 59.99808 * 9 8 6 35 35 H 1.09001 * 109.46874 * 299.99821 * 9 8 6 36 36 H 1.09002 * 109.46642 * 184.99944 * 10 9 8 37 37 H 1.09002 * 109.47069 * 304.99474 * 10 9 8 38 38 H 1.08990 * 109.47463 * 299.99806 * 12 11 10 39 39 H 1.08992 * 109.47069 * 60.00902 * 12 11 10 40 40 H 0.97004 * 120.00403 * 179.97438 * 16 15 13 41 41 H 1.07998 * 119.94670 * 359.97438 * 22 21 6 42 42 H 1.07999 * 119.97675 * 179.97438 * 23 22 21 43 43 H 1.07997 * 120.02601 * 180.02562 * 24 23 22 44 44 H 0.96700 * 114.00211 * 89.99469 * 26 25 24 45 45 H 1.08001 * 120.02753 * 359.97438 * 27 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.5842 3.4702 -0.8895 8 7 5.3876 2.8606 -0.0014 9 6 5.9058 2.7148 -1.3682 10 6 7.4334 2.6376 -1.3288 11 8 7.8329 1.4487 -0.6442 12 6 9.2488 1.2791 -0.5518 13 6 9.5545 0.0009 0.1855 14 1 8.7482 -0.6202 0.5470 15 6 10.8636 -0.3759 0.3986 16 7 11.8453 0.3805 -0.0411 17 14 11.2425 -1.9608 1.3120 18 1 9.9719 -2.6251 1.6988 19 1 12.0250 -2.8647 0.4310 20 1 12.0318 -1.6527 2.5315 21 6 3.4568 3.6725 1.2311 22 6 4.0816 3.4505 2.4447 23 6 3.6581 4.1228 3.5760 24 6 2.6096 5.0192 3.4965 25 6 1.9815 5.2437 2.2803 26 8 0.9503 6.1253 2.1993 27 6 2.4116 4.5715 1.1453 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.7109 2.1097 0.5900 34 1 5.6003 3.5734 -1.9662 35 1 5.5076 1.8025 -1.8123 36 1 7.8225 2.6189 -2.3469 37 1 7.8278 3.5084 -0.8051 38 1 9.6752 1.2319 -1.5537 39 1 9.6811 2.1216 -0.0121 40 1 12.7664 0.1157 0.1091 41 1 4.9012 2.7502 2.5089 42 1 4.1473 3.9475 4.5227 43 1 2.2794 5.5444 4.3805 44 1 1.2224 7.0319 2.0016 45 1 1.9272 4.7480 0.1964 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815084160.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:13 Heat of formation + Delta-G solvation = -151.873688 kcal Electronic energy + Delta-G solvation = -27229.560392 eV Core-core repulsion = 23212.454310 eV Total energy + Delta-G solvation = -4017.106082 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.91484 -39.73679 -37.74930 -36.87672 -36.63152 -35.13189 -32.80409 -32.18230 -31.57743 -30.08466 -28.77523 -27.02882 -25.85760 -23.51432 -22.86301 -22.32354 -22.21158 -21.42175 -20.66591 -18.51522 -17.78026 -16.98103 -16.77861 -16.53071 -16.34442 -15.97294 -15.55983 -15.36890 -15.16637 -14.69989 -14.38542 -14.19594 -13.89436 -13.70330 -13.54392 -13.05069 -13.00109 -12.84396 -12.40785 -12.30781 -12.09315 -11.89738 -11.85343 -11.75607 -11.51638 -11.31651 -10.83827 -10.77878 -10.76777 -10.69367 -10.65895 -10.50017 -10.00242 -9.06852 -9.05096 -8.81648 -8.74113 -8.60973 -8.15121 -6.08614 -4.09654 1.03848 1.15010 2.10663 2.54851 3.30822 3.37199 3.40995 3.44527 3.95460 4.16064 4.37354 4.46691 4.61067 4.67098 4.74110 4.80817 4.91861 4.94055 5.00090 5.08467 5.19656 5.28044 5.36905 5.39558 5.46717 5.55840 5.64822 5.69827 5.73319 5.75225 6.01961 6.11211 6.19762 6.26803 6.28154 6.33461 6.38230 6.61188 6.86081 7.12602 7.34481 7.43175 7.46209 7.66147 7.82878 8.17975 8.60061 9.04477 9.55107 11.03008 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.011993 B = 0.002982 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.178125 B = 9386.235934 C =10254.794466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.356 6.356 4 C 0.431 3.569 5 O -0.487 6.487 6 C 0.137 3.863 7 H 0.122 0.878 8 N -0.650 5.650 9 C 0.059 3.941 10 C 0.064 3.936 11 O -0.395 6.395 12 C 0.197 3.803 13 C -0.512 4.512 14 H 0.067 0.933 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.906 3.094 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.282 1.282 21 C -0.054 4.054 22 C -0.098 4.098 23 C -0.103 4.103 24 C -0.142 4.142 25 C 0.099 3.901 26 O -0.500 6.500 27 C -0.124 4.124 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.370 0.630 34 H 0.080 0.920 35 H 0.043 0.957 36 H 0.044 0.956 37 H 0.048 0.952 38 H 0.004 0.996 39 H 0.006 0.994 40 H 0.263 0.737 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.389 0.611 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.673 10.196 1.753 25.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.272 6.272 4 C 0.270 3.730 5 O -0.373 6.373 6 C 0.025 3.975 7 H 0.139 0.861 8 N -0.285 5.285 9 C -0.070 4.070 10 C -0.014 4.014 11 O -0.315 6.315 12 C 0.123 3.877 13 C -0.550 4.550 14 H 0.085 0.915 15 C -0.145 4.145 16 N -0.539 5.539 17 Si 0.734 3.266 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.208 1.208 21 C -0.055 4.055 22 C -0.116 4.116 23 C -0.121 4.121 24 C -0.160 4.160 25 C 0.055 3.945 26 O -0.310 6.310 27 C -0.143 4.143 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.194 0.806 34 H 0.098 0.902 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.022 0.978 39 H 0.024 0.976 40 H 0.072 0.928 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.145 0.855 44 H 0.244 0.756 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -23.633 9.903 1.955 25.699 hybrid contribution 0.683 -1.271 -0.025 1.443 sum -22.950 8.632 1.930 24.596 Atomic orbital electron populations 1.21792 0.92673 1.02861 1.03448 1.23033 0.95310 0.80500 1.02707 1.86541 1.24607 1.32205 1.83825 1.25086 0.81036 0.93971 0.72867 1.90795 1.60120 1.42357 1.44031 1.20318 0.89952 0.88539 0.98737 0.86068 1.60990 1.02372 1.52597 1.12495 1.22140 0.95478 1.00349 0.89046 1.22238 0.92533 0.90276 0.96398 1.87853 1.27153 1.39696 1.76807 1.20179 0.74882 0.96870 0.95804 1.21109 0.92202 1.06069 1.35642 0.91511 1.24943 0.95792 0.97741 0.96062 1.69969 0.99332 1.38025 1.46526 0.86302 0.78405 0.82652 0.79274 1.19486 1.20889 1.20834 1.19133 0.95757 0.97068 0.93502 1.21108 0.99217 0.99564 0.91717 1.21046 0.96320 0.96022 0.98755 1.21442 0.96484 1.00438 0.97667 1.18322 0.89308 0.94419 0.92479 1.84834 1.31071 1.21488 1.93595 1.21179 0.96538 0.97894 0.98645 0.91478 0.91558 0.90329 0.91251 0.91213 0.80607 0.90190 0.93828 0.93832 0.93386 0.97832 0.97616 0.92758 0.85195 0.85280 0.85527 0.75590 0.85217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.29 37.15 0.38 -0.77 16 2 C 0.06 0.63 6.19 37.15 0.23 0.86 16 3 O -0.36 -4.49 10.14 -39.26 -0.40 -4.89 16 4 C 0.43 6.15 7.07 36.00 0.25 6.41 16 5 O -0.49 -8.74 15.06 -18.75 -0.28 -9.02 16 6 C 0.14 1.70 2.70 -70.02 -0.19 1.52 16 7 H 0.12 1.22 7.65 -51.93 -0.40 0.82 16 8 N -0.65 -9.66 5.56 -109.18 -0.61 -10.27 16 9 C 0.06 0.88 5.80 -3.82 -0.02 0.86 16 10 C 0.06 1.18 6.28 37.16 0.23 1.42 16 11 O -0.40 -9.65 9.85 -35.23 -0.35 -10.00 16 12 C 0.20 5.48 5.69 36.01 0.20 5.69 16 13 C -0.51 -15.37 9.43 -34.44 -0.32 -15.70 16 14 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.23 13.28 55.43 0.74 -26.49 16 17 Si 0.91 22.26 29.54 -169.99 -5.02 17.24 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 C -0.05 -0.63 4.88 -104.65 -0.51 -1.14 16 22 C -0.10 -1.19 9.32 -39.56 -0.37 -1.55 16 23 C -0.10 -1.08 10.04 -39.60 -0.40 -1.47 16 24 C -0.14 -1.38 9.99 -39.43 -0.39 -1.77 16 25 C 0.10 0.99 6.70 -39.22 -0.26 0.73 16 26 O -0.50 -4.28 13.50 -19.45 -0.26 -4.55 16 27 C -0.12 -1.28 9.61 -39.44 -0.38 -1.66 16 28 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.47 8.14 -51.92 -0.42 0.04 16 31 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 32 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 33 H 0.37 6.51 6.65 -39.29 -0.26 6.25 16 34 H 0.08 0.94 8.05 -51.93 -0.42 0.52 16 35 H 0.04 0.71 7.62 -51.93 -0.40 0.32 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 39 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.13 1.69 7.24 -52.49 -0.38 1.31 16 42 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 43 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 44 H 0.39 1.45 9.06 45.56 0.41 1.87 16 45 H 0.13 1.13 8.03 -52.49 -0.42 0.70 16 LS Contribution 387.51 15.07 5.84 5.84 Total: -1.00 -35.24 387.51 -8.04 -43.28 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.06 Total: 3.92 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -1.64 Total: -5.05 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.13 Total: -36.76 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -1.29 Total: -28.46 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.24 -8.04 -43.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815084160.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.596 kcal (2) G-P(sol) polarization free energy of solvation -35.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds