Wall clock time and date at job start Tue Mar 31 2020 13:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46905 * 109.47083 * 2 1 4 4 C 1.46892 * 111.00243 * 295.37589 * 3 2 1 5 5 C 1.50700 * 109.47057 * 291.02455 * 4 3 2 6 6 H 1.08005 * 120.00174 * 2.85814 * 5 4 3 7 7 C 1.37874 * 120.00240 * 182.85707 * 5 4 3 8 8 N 1.31519 * 119.99879 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00071 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47367 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46892 * 120.00585 * 9 7 5 12 12 H 1.48498 * 109.46886 * 239.99880 * 9 7 5 13 13 C 1.46899 * 110.99924 * 59.33227 * 3 2 1 14 14 H 1.09003 * 109.46777 * 298.30907 * 13 3 2 15 15 C 1.50703 * 109.47701 * 58.31129 * 13 3 2 16 16 O 1.20828 * 119.99667 * 29.02349 * 15 13 3 17 17 O 1.34228 * 120.00210 * 209.03407 * 15 13 3 18 18 C 1.50703 * 109.47193 * 178.31578 * 13 3 2 19 19 C 1.38179 * 119.94185 * 314.81282 * 18 13 3 20 20 C 1.38769 * 120.05347 * 180.23045 * 19 18 13 21 21 O 1.35897 * 120.02959 * 179.79452 * 20 19 18 22 22 C 1.42900 * 117.00249 * 179.72875 * 21 20 19 23 23 C 1.38632 * 119.94638 * 359.52280 * 20 19 18 24 24 C 1.38641 * 119.88963 * 0.24797 * 23 20 19 25 25 O 1.35893 * 120.02912 * 180.02562 * 24 23 20 26 26 C 1.42902 * 117.00110 * 359.97438 * 25 24 23 27 27 C 1.38173 * 119.94672 * 134.59053 * 18 13 3 28 28 H 1.09000 * 109.47349 * 299.64851 * 1 2 3 29 29 H 1.09010 * 109.46718 * 59.63818 * 1 2 3 30 30 H 1.08994 * 109.47382 * 179.63597 * 1 2 3 31 31 H 1.08997 * 109.47579 * 240.00398 * 2 1 3 32 32 H 1.09001 * 109.46670 * 119.99708 * 2 1 3 33 33 H 1.09003 * 109.47448 * 51.02318 * 4 3 2 34 34 H 1.08997 * 109.47511 * 171.02720 * 4 3 2 35 35 H 0.97000 * 119.99580 * 179.97438 * 8 7 5 36 36 H 0.96702 * 116.99737 * 179.97438 * 17 15 13 37 37 H 1.08001 * 119.97302 * 0.03063 * 19 18 13 38 38 H 1.08995 * 109.47321 * 180.02562 * 22 21 20 39 39 H 1.08999 * 109.46747 * 299.99970 * 22 21 20 40 40 H 1.09000 * 109.47078 * 59.99456 * 22 21 20 41 41 H 1.07995 * 120.05781 * 180.23055 * 23 20 19 42 42 H 1.08995 * 109.47390 * 179.97438 * 26 25 24 43 43 H 1.09005 * 109.47089 * 300.00549 * 26 25 24 44 44 H 1.09004 * 109.46998 * 59.99847 * 26 25 24 45 45 H 1.07993 * 119.97305 * 359.97438 * 27 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6411 2.0773 -1.2390 5 6 2.4089 1.4920 -2.3962 6 1 3.0736 0.6560 -2.2356 7 6 2.2629 2.0237 -3.6598 8 7 1.4538 3.0420 -3.8553 9 14 3.2141 1.2978 -5.0943 10 1 4.0486 0.1674 -4.6135 11 1 2.2614 0.8070 -6.1223 12 1 4.0880 2.3416 -5.6876 13 6 1.5356 2.1145 1.1796 14 1 0.4465 2.1550 1.1601 15 6 1.9896 1.4060 2.4298 16 8 3.0140 0.7653 2.4229 17 8 1.2558 1.4864 3.5509 18 6 2.0907 3.5155 1.1666 19 6 3.4260 3.7257 0.8800 20 6 3.9406 5.0145 0.8720 21 8 5.2548 5.2203 0.5942 22 6 5.7146 6.5733 0.5977 23 6 3.1116 6.0923 1.1421 24 6 1.7711 5.8792 1.4247 25 8 0.9559 6.9337 1.6894 26 6 1.5472 8.2343 1.6599 27 6 1.2625 4.5881 1.4366 28 1 -0.3634 0.5084 0.8931 29 1 -0.3633 0.5195 -0.8868 30 1 -0.3634 -1.0276 -0.0065 31 1 1.8934 -0.5137 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 0.5721 1.9533 -1.4125 34 1 1.8737 3.1383 -1.1482 35 1 1.3514 3.4163 -4.7444 36 1 1.5874 1.0148 4.3273 37 1 4.0704 2.8861 0.6652 38 1 6.7783 6.5962 0.3611 39 1 5.1642 7.1459 -0.1488 40 1 5.5516 7.0098 1.5831 41 1 3.5094 7.0963 1.1328 42 1 0.7889 8.9835 1.8874 43 1 2.3450 8.2876 2.4008 44 1 1.9589 8.4239 0.6686 45 1 0.2183 4.4216 1.6564 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829693164.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:23 Heat of formation + Delta-G solvation = -120.708507 kcal Electronic energy + Delta-G solvation = -28921.229024 eV Core-core repulsion = 24905.474366 eV Total energy + Delta-G solvation = -4015.754658 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.65655 -39.91081 -38.62791 -37.64964 -36.06445 -35.61041 -32.61794 -31.46847 -30.10939 -29.02968 -28.27079 -27.45063 -26.48432 -25.39422 -23.30382 -22.18991 -22.00497 -21.04315 -19.29776 -18.16631 -17.79356 -16.83267 -16.45835 -15.98766 -15.84086 -15.76817 -15.57569 -15.48826 -15.36207 -14.67676 -14.58834 -14.57148 -13.88112 -13.27170 -13.18896 -12.91886 -12.67107 -12.50502 -12.20201 -12.02726 -11.83342 -11.71697 -11.50332 -11.30657 -11.26232 -11.09562 -10.98514 -10.93417 -10.71007 -10.61011 -10.44439 -10.09502 -10.06011 -9.72157 -9.19206 -8.45469 -8.29128 -7.67004 -7.33298 -5.98973 -3.98942 1.46665 1.80401 2.53114 3.17995 3.34101 3.36447 3.41719 3.44885 3.47645 4.01003 4.46901 4.77738 4.91327 4.98495 5.05606 5.10041 5.18271 5.24898 5.36962 5.38756 5.39825 5.45105 5.48160 5.49756 5.58955 5.72028 5.80481 5.91088 6.04186 6.06658 6.33101 6.43145 6.57324 6.60721 6.69529 6.79208 6.85132 6.95939 7.23255 7.33241 7.36569 7.71755 7.78356 8.01450 8.12880 8.24617 8.49602 9.07469 9.64014 11.11738 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008807 B = 0.005645 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3178.523692 B = 4958.722431 C = 6500.064510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.052 3.948 3 N -0.509 5.509 4 C 0.189 3.811 5 C -0.500 4.500 6 H 0.065 0.935 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.135 3.865 14 H 0.078 0.922 15 C 0.486 3.514 16 O -0.489 6.489 17 O -0.520 6.520 18 C 0.000 4.000 19 C -0.131 4.131 20 C 0.158 3.842 21 O -0.309 6.309 22 C 0.029 3.971 23 C -0.290 4.290 24 C 0.155 3.845 25 O -0.315 6.315 26 C 0.029 3.971 27 C -0.168 4.168 28 H 0.044 0.956 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.000 1.000 34 H 0.042 0.958 35 H 0.259 0.741 36 H 0.404 0.596 37 H 0.148 0.852 38 H 0.098 0.902 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.130 0.870 42 H 0.098 0.902 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.625 7.323 13.695 15.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.077 4.077 3 N -0.234 5.234 4 C 0.066 3.934 5 C -0.539 4.539 6 H 0.083 0.917 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.211 1.211 13 C 0.025 3.975 14 H 0.095 0.905 15 C 0.326 3.674 16 O -0.374 6.374 17 O -0.332 6.332 18 C -0.001 4.001 19 C -0.150 4.150 20 C 0.113 3.887 21 O -0.222 6.222 22 C -0.067 4.067 23 C -0.310 4.310 24 C 0.110 3.890 25 O -0.228 6.228 26 C -0.067 4.067 27 C -0.187 4.187 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.018 0.982 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.262 0.738 37 H 0.165 0.835 38 H 0.116 0.884 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.148 0.852 42 H 0.116 0.884 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.182 7.323 13.219 15.158 hybrid contribution -0.054 -0.015 -0.532 0.535 sum 1.128 7.309 12.687 14.684 Atomic orbital electron populations 1.22463 0.99181 1.01575 1.02040 1.22156 0.92034 0.90712 1.02749 1.62354 1.58363 1.01640 1.01060 1.19920 0.94921 0.94966 0.83638 1.21111 1.25213 1.16209 0.91368 0.91720 1.24936 0.95591 0.95099 0.98805 1.69976 1.37366 1.24052 1.22219 0.86476 0.79762 0.79130 0.82279 1.19607 1.21230 1.21134 1.19972 0.98846 0.90194 0.88484 0.90469 1.23358 0.81542 0.78235 0.84240 1.90691 1.24113 1.38452 1.84111 1.84568 1.54994 1.71365 1.22250 1.18690 0.92627 0.92134 0.96678 1.20301 0.95452 0.95126 1.04132 1.18653 0.82652 0.93430 0.94014 1.86130 1.22443 1.28388 1.85268 1.23008 1.00652 0.82079 1.00943 1.21177 0.94359 0.99143 1.16297 1.18454 0.88284 0.87349 0.94884 1.86061 1.37078 1.14033 1.85651 1.23006 0.99783 0.82490 1.01378 1.20072 1.00680 0.88936 1.09030 0.93742 0.91023 0.92859 0.89024 0.92280 0.98192 0.93987 0.93098 0.73832 0.83455 0.88369 0.92780 0.93130 0.85193 0.88408 0.93002 0.92717 0.85026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.36 9.24 37.16 0.34 -3.02 16 2 C 0.05 1.01 5.53 -3.82 -0.02 0.99 16 3 N -0.51 -10.93 3.76 -230.87 -0.87 -11.80 16 4 C 0.19 4.78 4.30 -4.98 -0.02 4.76 16 5 C -0.50 -13.84 8.53 -34.44 -0.29 -14.13 16 6 H 0.06 1.80 7.23 -52.48 -0.38 1.42 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.36 13.29 55.43 0.74 -25.63 16 9 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.14 2.52 1.71 -70.01 -0.12 2.40 16 14 H 0.08 1.37 6.19 -51.93 -0.32 1.05 16 15 C 0.49 8.30 6.38 36.01 0.23 8.53 16 16 O -0.49 -9.51 16.26 -18.75 -0.30 -9.81 16 17 O -0.52 -6.85 13.42 -39.25 -0.53 -7.37 16 18 C 0.00 -0.01 3.39 -104.67 -0.35 -0.36 16 19 C -0.13 -2.60 8.59 -39.41 -0.34 -2.94 16 20 C 0.16 2.83 6.68 -39.24 -0.26 2.57 16 21 O -0.31 -5.17 10.50 -19.42 -0.20 -5.38 16 22 C 0.03 0.32 9.81 101.05 0.99 1.31 16 23 C -0.29 -4.56 8.02 -39.29 -0.32 -4.87 16 24 C 0.16 2.55 6.68 -39.23 -0.26 2.29 16 25 O -0.31 -4.58 10.50 -19.40 -0.20 -4.78 16 26 C 0.03 0.28 9.81 101.05 0.99 1.27 16 27 C -0.17 -2.92 9.60 -39.41 -0.38 -3.30 16 28 H 0.04 0.71 6.45 -51.93 -0.33 0.37 16 29 H 0.07 1.39 6.32 -51.92 -0.33 1.07 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 1.92 6.90 -51.93 -0.36 1.56 16 32 H 0.06 1.10 6.32 -51.93 -0.33 0.78 16 33 H 0.00 0.01 6.04 -51.93 -0.31 -0.30 16 34 H 0.04 1.15 6.24 -51.93 -0.32 0.83 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.40 3.35 9.10 45.56 0.41 3.77 16 37 H 0.15 3.20 7.87 -52.49 -0.41 2.79 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 40 H 0.05 0.47 7.66 -51.93 -0.40 0.08 16 41 H 0.13 1.63 4.54 -52.49 -0.24 1.39 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 44 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 45 H 0.13 2.08 7.99 -52.49 -0.42 1.66 16 LS Contribution 366.90 15.07 5.53 5.53 Total: -1.00 -33.64 366.90 -6.11 -39.75 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.34 Total: 5.73 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 0.09 Total: -3.00 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: -0.13 Total: -37.42 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -1.24 Total: -27.34 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.64 -6.11 -39.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829693164.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.959 kcal (2) G-P(sol) polarization free energy of solvation -33.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds