Wall clock time and date at job start Tue Mar 31 2020 14:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46768 * 184.22240 * 3 2 1 5 5 N 1.46902 * 109.47206 * 179.28786 * 4 3 2 6 6 C 1.46901 * 111.00033 * 287.73579 * 5 4 3 7 7 C 1.50700 * 109.47160 * 160.36561 * 6 5 4 8 8 H 1.07999 * 120.00366 * 4.90292 * 7 6 5 9 9 C 1.37883 * 119.99501 * 184.90214 * 7 6 5 10 10 N 1.31516 * 119.99684 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00345 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47042 * 89.99911 * 11 9 7 13 13 H 1.48493 * 109.47405 * 210.00083 * 11 9 7 14 14 H 1.48498 * 109.47101 * 330.00097 * 11 9 7 15 15 C 1.46892 * 111.00371 * 163.77848 * 5 4 3 16 16 C 1.50705 * 109.47350 * 293.95520 * 15 5 4 17 17 O 1.21282 * 119.99794 * 359.97438 * 16 15 5 18 18 N 1.34768 * 120.00298 * 179.97438 * 16 15 5 19 19 C 1.46931 * 120.63170 * 359.71586 * 18 16 15 20 20 C 1.52754 * 109.01036 * 233.58516 * 19 18 16 21 21 C 1.53040 * 109.38381 * 305.58863 * 20 19 18 22 22 C 1.50703 * 109.44960 * 181.25336 * 21 20 19 23 23 O 1.20823 * 119.99955 * 239.94217 * 22 21 20 24 24 O 1.34228 * 119.99923 * 59.93867 * 22 21 20 25 25 C 1.53043 * 109.53922 * 61.24084 * 21 20 19 26 26 C 1.46929 * 120.63263 * 179.97438 * 18 16 15 27 27 H 1.08998 * 109.47677 * 64.21608 * 3 2 1 28 28 H 1.09003 * 109.47077 * 304.21635 * 3 2 1 29 29 H 1.08995 * 109.47689 * 59.28922 * 4 3 2 30 30 H 1.09000 * 109.47100 * 299.28331 * 4 3 2 31 31 H 1.09002 * 109.46528 * 280.36154 * 6 5 4 32 32 H 1.08996 * 109.47033 * 40.36320 * 6 5 4 33 33 H 0.96995 * 120.00086 * 180.02562 * 10 9 7 34 34 H 1.09003 * 109.47263 * 53.95171 * 15 5 4 35 35 H 1.09000 * 109.47313 * 173.95385 * 15 5 4 36 36 H 1.08993 * 109.58489 * 353.42434 * 19 18 16 37 37 H 1.09001 * 109.58658 * 113.84485 * 19 18 16 38 38 H 1.08994 * 109.56548 * 185.55450 * 20 19 18 39 39 H 1.09000 * 109.36075 * 65.49833 * 20 19 18 40 40 H 1.08998 * 109.46293 * 301.21738 * 21 20 19 41 41 H 0.96699 * 117.00169 * 180.02562 * 24 22 21 42 42 H 1.09005 * 109.49541 * 178.68491 * 25 21 20 43 43 H 1.09001 * 109.52521 * 58.60309 * 25 21 20 44 44 H 1.08995 * 109.58751 * 246.15374 * 26 18 16 45 45 H 1.09000 * 109.58251 * 6.44105 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1172 1.4395 0.1062 5 7 4.5861 1.4390 0.1234 6 6 5.0975 0.9313 1.4035 7 6 6.5288 0.4913 1.2337 8 1 7.0354 0.6525 0.2937 9 6 7.1915 -0.1171 2.2786 10 7 8.4404 -0.5016 2.1303 11 14 6.3154 -0.3953 3.9048 12 1 5.6447 -1.7200 3.8854 13 1 7.3037 -0.3571 5.0124 14 1 5.3013 0.6700 4.1093 15 6 5.1164 2.7790 -0.1611 16 6 4.7746 3.1644 -1.5774 17 8 4.1510 2.3979 -2.2806 18 7 5.1618 4.3607 -2.0624 19 6 5.9124 5.3024 -1.2206 20 6 5.1950 6.6511 -1.2213 21 6 4.9950 7.1193 -2.6645 22 6 4.3149 8.4641 -2.6660 23 8 3.2452 8.5995 -3.2112 24 8 4.8975 9.5115 -2.0617 25 6 4.1259 6.1076 -3.4151 26 6 4.8365 4.7503 -3.4413 27 1 2.9716 -0.4462 -0.9253 28 1 2.9715 -0.5771 0.8498 29 1 2.7433 1.8904 1.0254 30 1 2.7641 2.0140 -0.7501 31 1 5.0466 1.7205 2.1537 32 1 4.4926 0.0839 1.7259 33 1 8.9065 -0.9300 2.8652 34 1 4.6742 3.4986 0.5280 35 1 6.1993 2.7752 -0.0369 36 1 5.9659 4.9191 -0.2018 37 1 6.9190 5.4270 -1.6197 38 1 5.7945 7.3836 -0.6810 39 1 4.2250 6.5446 -0.7356 40 1 5.9638 7.2018 -3.1571 41 1 4.4230 10.3537 -2.0887 42 1 3.9645 6.4534 -4.4361 43 1 3.1657 6.0061 -2.9093 44 1 5.7537 4.8290 -4.0248 45 1 4.1823 4.0014 -3.8878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833065694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:54 Heat of formation + Delta-G solvation = -115.361672 kcal Electronic energy + Delta-G solvation = -27657.400826 eV Core-core repulsion = 23674.170775 eV Total energy + Delta-G solvation = -3983.230051 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.71444 -40.92272 -38.95404 -37.97165 -37.25677 -37.08336 -34.58053 -34.18067 -32.66267 -32.12767 -30.20832 -28.11554 -26.81507 -24.57695 -24.23020 -23.52494 -22.10625 -21.19670 -19.92041 -19.03003 -18.89079 -18.48794 -18.33071 -17.49762 -16.83863 -16.80380 -16.53303 -16.40897 -15.86409 -15.65986 -15.33644 -15.04543 -14.84155 -14.68259 -14.47901 -14.31791 -14.17914 -14.02204 -13.78200 -13.53502 -13.36750 -13.23758 -12.98634 -12.82954 -12.58142 -12.54622 -12.37363 -12.25663 -12.21270 -11.85807 -11.80584 -11.71743 -11.62468 -11.43990 -11.35233 -10.65960 -10.53221 -9.60853 -8.96728 -8.15077 -6.17233 1.19415 1.46523 1.48646 1.56791 1.70339 1.72825 1.78593 1.98956 2.14503 2.45444 2.86105 3.19527 3.46689 3.56035 3.67246 3.78323 3.97259 4.05893 4.12397 4.21402 4.32296 4.41525 4.44025 4.46704 4.57321 4.64559 4.70745 4.75546 4.80581 4.88639 4.91474 5.01825 5.04855 5.08072 5.08957 5.15205 5.24920 5.61578 5.64585 5.66552 6.05549 6.22154 6.49371 6.55424 6.70412 6.90666 6.99988 7.30656 7.45998 9.01290 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011478 B = 0.003386 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.769719 B = 8266.994767 C = 9751.602964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C 0.245 3.755 3 C -0.018 4.018 4 C 0.062 3.938 5 N -0.527 5.527 6 C 0.168 3.832 7 C -0.505 4.505 8 H 0.040 0.960 9 C 0.013 3.987 10 N -0.949 5.949 11 Si 0.936 3.064 12 H -0.269 1.269 13 H -0.291 1.291 14 H -0.243 1.243 15 C 0.049 3.951 16 C 0.517 3.483 17 O -0.559 6.559 18 N -0.617 5.617 19 C 0.102 3.898 20 C -0.118 4.118 21 C -0.077 4.077 22 C 0.489 3.511 23 O -0.555 6.555 24 O -0.508 6.508 25 C -0.110 4.110 26 C 0.115 3.885 27 H 0.123 0.877 28 H 0.121 0.879 29 H 0.042 0.958 30 H 0.081 0.919 31 H 0.002 0.998 32 H 0.043 0.957 33 H 0.264 0.736 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.114 0.886 39 H 0.062 0.938 40 H 0.139 0.861 41 H 0.426 0.574 42 H 0.088 0.912 43 H 0.054 0.946 44 H 0.090 0.910 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.579 19.548 -6.139 20.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.172 5.172 2 C -0.072 4.072 3 C -0.058 4.058 4 C -0.067 4.067 5 N -0.251 5.251 6 C 0.041 3.959 7 C -0.543 4.543 8 H 0.058 0.942 9 C -0.184 4.184 10 N -0.590 5.590 11 Si 0.760 3.240 12 H -0.194 1.194 13 H -0.217 1.217 14 H -0.166 1.166 15 C -0.082 4.082 16 C 0.306 3.694 17 O -0.437 6.437 18 N -0.351 5.351 19 C -0.020 4.020 20 C -0.157 4.157 21 C -0.096 4.096 22 C 0.333 3.667 23 O -0.446 6.446 24 O -0.322 6.322 25 C -0.149 4.149 26 C -0.008 4.008 27 H 0.141 0.859 28 H 0.138 0.862 29 H 0.060 0.940 30 H 0.099 0.901 31 H 0.020 0.980 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.132 0.868 39 H 0.081 0.919 40 H 0.157 0.843 41 H 0.288 0.712 42 H 0.107 0.893 43 H 0.073 0.927 44 H 0.108 0.892 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.386 18.420 -6.918 20.400 hybrid contribution -0.174 0.649 1.164 1.344 sum -5.559 19.069 -5.754 20.679 Atomic orbital electron populations 1.81173 1.14218 1.10398 1.11422 1.29438 0.95272 0.91437 0.91040 1.19316 0.79284 0.99796 1.07410 1.21979 0.88158 0.95315 1.01253 1.61361 1.06251 1.22646 1.34880 1.20110 0.94528 0.95168 0.86059 1.21201 0.96460 1.37776 0.98886 0.94177 1.25719 0.95285 0.95158 1.02275 1.70045 1.12453 1.42725 1.33781 0.85892 0.78986 0.79970 0.79161 1.19427 1.21748 1.16601 1.21914 1.02886 0.90794 0.92585 1.20882 0.78016 0.80877 0.89653 1.90625 1.41249 1.51191 1.60616 1.48239 1.56339 1.16376 1.14179 1.21919 0.95701 0.87962 0.96422 1.21829 1.02418 0.97573 0.93831 1.21112 1.01536 0.86982 0.99935 1.23693 0.82750 0.87204 0.73008 1.90732 1.24016 1.85647 1.44168 1.84498 1.54001 1.22460 1.71197 1.21739 0.98050 0.93385 1.01682 1.21597 1.01005 0.95525 0.82631 0.85878 0.86161 0.94006 0.90114 0.97997 0.93922 0.92731 0.90484 0.87669 0.88393 0.88526 0.86782 0.91907 0.84307 0.71191 0.89316 0.92725 0.89158 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.65 18.54 20.01 0.37 -16.28 16 2 C 0.24 7.18 15.43 89.44 1.38 8.56 16 3 C -0.02 -0.48 5.78 28.79 0.17 -0.32 16 4 C 0.06 1.86 4.47 86.30 0.39 2.24 16 5 N -0.53 -18.65 4.12 -905.37 -3.73 -22.38 16 6 C 0.17 6.71 3.65 85.56 0.31 7.02 16 7 C -0.50 -25.71 9.17 25.60 0.23 -25.48 16 8 H 0.04 2.33 7.89 -2.91 -0.02 2.31 16 9 C 0.01 0.68 5.47 84.66 0.46 1.14 16 10 N -0.95 -55.39 13.96 21.45 0.30 -55.09 16 11 Si 0.94 39.66 27.37 68.60 1.88 41.54 16 12 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 13 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 14 H -0.24 -9.23 6.69 99.48 0.67 -8.56 16 15 C 0.05 1.48 3.62 85.56 0.31 1.79 16 16 C 0.52 15.23 7.26 87.66 0.64 15.87 16 17 O -0.56 -20.28 13.90 -3.04 -0.04 -20.32 16 18 N -0.62 -13.13 2.98 -819.67 -2.44 -15.57 16 19 C 0.10 1.44 6.31 86.22 0.54 1.98 16 20 C -0.12 -1.32 5.28 30.53 0.16 -1.16 16 21 C -0.08 -0.91 2.59 -11.51 -0.03 -0.94 16 22 C 0.49 7.21 7.63 71.24 0.54 7.76 16 23 O -0.55 -12.54 16.74 21.97 0.37 -12.18 16 24 O -0.51 -4.71 13.30 -51.39 -0.68 -5.39 16 25 C -0.11 -1.77 4.65 30.69 0.14 -1.63 16 26 C 0.11 2.12 6.44 86.38 0.56 2.68 16 27 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 28 H 0.12 3.10 6.53 -2.39 -0.02 3.08 16 29 H 0.04 1.14 8.05 -2.39 -0.02 1.12 16 30 H 0.08 2.53 5.81 -2.39 -0.01 2.51 16 31 H 0.00 0.09 7.40 -2.39 -0.02 0.07 16 32 H 0.04 1.63 5.41 -2.39 -0.01 1.62 16 33 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 34 H 0.08 1.92 7.66 -2.39 -0.02 1.90 16 35 H 0.11 3.47 7.13 -2.39 -0.02 3.45 16 36 H 0.10 1.41 5.93 -2.39 -0.01 1.40 16 37 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.11 0.83 8.08 -2.39 -0.02 0.81 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.43 0.85 9.10 -74.06 -0.67 0.18 16 42 H 0.09 1.35 8.07 -2.38 -0.02 1.33 16 43 H 0.05 1.13 8.13 -2.39 -0.02 1.11 16 44 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.08 1.81 7.00 -2.39 -0.02 1.80 16 Total: -1.00 -75.18 370.77 2.14 -73.04 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.31 Total: 13.10 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: 5.81 Total: 19.52 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -5.50 Total: -109.32 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -0.36 Total: -37.89 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 1.88 Total: 41.54 kcal Total: -75.18 2.14 -73.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833065694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.322 kcal (2) G-P(sol) polarization free energy of solvation -75.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds