Wall clock time and date at job start Tue Mar 31 2020 14:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46768 * 184.22240 * 3 2 1 5 5 N 1.46902 * 109.47206 * 179.28786 * 4 3 2 6 6 C 1.46901 * 111.00033 * 287.73579 * 5 4 3 7 7 C 1.50700 * 109.47160 * 160.36561 * 6 5 4 8 8 H 1.07999 * 120.00366 * 4.90292 * 7 6 5 9 9 C 1.37883 * 119.99501 * 184.90214 * 7 6 5 10 10 N 1.31516 * 119.99684 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00345 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47042 * 89.99911 * 11 9 7 13 13 H 1.48493 * 109.47405 * 210.00083 * 11 9 7 14 14 H 1.48498 * 109.47101 * 330.00097 * 11 9 7 15 15 C 1.46892 * 111.00371 * 163.77848 * 5 4 3 16 16 C 1.50705 * 109.47350 * 293.95520 * 15 5 4 17 17 O 1.21282 * 119.99794 * 359.97438 * 16 15 5 18 18 N 1.34768 * 120.00298 * 179.97438 * 16 15 5 19 19 C 1.46931 * 120.63170 * 359.71586 * 18 16 15 20 20 C 1.52754 * 109.01036 * 233.58516 * 19 18 16 21 21 C 1.53040 * 109.38381 * 305.58863 * 20 19 18 22 22 C 1.50703 * 109.44960 * 181.25336 * 21 20 19 23 23 O 1.20823 * 119.99955 * 239.94217 * 22 21 20 24 24 O 1.34228 * 119.99923 * 59.93867 * 22 21 20 25 25 C 1.53043 * 109.53922 * 61.24084 * 21 20 19 26 26 C 1.46929 * 120.63263 * 179.97438 * 18 16 15 27 27 H 1.08998 * 109.47677 * 64.21608 * 3 2 1 28 28 H 1.09003 * 109.47077 * 304.21635 * 3 2 1 29 29 H 1.08995 * 109.47689 * 59.28922 * 4 3 2 30 30 H 1.09000 * 109.47100 * 299.28331 * 4 3 2 31 31 H 1.09002 * 109.46528 * 280.36154 * 6 5 4 32 32 H 1.08996 * 109.47033 * 40.36320 * 6 5 4 33 33 H 0.96995 * 120.00086 * 180.02562 * 10 9 7 34 34 H 1.09003 * 109.47263 * 53.95171 * 15 5 4 35 35 H 1.09000 * 109.47313 * 173.95385 * 15 5 4 36 36 H 1.08993 * 109.58489 * 353.42434 * 19 18 16 37 37 H 1.09001 * 109.58658 * 113.84485 * 19 18 16 38 38 H 1.08994 * 109.56548 * 185.55450 * 20 19 18 39 39 H 1.09000 * 109.36075 * 65.49833 * 20 19 18 40 40 H 1.08998 * 109.46293 * 301.21738 * 21 20 19 41 41 H 0.96699 * 117.00169 * 180.02562 * 24 22 21 42 42 H 1.09005 * 109.49541 * 178.68491 * 25 21 20 43 43 H 1.09001 * 109.52521 * 58.60309 * 25 21 20 44 44 H 1.08995 * 109.58751 * 246.15374 * 26 18 16 45 45 H 1.09000 * 109.58251 * 6.44105 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1172 1.4395 0.1062 5 7 4.5861 1.4390 0.1234 6 6 5.0975 0.9313 1.4035 7 6 6.5288 0.4913 1.2337 8 1 7.0354 0.6525 0.2937 9 6 7.1915 -0.1171 2.2786 10 7 8.4404 -0.5016 2.1303 11 14 6.3154 -0.3953 3.9048 12 1 5.6447 -1.7200 3.8854 13 1 7.3037 -0.3571 5.0124 14 1 5.3013 0.6700 4.1093 15 6 5.1164 2.7790 -0.1611 16 6 4.7746 3.1644 -1.5774 17 8 4.1510 2.3979 -2.2806 18 7 5.1618 4.3607 -2.0624 19 6 5.9124 5.3024 -1.2206 20 6 5.1950 6.6511 -1.2213 21 6 4.9950 7.1193 -2.6645 22 6 4.3149 8.4641 -2.6660 23 8 3.2452 8.5995 -3.2112 24 8 4.8975 9.5115 -2.0617 25 6 4.1259 6.1076 -3.4151 26 6 4.8365 4.7503 -3.4413 27 1 2.9716 -0.4462 -0.9253 28 1 2.9715 -0.5771 0.8498 29 1 2.7433 1.8904 1.0254 30 1 2.7641 2.0140 -0.7501 31 1 5.0466 1.7205 2.1537 32 1 4.4926 0.0839 1.7259 33 1 8.9065 -0.9300 2.8652 34 1 4.6742 3.4986 0.5280 35 1 6.1993 2.7752 -0.0369 36 1 5.9659 4.9191 -0.2018 37 1 6.9190 5.4270 -1.6197 38 1 5.7945 7.3836 -0.6810 39 1 4.2250 6.5446 -0.7356 40 1 5.9638 7.2018 -3.1571 41 1 4.4230 10.3537 -2.0887 42 1 3.9645 6.4534 -4.4361 43 1 3.1657 6.0061 -2.9093 44 1 5.7537 4.8290 -4.0248 45 1 4.1823 4.0014 -3.8878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833065694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:55 Heat of formation + Delta-G solvation = -90.934739 kcal Electronic energy + Delta-G solvation = -27656.341594 eV Core-core repulsion = 23674.170775 eV Total energy + Delta-G solvation = -3982.170820 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.98690 -39.94472 -37.87642 -36.85558 -36.44981 -35.90123 -33.30702 -32.65658 -31.72018 -31.02684 -28.64841 -27.01457 -25.74290 -23.50870 -23.01202 -22.70258 -21.00074 -20.14983 -18.96492 -18.41138 -17.44252 -17.25359 -16.95244 -16.68861 -15.99548 -15.82554 -15.43493 -15.12561 -14.55970 -14.32245 -14.23339 -14.09580 -13.97548 -13.72360 -13.34239 -13.16062 -12.96216 -12.68072 -12.54360 -12.44756 -12.17768 -12.04344 -11.91691 -11.87022 -11.57701 -11.49774 -11.19097 -11.08651 -11.01436 -10.90998 -10.76394 -10.60319 -10.36192 -10.02377 -9.44627 -9.29532 -8.68444 -8.64191 -7.57426 -6.13070 -4.11419 1.82630 2.61627 2.89241 2.92338 2.99485 3.02611 3.22391 3.30137 3.31985 4.12181 4.18264 4.27838 4.34075 4.54078 4.63021 4.79484 4.92101 4.99304 5.00201 5.16823 5.19437 5.29310 5.35514 5.36152 5.42580 5.48978 5.54868 5.69270 5.70744 5.77001 5.82675 5.90742 5.94684 6.12787 6.18686 6.26916 6.49013 6.60960 6.73427 7.34864 7.47475 7.51409 7.69854 7.78740 7.80547 8.41443 8.54448 8.96603 9.47893 10.99793 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011478 B = 0.003386 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.769719 B = 8266.994767 C = 9751.602964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.222 3.778 3 C -0.025 4.025 4 C 0.057 3.943 5 N -0.508 5.508 6 C 0.159 3.841 7 C -0.511 4.511 8 H 0.082 0.918 9 C 0.072 3.928 10 N -0.896 5.896 11 Si 0.870 3.130 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.268 1.268 15 C 0.048 3.952 16 C 0.519 3.481 17 O -0.520 6.520 18 N -0.623 5.623 19 C 0.108 3.892 20 C -0.127 4.127 21 C -0.079 4.079 22 C 0.483 3.517 23 O -0.514 6.514 24 O -0.516 6.516 25 C -0.119 4.119 26 C 0.114 3.886 27 H 0.121 0.879 28 H 0.111 0.889 29 H 0.028 0.972 30 H 0.085 0.915 31 H -0.007 1.007 32 H 0.032 0.968 33 H 0.264 0.736 34 H 0.053 0.947 35 H 0.120 0.880 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.113 0.887 41 H 0.409 0.591 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.198 17.855 -7.128 19.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.096 4.096 3 C -0.065 4.065 4 C -0.073 4.073 5 N -0.232 5.232 6 C 0.034 3.966 7 C -0.549 4.549 8 H 0.100 0.900 9 C -0.131 4.131 10 N -0.535 5.535 11 Si 0.697 3.303 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.192 1.192 15 C -0.083 4.083 16 C 0.308 3.692 17 O -0.394 6.394 18 N -0.360 5.360 19 C -0.015 4.015 20 C -0.166 4.166 21 C -0.098 4.098 22 C 0.325 3.675 23 O -0.402 6.402 24 O -0.328 6.328 25 C -0.157 4.157 26 C -0.009 4.009 27 H 0.139 0.861 28 H 0.129 0.871 29 H 0.046 0.954 30 H 0.103 0.897 31 H 0.011 0.989 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.137 0.863 36 H 0.116 0.884 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.131 0.869 41 H 0.268 0.732 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.006 16.649 -7.905 19.098 hybrid contribution -0.380 1.059 1.582 1.941 sum -5.386 17.708 -6.322 19.559 Atomic orbital electron populations 1.81145 1.13233 1.09255 1.10171 1.29434 0.95455 0.92530 0.92173 1.19327 0.80079 1.00265 1.06844 1.22020 0.89811 0.94628 1.00795 1.61541 1.04660 1.20694 1.36275 1.20325 0.97234 0.94525 0.84543 1.20983 0.94309 1.38840 1.00784 0.90007 1.24879 0.94738 0.95146 0.98300 1.69881 1.10390 1.40746 1.32490 0.86952 0.79855 0.79252 0.84226 1.20019 1.21207 1.19249 1.21932 1.03718 0.91331 0.91346 1.20996 0.78093 0.80016 0.90101 1.90645 1.39195 1.49651 1.59933 1.48193 1.57331 1.17104 1.13328 1.21658 0.94965 0.88125 0.96758 1.21889 1.02777 0.98012 0.93903 1.21093 1.00956 0.87965 0.99773 1.23582 0.83518 0.86541 0.73887 1.90735 1.22260 1.84970 1.42245 1.84542 1.54176 1.21894 1.72138 1.21877 0.98946 0.93612 1.01299 1.21523 1.00327 0.95607 0.83407 0.86137 0.87138 0.95389 0.89686 0.98946 0.95035 0.92569 0.92975 0.86259 0.88398 0.90561 0.89018 0.90794 0.86892 0.73196 0.89841 0.90509 0.91337 0.88232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.02 18.54 42.15 0.78 -7.23 16 2 C 0.22 3.41 15.43 -20.76 -0.32 3.09 16 3 C -0.02 -0.36 5.78 -29.52 -0.17 -0.53 16 4 C 0.06 0.90 4.47 -3.82 -0.02 0.88 16 5 N -0.51 -9.23 4.12 -237.52 -0.98 -10.21 16 6 C 0.16 3.32 3.65 -4.98 -0.02 3.30 16 7 C -0.51 -12.95 9.17 -34.44 -0.32 -13.27 16 8 H 0.08 2.29 7.89 -52.49 -0.41 1.88 16 9 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 10 N -0.90 -25.61 13.96 55.43 0.77 -24.84 16 11 Si 0.87 19.69 27.37 -169.99 -4.65 15.04 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 13 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 14 H -0.27 -5.75 6.69 56.52 0.38 -5.38 16 15 C 0.05 0.74 3.62 -4.98 -0.02 0.72 16 16 C 0.52 7.72 7.26 -10.99 -0.08 7.64 16 17 O -0.52 -9.31 13.90 5.56 0.08 -9.24 16 18 N -0.62 -6.96 2.98 -173.01 -0.52 -7.47 16 19 C 0.11 0.88 6.31 -3.93 -0.02 0.86 16 20 C -0.13 -0.88 5.28 -26.84 -0.14 -1.02 16 21 C -0.08 -0.56 2.59 -91.73 -0.24 -0.80 16 22 C 0.48 4.04 7.63 36.01 0.27 4.32 16 23 O -0.51 -6.05 16.74 -18.75 -0.31 -6.37 16 24 O -0.52 -3.11 13.30 -39.25 -0.52 -3.63 16 25 C -0.12 -1.02 4.65 -26.59 -0.12 -1.14 16 26 C 0.11 1.11 6.44 -3.69 -0.02 1.08 16 27 H 0.12 1.70 8.14 -51.93 -0.42 1.28 16 28 H 0.11 1.56 6.53 -51.93 -0.34 1.22 16 29 H 0.03 0.42 8.05 -51.93 -0.42 0.00 16 30 H 0.08 1.37 5.81 -51.93 -0.30 1.07 16 31 H -0.01 -0.15 7.40 -51.93 -0.38 -0.53 16 32 H 0.03 0.65 5.41 -51.93 -0.28 0.37 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.05 0.70 7.66 -51.93 -0.40 0.30 16 35 H 0.12 1.96 7.13 -51.93 -0.37 1.59 16 36 H 0.10 0.80 5.93 -51.93 -0.31 0.50 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.51 8.08 -51.93 -0.42 0.09 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.41 0.93 9.10 45.56 0.41 1.34 16 42 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 43 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.10 1.15 7.00 -51.93 -0.36 0.78 16 LS Contribution 370.77 15.07 5.59 5.59 Total: -1.00 -34.04 370.77 -6.77 -40.81 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -5.70 Total: 0.61 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -1.31 Total: 6.94 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: 0.06 Total: -49.75 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.76 Total: -19.24 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.65 Total: 15.04 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.04 -6.77 -40.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833065694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.126 kcal (2) G-P(sol) polarization free energy of solvation -34.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds