Wall clock time and date at job start Tue Mar 31 2020 14:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42908 * 113.99711 * 2 1 4 4 C 1.53001 * 109.46640 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46998 * 179.97438 * 4 3 2 6 6 O 1.42900 * 109.47515 * 179.97438 * 5 4 3 7 7 C 1.42893 * 113.99976 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.46865 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.47234 * 179.97438 * 8 7 6 10 10 O 1.21287 * 119.99573 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99975 * 179.97438 * 9 8 7 12 12 C 1.39921 * 119.99877 * 174.78368 * 11 9 8 13 13 C 1.38965 * 120.03677 * 326.32563 * 12 11 9 14 14 C 1.38157 * 120.06801 * 180.02562 * 13 12 11 15 15 C 1.38169 * 120.13706 * 359.70116 * 14 13 12 16 16 C 1.38906 * 120.07315 * 0.55189 * 15 14 13 17 17 O 1.35748 * 120.03767 * 179.74321 * 16 15 14 18 18 C 1.34831 * 117.00041 * 173.82629 * 17 16 15 19 19 H 1.07995 * 120.00225 * 354.59241 * 18 17 16 20 20 C 1.38659 * 119.99714 * 174.59445 * 18 17 16 21 21 N 1.31558 * 120.00276 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99830 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47191 * 90.00132 * 22 20 18 24 24 H 1.48500 * 109.47295 * 209.99948 * 22 20 18 25 25 H 1.48507 * 109.47256 * 330.00497 * 22 20 18 26 26 C 1.38716 * 120.03490 * 146.34353 * 12 11 9 27 27 H 1.08999 * 109.47569 * 59.99939 * 1 2 3 28 28 H 1.09002 * 109.47278 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47137 * 300.00122 * 1 2 3 30 30 H 1.08992 * 109.47442 * 59.99841 * 3 2 1 31 31 H 1.09004 * 109.47007 * 299.99345 * 3 2 1 32 32 H 1.09000 * 109.47074 * 59.99952 * 4 3 2 33 33 H 1.08998 * 109.47431 * 299.99852 * 4 3 2 34 34 H 1.09005 * 109.46711 * 59.99831 * 5 4 3 35 35 H 1.08998 * 109.47193 * 300.00345 * 5 4 3 36 36 H 1.08998 * 109.47542 * 59.99871 * 7 6 5 37 37 H 1.09002 * 109.47213 * 299.99548 * 7 6 5 38 38 H 1.08998 * 109.47197 * 59.99598 * 8 7 6 39 39 H 1.09002 * 109.46786 * 299.99748 * 8 7 6 40 40 H 0.96999 * 120.00281 * 354.77895 * 11 9 8 41 41 H 1.08000 * 119.96674 * 0.02638 * 13 12 11 42 42 H 1.08000 * 119.93094 * 179.97438 * 14 13 12 43 43 H 1.08006 * 119.96415 * 180.29447 * 15 14 13 44 44 H 0.96997 * 120.00343 * 179.97438 * 21 20 18 45 45 H 1.07994 * 120.06977 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 8 5.5823 2.4697 0.0012 7 6 6.2646 3.7251 0.0013 8 6 7.7756 3.4843 0.0020 9 6 8.4954 4.8083 0.0015 10 8 7.8621 5.8427 0.0011 11 7 9.8427 4.8429 0.0024 12 6 10.5111 6.0671 -0.1082 13 6 9.9660 7.0906 -0.8740 14 6 10.6257 8.2995 -0.9842 15 6 11.8259 8.4970 -0.3287 16 6 12.3787 7.4761 0.4340 17 8 13.5605 7.6692 1.0734 18 6 13.9779 6.6875 1.8980 19 1 13.3397 5.8384 2.0932 20 6 15.2266 6.7680 2.4953 21 7 16.0039 7.8025 2.2580 22 14 15.8047 5.4082 3.6382 23 1 16.5223 4.3726 2.8522 24 1 16.7199 5.9764 4.6604 25 1 14.6313 4.7946 4.3106 26 6 11.7189 6.2603 0.5461 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6885 1.8465 0.8899 31 1 1.6886 1.8464 -0.8901 32 1 3.8573 0.6436 -0.8891 33 1 3.8567 0.6440 0.8908 34 1 3.8357 3.1239 0.8896 35 1 3.8364 3.1228 -0.8904 36 1 5.9860 4.2901 0.8908 37 1 5.9875 4.2894 -0.8892 38 1 8.0539 2.9195 -0.8877 39 1 8.0531 2.9198 0.8922 40 1 10.3490 4.0192 0.0799 41 1 9.0256 6.9409 -1.3836 42 1 10.2002 9.0932 -1.5802 43 1 12.3369 9.4448 -0.4129 44 1 16.8773 7.8590 2.6761 45 1 12.1450 5.4663 1.1412 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822400275.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:38 Heat of formation + Delta-G solvation = -158.912612 kcal Electronic energy + Delta-G solvation = -25462.299628 eV Core-core repulsion = 21444.888315 eV Total energy + Delta-G solvation = -4017.411313 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.61863 -40.40303 -39.33701 -38.66065 -38.09192 -35.67818 -34.28401 -34.16754 -32.40620 -30.92669 -30.08363 -27.95821 -27.31781 -25.94762 -24.97106 -23.51821 -23.06644 -22.53387 -21.32025 -19.80025 -19.29807 -18.49608 -17.69527 -17.53151 -17.27468 -17.05245 -16.84645 -16.73784 -16.32234 -15.98465 -15.83563 -15.70062 -15.50070 -15.21833 -14.86384 -14.77633 -14.51543 -14.18092 -13.67916 -13.52591 -13.24340 -12.89966 -12.76162 -12.71666 -12.63457 -12.58490 -12.40808 -12.26994 -12.10903 -11.92860 -11.91904 -11.52137 -11.26646 -10.95664 -10.71028 -10.65017 -10.61358 -9.36636 -8.88519 -8.46308 -6.15245 0.38075 0.68774 1.36650 1.44979 1.53862 1.57380 1.81893 2.18275 2.48113 2.83461 3.14849 3.17213 3.49161 3.63558 3.91963 4.01481 4.04733 4.11241 4.14455 4.29769 4.32569 4.39987 4.43665 4.45241 4.49835 4.54091 4.55329 4.60877 4.63907 4.71795 4.81100 4.81708 4.86072 5.02256 5.08918 5.10948 5.12912 5.38096 5.46581 5.65662 5.66740 6.01638 6.12046 6.16039 6.22176 6.43626 6.98028 7.07798 7.77471 8.76676 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.019787 B = 0.001754 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.752361 B =15955.801134 C =17205.161898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.063 3.937 4 C -0.114 4.114 5 C 0.064 3.936 6 O -0.400 6.400 7 C 0.081 3.919 8 C -0.127 4.127 9 C 0.517 3.483 10 O -0.558 6.558 11 N -0.661 5.661 12 C 0.186 3.814 13 C -0.200 4.200 14 C -0.052 4.052 15 C -0.214 4.214 16 C 0.133 3.867 17 O -0.227 6.227 18 C -0.414 4.414 19 H 0.103 0.897 20 C -0.021 4.021 21 N -0.919 5.919 22 Si 1.018 2.982 23 H -0.261 1.261 24 H -0.274 1.274 25 H -0.253 1.253 26 C -0.260 4.260 27 H 0.051 0.949 28 H 0.095 0.905 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.425 0.575 41 H 0.132 0.868 42 H 0.154 0.846 43 H 0.119 0.881 44 H 0.273 0.727 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.278 -15.165 -5.326 30.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C -0.013 4.013 4 C -0.152 4.152 5 C -0.012 4.012 6 O -0.320 6.320 7 C 0.004 3.996 8 C -0.166 4.166 9 C 0.307 3.693 10 O -0.436 6.436 11 N -0.307 5.307 12 C 0.091 3.909 13 C -0.220 4.220 14 C -0.071 4.071 15 C -0.234 4.234 16 C 0.082 3.918 17 O -0.133 6.133 18 C -0.489 4.489 19 H 0.120 0.880 20 C -0.219 4.219 21 N -0.557 5.557 22 Si 0.837 3.163 23 H -0.186 1.186 24 H -0.199 1.199 25 H -0.177 1.177 26 C -0.281 4.281 27 H 0.070 0.930 28 H 0.113 0.887 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.264 0.736 41 H 0.150 0.850 42 H 0.172 0.828 43 H 0.137 0.863 44 H 0.082 0.918 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -26.222 -14.572 -5.283 30.461 hybrid contribution 0.645 -0.055 0.598 0.882 sum -25.577 -14.627 -4.685 29.834 Atomic orbital electron populations 1.22934 0.79274 1.03866 1.00997 1.87825 1.21646 1.28780 1.95661 1.22422 0.92756 0.84595 1.01564 1.21310 0.93399 0.96470 1.03998 1.22408 0.80039 0.97174 1.01583 1.87750 1.19050 1.29489 1.95689 1.22050 0.90946 0.85106 1.01520 1.21428 0.93792 0.93274 1.08121 1.21148 0.81529 0.92248 0.74388 1.90722 1.66716 1.36828 1.49352 1.43485 1.06842 1.08229 1.72137 1.17461 0.91440 0.87288 0.94703 1.20865 1.02481 0.94384 1.04303 1.20929 0.92312 0.97209 0.96619 1.20490 0.99271 0.98796 1.04868 1.19622 0.86521 0.93901 0.91755 1.83983 1.32083 1.43986 1.53289 1.21795 1.02202 1.02062 1.22890 0.88013 1.26577 0.94666 1.00829 0.99798 1.70182 1.10567 1.30882 1.44080 0.84595 0.78775 0.76122 0.76780 1.18587 1.19857 1.17650 1.20863 0.99387 0.99074 1.08800 0.92998 0.88660 0.93082 0.92008 0.91862 0.90860 0.91009 0.92179 0.91922 0.92985 0.92510 0.85260 0.85733 0.73601 0.85003 0.82820 0.86327 0.91828 0.85222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.42 -6.42 10.70 -148.98 -1.59 -8.01 16 3 C 0.06 0.72 5.94 71.98 0.43 1.15 16 4 C -0.11 -1.52 5.95 30.59 0.18 -1.34 16 5 C 0.06 0.87 5.94 71.98 0.43 1.30 16 6 O -0.40 -7.09 10.34 -148.98 -1.54 -8.63 16 7 C 0.08 1.44 5.23 71.98 0.38 1.82 16 8 C -0.13 -2.02 6.07 29.85 0.18 -1.84 16 9 C 0.52 12.92 7.56 87.66 0.66 13.58 16 10 O -0.56 -18.20 13.69 -3.05 -0.04 -18.25 16 11 N -0.66 -17.47 5.34 -303.56 -1.62 -19.09 16 12 C 0.19 6.69 6.27 38.14 0.24 6.93 16 13 C -0.20 -7.12 8.65 22.42 0.19 -6.93 16 14 C -0.05 -1.86 10.03 22.23 0.22 -1.64 16 15 C -0.21 -9.25 9.99 22.41 0.22 -9.02 16 16 C 0.13 6.61 6.64 22.56 0.15 6.76 16 17 O -0.23 -13.51 9.76 -22.73 -0.22 -13.73 16 18 C -0.41 -23.57 9.44 67.92 0.64 -22.93 16 19 H 0.10 5.26 5.30 -2.91 -0.02 5.25 16 20 C -0.02 -1.17 5.49 84.83 0.47 -0.70 16 21 N -0.92 -55.73 13.67 21.61 0.30 -55.44 16 22 Si 1.02 41.80 29.55 68.60 2.03 43.83 16 23 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 24 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 25 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 26 C -0.26 -11.12 9.04 22.51 0.20 -10.92 16 27 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.05 0.34 8.14 -2.38 -0.02 0.32 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.56 8.14 -2.38 -0.02 0.55 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 37 H 0.06 1.04 8.10 -2.39 -0.02 1.03 16 38 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.43 8.30 8.82 -92.71 -0.82 7.49 16 41 H 0.13 4.43 6.44 -2.91 -0.02 4.41 16 42 H 0.15 4.27 8.06 -2.91 -0.02 4.25 16 43 H 0.12 4.98 8.06 -2.91 -0.02 4.96 16 44 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 45 H 0.13 5.45 5.72 -2.91 -0.02 5.43 16 Total: -1.00 -76.43 384.10 3.33 -73.10 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: 0.18 Total: 28.53 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 5.85 Total: -22.32 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -1.32 Total: -74.53 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -3.40 Total: -48.62 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -76.43 3.33 -73.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822400275.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.818 kcal (2) G-P(sol) polarization free energy of solvation -76.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds