Wall clock time and date at job start Tue Mar 31 2020 14:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42908 * 113.99711 * 2 1 4 4 C 1.53001 * 109.46640 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46998 * 179.97438 * 4 3 2 6 6 O 1.42900 * 109.47515 * 179.97438 * 5 4 3 7 7 C 1.42893 * 113.99976 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.46865 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.47234 * 179.97438 * 8 7 6 10 10 O 1.21287 * 119.99573 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99975 * 179.97438 * 9 8 7 12 12 C 1.39921 * 119.99877 * 174.78368 * 11 9 8 13 13 C 1.38965 * 120.03677 * 326.32563 * 12 11 9 14 14 C 1.38157 * 120.06801 * 180.02562 * 13 12 11 15 15 C 1.38169 * 120.13706 * 359.70116 * 14 13 12 16 16 C 1.38906 * 120.07315 * 0.55189 * 15 14 13 17 17 O 1.35748 * 120.03767 * 179.74321 * 16 15 14 18 18 C 1.34831 * 117.00041 * 173.82629 * 17 16 15 19 19 H 1.07995 * 120.00225 * 354.59241 * 18 17 16 20 20 C 1.38659 * 119.99714 * 174.59445 * 18 17 16 21 21 N 1.31558 * 120.00276 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99830 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47191 * 90.00132 * 22 20 18 24 24 H 1.48500 * 109.47295 * 209.99948 * 22 20 18 25 25 H 1.48507 * 109.47256 * 330.00497 * 22 20 18 26 26 C 1.38716 * 120.03490 * 146.34353 * 12 11 9 27 27 H 1.08999 * 109.47569 * 59.99939 * 1 2 3 28 28 H 1.09002 * 109.47278 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47137 * 300.00122 * 1 2 3 30 30 H 1.08992 * 109.47442 * 59.99841 * 3 2 1 31 31 H 1.09004 * 109.47007 * 299.99345 * 3 2 1 32 32 H 1.09000 * 109.47074 * 59.99952 * 4 3 2 33 33 H 1.08998 * 109.47431 * 299.99852 * 4 3 2 34 34 H 1.09005 * 109.46711 * 59.99831 * 5 4 3 35 35 H 1.08998 * 109.47193 * 300.00345 * 5 4 3 36 36 H 1.08998 * 109.47542 * 59.99871 * 7 6 5 37 37 H 1.09002 * 109.47213 * 299.99548 * 7 6 5 38 38 H 1.08998 * 109.47197 * 59.99598 * 8 7 6 39 39 H 1.09002 * 109.46786 * 299.99748 * 8 7 6 40 40 H 0.96999 * 120.00281 * 354.77895 * 11 9 8 41 41 H 1.08000 * 119.96674 * 0.02638 * 13 12 11 42 42 H 1.08000 * 119.93094 * 179.97438 * 14 13 12 43 43 H 1.08006 * 119.96415 * 180.29447 * 15 14 13 44 44 H 0.96997 * 120.00343 * 179.97438 * 21 20 18 45 45 H 1.07994 * 120.06977 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 8 5.5823 2.4697 0.0012 7 6 6.2646 3.7251 0.0013 8 6 7.7756 3.4843 0.0020 9 6 8.4954 4.8083 0.0015 10 8 7.8621 5.8427 0.0011 11 7 9.8427 4.8429 0.0024 12 6 10.5111 6.0671 -0.1082 13 6 9.9660 7.0906 -0.8740 14 6 10.6257 8.2995 -0.9842 15 6 11.8259 8.4970 -0.3287 16 6 12.3787 7.4761 0.4340 17 8 13.5605 7.6692 1.0734 18 6 13.9779 6.6875 1.8980 19 1 13.3397 5.8384 2.0932 20 6 15.2266 6.7680 2.4953 21 7 16.0039 7.8025 2.2580 22 14 15.8047 5.4082 3.6382 23 1 16.5223 4.3726 2.8522 24 1 16.7199 5.9764 4.6604 25 1 14.6313 4.7946 4.3106 26 6 11.7189 6.2603 0.5461 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6885 1.8465 0.8899 31 1 1.6886 1.8464 -0.8901 32 1 3.8573 0.6436 -0.8891 33 1 3.8567 0.6440 0.8908 34 1 3.8357 3.1239 0.8896 35 1 3.8364 3.1228 -0.8904 36 1 5.9860 4.2901 0.8908 37 1 5.9875 4.2894 -0.8892 38 1 8.0539 2.9195 -0.8877 39 1 8.0531 2.9198 0.8922 40 1 10.3490 4.0192 0.0799 41 1 9.0256 6.9409 -1.3836 42 1 10.2002 9.0932 -1.5802 43 1 12.3369 9.4448 -0.4129 44 1 16.8773 7.8590 2.6761 45 1 12.1450 5.4663 1.1412 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822400275.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:39 Heat of formation + Delta-G solvation = -135.409688 kcal Electronic energy + Delta-G solvation = -25461.280465 eV Core-core repulsion = 21444.888315 eV Total energy + Delta-G solvation = -4016.392149 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.30429 -38.87958 -38.59619 -37.97253 -36.47556 -34.28046 -33.56617 -32.27363 -31.53052 -29.34696 -28.52120 -27.47884 -25.45853 -25.22557 -24.04160 -22.14000 -21.86213 -21.55620 -19.99497 -18.08104 -17.81350 -17.39098 -17.05448 -16.81748 -16.31933 -16.08038 -15.66602 -15.37472 -15.19863 -15.02177 -14.52162 -14.40424 -14.21007 -13.93283 -13.67975 -13.54035 -13.04149 -12.97775 -12.40389 -12.36344 -12.07747 -11.99383 -11.74232 -11.69860 -11.60344 -11.32142 -11.31187 -11.14593 -11.04337 -10.77430 -10.45476 -10.17760 -10.00770 -9.90889 -9.61790 -9.47364 -8.82556 -7.76894 -7.18898 -6.46902 -4.06770 1.91230 2.34112 2.71041 2.80598 3.10960 3.11324 3.16211 3.24490 3.82922 3.94376 4.45026 4.51641 4.57880 4.61626 4.72425 4.78060 4.83292 4.86751 4.91036 4.95745 5.04839 5.08663 5.14363 5.20620 5.25123 5.28334 5.48737 5.55344 5.65532 5.68946 5.71827 5.95827 6.04123 6.21299 6.24822 6.60058 6.63167 6.84747 6.93072 6.95381 7.09580 7.27684 7.39386 7.63712 7.77695 7.97120 8.23292 8.98443 9.68472 10.71078 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.019787 B = 0.001754 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.752361 B =15955.801134 C =17205.161898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.392 6.392 3 C 0.064 3.936 4 C -0.119 4.119 5 C 0.068 3.932 6 O -0.390 6.390 7 C 0.079 3.921 8 C -0.139 4.139 9 C 0.515 3.485 10 O -0.523 6.523 11 N -0.668 5.668 12 C 0.179 3.821 13 C -0.206 4.206 14 C -0.063 4.063 15 C -0.200 4.200 16 C 0.168 3.832 17 O -0.176 6.176 18 C -0.393 4.393 19 H 0.090 0.910 20 C 0.040 3.960 21 N -0.862 5.862 22 Si 0.940 3.060 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.268 1.268 26 C -0.255 4.255 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.408 0.592 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.270 0.730 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.976 -13.107 -5.002 27.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.013 4.013 4 C -0.157 4.157 5 C -0.009 4.009 6 O -0.309 6.309 7 C 0.002 3.998 8 C -0.179 4.179 9 C 0.302 3.698 10 O -0.399 6.399 11 N -0.312 5.312 12 C 0.086 3.914 13 C -0.227 4.227 14 C -0.082 4.082 15 C -0.219 4.219 16 C 0.114 3.886 17 O -0.079 6.079 18 C -0.469 4.469 19 H 0.108 0.892 20 C -0.164 4.164 21 N -0.496 5.496 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.202 1.202 25 H -0.193 1.193 26 C -0.277 4.277 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.244 0.756 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.137 0.863 44 H 0.080 0.920 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -23.861 -12.472 -4.931 27.371 hybrid contribution 0.248 -0.705 0.667 1.002 sum -23.613 -13.177 -4.264 27.375 Atomic orbital electron populations 1.22762 0.80706 1.02945 1.00098 1.87871 1.19941 1.27783 1.95455 1.22374 0.93492 0.84892 1.00526 1.21369 0.92634 0.96851 1.04825 1.22271 0.81114 0.96805 1.00671 1.87776 1.17848 1.29665 1.95618 1.22120 0.90613 0.85049 1.01999 1.21464 0.94694 0.95766 1.05974 1.20426 0.82185 0.91120 0.76058 1.90735 1.66154 1.35090 1.47876 1.43475 1.06329 1.09029 1.72380 1.17410 0.92344 0.85543 0.96118 1.20523 1.02398 0.94470 1.05265 1.20530 0.93797 0.96198 0.97706 1.20258 0.98132 0.99087 1.04457 1.19088 0.86901 0.91950 0.90707 1.84019 1.29842 1.42687 1.51375 1.21274 1.01478 1.01742 1.22396 0.89247 1.25276 0.94902 0.98099 0.98154 1.70033 1.09799 1.28086 1.41720 0.85730 0.79002 0.79576 0.79219 1.19879 1.20227 1.19254 1.20825 0.98503 0.99896 1.08460 0.93956 0.89461 0.93954 0.92992 0.93000 0.90131 0.90107 0.92965 0.92975 0.92159 0.92202 0.87727 0.87781 0.75636 0.86403 0.86594 0.86347 0.91992 0.85206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.23 10.70 -35.23 -0.38 -3.61 16 3 C 0.06 0.42 5.94 37.16 0.22 0.64 16 4 C -0.12 -0.88 5.95 -26.73 -0.16 -1.03 16 5 C 0.07 0.53 5.94 37.16 0.22 0.75 16 6 O -0.39 -3.91 10.34 -35.23 -0.36 -4.27 16 7 C 0.08 0.80 5.23 37.16 0.19 1.00 16 8 C -0.14 -1.35 6.07 -27.88 -0.17 -1.52 16 9 C 0.51 7.15 7.56 -10.99 -0.08 7.07 16 10 O -0.52 -9.12 13.69 5.55 0.08 -9.05 16 11 N -0.67 -9.69 5.34 -9.88 -0.05 -9.74 16 12 C 0.18 3.37 6.27 -83.72 -0.52 2.85 16 13 C -0.21 -3.90 8.65 -39.34 -0.34 -4.24 16 14 C -0.06 -1.19 10.03 -39.64 -0.40 -1.59 16 15 C -0.20 -4.26 9.99 -39.36 -0.39 -4.66 16 16 C 0.17 4.05 6.64 -39.13 -0.26 3.79 16 17 O -0.18 -4.98 9.76 0.05 0.00 -4.98 16 18 C -0.39 -10.82 9.44 30.89 0.29 -10.52 16 19 H 0.09 2.27 5.30 -52.49 -0.28 1.99 16 20 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 21 N -0.86 -25.03 13.67 55.48 0.76 -24.27 16 22 Si 0.94 20.20 29.55 -169.99 -5.02 15.17 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 24 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 26 C -0.26 -5.47 9.04 -39.20 -0.35 -5.82 16 27 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 37 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 38 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.41 4.58 8.82 -40.82 -0.36 4.22 16 41 H 0.12 2.16 6.44 -52.49 -0.34 1.82 16 42 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 43 H 0.12 2.41 8.06 -52.48 -0.42 1.99 16 44 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.13 2.72 5.72 -52.49 -0.30 2.42 16 LS Contribution 384.10 15.07 5.79 5.79 Total: -1.00 -33.81 384.10 -6.68 -40.49 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -6.75 Total: 5.50 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -0.74 Total: -11.04 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.71 Total: -34.01 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.66 Total: -21.91 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.81 -6.68 -40.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822400275.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.917 kcal (2) G-P(sol) polarization free energy of solvation -33.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds