Wall clock time and date at job start Tue Mar 31 2020 13:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46905 * 109.47083 * 2 1 4 4 C 1.46892 * 111.00243 * 295.37589 * 3 2 1 5 5 C 1.50700 * 109.47057 * 291.02455 * 4 3 2 6 6 H 1.08005 * 120.00174 * 2.85814 * 5 4 3 7 7 C 1.37874 * 120.00240 * 182.85707 * 5 4 3 8 8 N 1.31519 * 119.99879 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00071 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47367 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46892 * 120.00585 * 9 7 5 12 12 H 1.48498 * 109.46886 * 239.99880 * 9 7 5 13 13 C 1.46899 * 110.99924 * 59.33227 * 3 2 1 14 14 H 1.09003 * 109.46777 * 298.30907 * 13 3 2 15 15 C 1.50703 * 109.47701 * 58.31129 * 13 3 2 16 16 O 1.20828 * 119.99667 * 29.02349 * 15 13 3 17 17 O 1.34228 * 120.00210 * 209.03407 * 15 13 3 18 18 C 1.50703 * 109.47193 * 178.31578 * 13 3 2 19 19 C 1.38179 * 119.94185 * 314.81282 * 18 13 3 20 20 C 1.38769 * 120.05347 * 180.23045 * 19 18 13 21 21 O 1.35897 * 120.02959 * 179.79452 * 20 19 18 22 22 C 1.42900 * 117.00249 * 179.72875 * 21 20 19 23 23 C 1.38632 * 119.94638 * 359.52280 * 20 19 18 24 24 C 1.38641 * 119.88963 * 0.24797 * 23 20 19 25 25 O 1.35893 * 120.02912 * 180.02562 * 24 23 20 26 26 C 1.42902 * 117.00110 * 359.97438 * 25 24 23 27 27 C 1.38173 * 119.94672 * 134.59053 * 18 13 3 28 28 H 1.09000 * 109.47349 * 299.64851 * 1 2 3 29 29 H 1.09010 * 109.46718 * 59.63818 * 1 2 3 30 30 H 1.08994 * 109.47382 * 179.63597 * 1 2 3 31 31 H 1.08997 * 109.47579 * 240.00398 * 2 1 3 32 32 H 1.09001 * 109.46670 * 119.99708 * 2 1 3 33 33 H 1.09003 * 109.47448 * 51.02318 * 4 3 2 34 34 H 1.08997 * 109.47511 * 171.02720 * 4 3 2 35 35 H 0.97000 * 119.99580 * 179.97438 * 8 7 5 36 36 H 0.96702 * 116.99737 * 179.97438 * 17 15 13 37 37 H 1.08001 * 119.97302 * 0.03063 * 19 18 13 38 38 H 1.08995 * 109.47321 * 180.02562 * 22 21 20 39 39 H 1.08999 * 109.46747 * 299.99970 * 22 21 20 40 40 H 1.09000 * 109.47078 * 59.99456 * 22 21 20 41 41 H 1.07995 * 120.05781 * 180.23055 * 23 20 19 42 42 H 1.08995 * 109.47390 * 179.97438 * 26 25 24 43 43 H 1.09005 * 109.47089 * 300.00549 * 26 25 24 44 44 H 1.09004 * 109.46998 * 59.99847 * 26 25 24 45 45 H 1.07993 * 119.97305 * 359.97438 * 27 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6411 2.0773 -1.2390 5 6 2.4089 1.4920 -2.3962 6 1 3.0736 0.6560 -2.2356 7 6 2.2629 2.0237 -3.6598 8 7 1.4538 3.0420 -3.8553 9 14 3.2141 1.2978 -5.0943 10 1 4.0486 0.1674 -4.6135 11 1 2.2614 0.8070 -6.1223 12 1 4.0880 2.3416 -5.6876 13 6 1.5356 2.1145 1.1796 14 1 0.4465 2.1550 1.1601 15 6 1.9896 1.4060 2.4298 16 8 3.0140 0.7653 2.4229 17 8 1.2558 1.4864 3.5509 18 6 2.0907 3.5155 1.1666 19 6 3.4260 3.7257 0.8800 20 6 3.9406 5.0145 0.8720 21 8 5.2548 5.2203 0.5942 22 6 5.7146 6.5733 0.5977 23 6 3.1116 6.0923 1.1421 24 6 1.7711 5.8792 1.4247 25 8 0.9559 6.9337 1.6894 26 6 1.5472 8.2343 1.6599 27 6 1.2625 4.5881 1.4366 28 1 -0.3634 0.5084 0.8931 29 1 -0.3633 0.5195 -0.8868 30 1 -0.3634 -1.0276 -0.0065 31 1 1.8934 -0.5137 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 0.5721 1.9533 -1.4125 34 1 1.8737 3.1383 -1.1482 35 1 1.3514 3.4163 -4.7444 36 1 1.5874 1.0148 4.3273 37 1 4.0704 2.8861 0.6652 38 1 6.7783 6.5962 0.3611 39 1 5.1642 7.1459 -0.1488 40 1 5.5516 7.0098 1.5831 41 1 3.5094 7.0963 1.1328 42 1 0.7889 8.9835 1.8874 43 1 2.3450 8.2876 2.4008 44 1 1.9589 8.4239 0.6686 45 1 0.2183 4.4216 1.6564 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829693164.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:23 Heat of formation + Delta-G solvation = -144.972967 kcal Electronic energy + Delta-G solvation = -28922.281210 eV Core-core repulsion = 24905.474366 eV Total energy + Delta-G solvation = -4016.806844 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.99597 -41.18445 -39.77286 -39.10345 -37.40096 -36.95188 -34.72158 -32.85478 -31.34433 -30.70525 -29.64374 -28.63666 -27.48211 -27.10326 -25.05470 -23.47644 -23.44959 -22.49688 -20.75086 -19.46203 -19.11439 -18.40157 -17.98832 -17.40587 -17.13420 -17.06780 -16.96676 -16.81708 -16.46176 -16.38180 -16.10302 -15.64235 -15.48245 -14.84863 -14.52409 -14.21155 -14.08995 -13.98522 -13.64113 -13.33897 -13.17523 -13.11260 -12.84924 -12.70967 -12.65916 -12.57683 -12.45954 -12.42472 -12.21558 -12.15241 -11.98193 -11.73245 -11.60625 -11.29308 -11.16976 -10.55556 -9.63761 -9.04384 -8.98711 -8.15263 -6.22155 0.13722 0.45938 1.16948 1.40429 1.41897 1.54720 1.91440 2.24838 2.34945 2.43618 2.67095 3.16925 3.29781 3.57160 3.92157 3.99100 4.07260 4.09611 4.19333 4.32484 4.34318 4.35285 4.36969 4.39352 4.42170 4.48547 4.58554 4.64491 4.69789 4.74179 4.88156 4.98295 5.14714 5.17395 5.22507 5.35273 5.45720 5.48683 5.53675 5.58858 5.69836 6.06904 6.20481 6.28718 6.51314 6.51645 6.90397 7.04278 7.44972 8.95466 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008807 B = 0.005645 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3178.523692 B = 4958.722431 C = 6500.064510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.052 3.948 3 N -0.521 5.521 4 C 0.212 3.788 5 C -0.514 4.514 6 H 0.056 0.944 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.960 3.040 10 H -0.268 1.268 11 H -0.277 1.277 12 H -0.282 1.282 13 C 0.132 3.868 14 H 0.087 0.913 15 C 0.499 3.501 16 O -0.518 6.518 17 O -0.504 6.504 18 C -0.010 4.010 19 C -0.163 4.163 20 C 0.152 3.848 21 O -0.335 6.335 22 C 0.016 3.984 23 C -0.284 4.284 24 C 0.160 3.840 25 O -0.325 6.325 26 C 0.015 3.985 27 C -0.182 4.182 28 H 0.059 0.941 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.070 0.930 33 H -0.017 1.017 34 H 0.016 0.984 35 H 0.262 0.738 36 H 0.429 0.571 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.164 0.836 42 H 0.126 0.874 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.499 8.518 14.724 17.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.076 4.076 3 N -0.246 5.246 4 C 0.087 3.913 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.190 4.190 8 N -0.569 5.569 9 Si 0.785 3.215 10 H -0.192 1.192 11 H -0.203 1.203 12 H -0.208 1.208 13 C 0.022 3.978 14 H 0.105 0.895 15 C 0.340 3.660 16 O -0.405 6.405 17 O -0.318 6.318 18 C -0.011 4.011 19 C -0.183 4.183 20 C 0.106 3.894 21 O -0.248 6.248 22 C -0.078 4.078 23 C -0.303 4.303 24 C 0.114 3.886 25 O -0.238 6.238 26 C -0.079 4.079 27 C -0.202 4.202 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.001 0.999 34 H 0.034 0.966 35 H 0.071 0.929 36 H 0.291 0.709 37 H 0.133 0.867 38 H 0.139 0.861 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.182 0.818 42 H 0.144 0.856 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.049 8.521 14.292 16.672 hybrid contribution -0.010 -0.259 -0.734 0.779 sum 1.039 8.261 13.558 15.911 Atomic orbital electron populations 1.22337 0.97224 1.03092 1.01474 1.22137 0.93670 0.89549 1.02233 1.62135 1.59283 1.02400 1.00807 1.19444 0.93315 0.93601 0.84933 1.21384 1.25174 1.16020 0.92636 0.92550 1.25728 0.96464 0.95444 1.01388 1.70085 1.38676 1.25228 1.22916 0.85475 0.78532 0.78419 0.79047 1.19195 1.20264 1.20778 1.19974 0.99232 0.90306 0.88277 0.89536 1.22871 0.81087 0.77343 0.84694 1.90687 1.25320 1.39771 1.84749 1.84486 1.53873 1.71287 1.22142 1.18743 0.92528 0.92622 0.97225 1.20170 0.95814 0.95370 1.06925 1.18738 0.83569 0.93301 0.93763 1.86099 1.21852 1.31747 1.85123 1.23399 1.01944 0.79817 1.02610 1.21427 0.93840 1.00035 1.15048 1.18557 0.88681 0.87733 0.93670 1.86061 1.37486 1.15185 1.85108 1.23413 1.01486 0.80657 1.02336 1.20243 1.01094 0.89335 1.09495 0.92171 0.93602 0.90247 0.91096 0.91123 0.99939 0.96626 0.92912 0.70907 0.86674 0.86130 0.92128 0.90781 0.81822 0.85627 0.91147 0.92281 0.83863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.28 9.24 71.98 0.66 -5.61 16 2 C 0.05 2.07 5.53 86.30 0.48 2.55 16 3 N -0.52 -23.28 3.76 -884.35 -3.32 -26.60 16 4 C 0.21 11.22 4.30 85.56 0.37 11.58 16 5 C -0.51 -29.46 8.53 25.60 0.22 -29.24 16 6 H 0.06 3.25 7.23 -2.91 -0.02 3.23 16 7 C 0.01 0.45 5.46 84.65 0.46 0.91 16 8 N -0.93 -55.81 13.29 21.45 0.28 -55.52 16 9 Si 0.96 45.37 29.54 68.60 2.03 47.39 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 13 C 0.13 5.02 1.71 43.42 0.07 5.09 16 14 H 0.09 3.09 6.19 -2.39 -0.01 3.07 16 15 C 0.50 16.90 6.38 71.24 0.45 17.35 16 16 O -0.52 -20.30 16.26 21.96 0.36 -19.94 16 17 O -0.50 -12.31 13.42 -51.39 -0.69 -13.00 16 18 C -0.01 -0.40 3.39 -19.89 -0.07 -0.47 16 19 C -0.16 -6.82 8.59 22.38 0.19 -6.62 16 20 C 0.15 5.53 6.68 22.49 0.15 5.68 16 21 O -0.33 -11.24 10.50 -92.39 -0.97 -12.21 16 22 C 0.02 0.34 9.81 113.37 1.11 1.45 16 23 C -0.28 -8.58 8.02 22.46 0.18 -8.40 16 24 C 0.16 5.07 6.68 22.49 0.15 5.22 16 25 O -0.32 -8.77 10.50 -92.34 -0.97 -9.74 16 26 C 0.02 0.25 9.81 113.37 1.11 1.36 16 27 C -0.18 -6.37 9.60 22.38 0.21 -6.15 16 28 H 0.06 1.85 6.45 -2.39 -0.02 1.84 16 29 H 0.04 1.81 6.32 -2.38 -0.02 1.80 16 30 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.07 3.08 6.90 -2.39 -0.02 3.07 16 32 H 0.07 2.65 6.32 -2.39 -0.02 2.63 16 33 H -0.02 -0.94 6.04 -2.39 -0.01 -0.95 16 34 H 0.02 0.91 6.24 -2.39 -0.01 0.89 16 35 H 0.26 14.86 8.31 -92.71 -0.77 14.08 16 36 H 0.43 6.03 9.10 -74.06 -0.67 5.35 16 37 H 0.12 5.43 7.87 -2.91 -0.02 5.41 16 38 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.06 1.17 7.66 -2.39 -0.02 1.15 16 40 H 0.07 1.18 7.66 -2.39 -0.02 1.16 16 41 H 0.16 3.63 4.54 -2.91 -0.01 3.62 16 42 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.07 0.93 7.66 -2.38 -0.02 0.91 16 44 H 0.06 0.95 7.66 -2.38 -0.02 0.93 16 45 H 0.14 4.49 7.99 -2.91 -0.02 4.46 16 Total: -1.00 -75.53 366.90 2.84 -72.69 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 0.36 Total: 22.21 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: 5.76 Total: -5.30 kcal Atomic # 7 Polarization: -79.08 SS G_CDS: -3.04 Total: -82.12 kcal Atomic # 8 Polarization: -52.61 SS G_CDS: -2.27 Total: -54.88 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -75.53 2.84 -72.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829693164.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.283 kcal (2) G-P(sol) polarization free energy of solvation -75.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds