Wall clock time and date at job start Tue Mar 31 2020 14:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47009 * 167.29060 * 3 2 1 5 5 N 1.46502 * 109.47419 * 179.97438 * 4 3 2 6 6 C 1.46495 * 119.99988 * 270.00303 * 5 4 3 7 7 C 1.50699 * 109.47088 * 269.99144 * 6 5 4 8 8 H 1.08003 * 120.00180 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00348 * 179.97438 * 7 6 5 10 10 N 1.31522 * 119.99673 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00161 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47169 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47208 * 120.00564 * 11 9 7 14 14 H 1.48500 * 109.47118 * 240.00128 * 11 9 7 15 15 C 1.34782 * 119.99748 * 89.99702 * 5 4 3 16 16 O 1.21281 * 119.99931 * 180.02562 * 15 5 4 17 17 C 1.50701 * 119.99678 * 0.02562 * 15 5 4 18 18 N 1.46901 * 109.46569 * 179.97438 * 17 15 5 19 19 C 1.46909 * 110.99840 * 179.58314 * 18 17 15 20 20 C 1.52995 * 112.84779 * 294.59865 * 19 18 17 21 21 C 1.50695 * 109.47288 * 294.33096 * 20 19 18 22 22 O 1.20829 * 119.99914 * 356.86901 * 21 20 19 23 23 O 1.34234 * 120.00517 * 176.86780 * 21 20 19 24 24 C 1.53774 * 113.68865 * 65.86577 * 19 18 17 25 25 C 1.53780 * 87.08289 * 89.12569 * 24 19 18 26 26 C 1.53781 * 87.08150 * 25.43234 * 25 24 19 27 27 H 1.08996 * 109.47669 * 47.28694 * 3 2 1 28 28 H 1.09007 * 109.47101 * 287.28638 * 3 2 1 29 29 H 1.09009 * 109.47340 * 59.99981 * 4 3 2 30 30 H 1.08994 * 109.47448 * 299.99962 * 4 3 2 31 31 H 1.08997 * 109.47763 * 29.99928 * 6 5 4 32 32 H 1.09006 * 109.47272 * 149.99802 * 6 5 4 33 33 H 0.96996 * 119.99821 * 179.97438 * 10 9 7 34 34 H 1.08995 * 109.47362 * 60.00195 * 17 15 5 35 35 H 1.08994 * 109.47232 * 299.99253 * 17 15 5 36 36 H 1.00897 * 111.00294 * 303.53290 * 18 17 15 37 37 H 1.08996 * 109.46902 * 174.33308 * 20 19 18 38 38 H 1.09002 * 109.47390 * 54.33251 * 20 19 18 39 39 H 0.96700 * 117.00594 * 179.97438 * 23 21 20 40 40 H 1.08996 * 113.61521 * 203.67666 * 24 19 18 41 41 H 1.09005 * 113.61675 * 334.58129 * 24 19 18 42 42 H 1.09001 * 113.61597 * 270.88457 * 25 24 19 43 43 H 1.09005 * 113.61395 * 139.97474 * 25 24 19 44 44 H 1.08993 * 113.61705 * 220.02232 * 26 25 24 45 45 H 1.08996 * 113.61744 * 89.11218 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.4080 -0.3174 5 7 4.5823 1.4089 -0.3168 6 6 5.3142 1.6886 0.9211 7 6 5.5645 3.1704 1.0327 8 1 5.2133 3.8373 0.2592 9 6 6.2412 3.6751 2.1229 10 7 6.6685 2.8632 3.0652 11 14 6.5509 5.5120 2.2616 12 1 5.9731 6.2020 1.0804 13 1 5.9121 6.0298 3.4982 14 1 8.0132 5.7647 2.3168 15 6 5.2568 1.1523 -1.4551 16 8 6.4696 1.1526 -1.4546 17 6 4.5038 0.8650 -2.7286 18 7 5.4590 0.6202 -3.8175 19 6 4.7594 0.3263 -5.0753 20 6 3.9681 -0.9822 -5.0233 21 6 4.9215 -2.1404 -4.8807 22 8 6.1139 -1.9452 -4.8832 23 8 4.4462 -3.3891 -4.7509 24 6 3.9511 1.5135 -5.6247 25 6 5.2274 1.9355 -6.3715 26 6 5.6509 0.4580 -6.3214 27 1 2.9717 -0.6962 -0.7550 28 1 2.9715 -0.3046 0.9813 29 1 2.7536 2.1050 0.4378 30 1 2.7539 1.7133 -1.2985 31 1 4.7250 1.3543 1.7750 32 1 6.2669 1.1592 0.9075 33 1 7.1448 3.2182 3.8320 34 1 3.8771 1.7203 -2.9810 35 1 3.8774 -0.0160 -2.5894 36 1 6.0891 1.4005 -3.9280 37 1 3.3932 -1.0959 -5.9422 38 1 3.2897 -0.9629 -4.1703 39 1 5.0963 -4.0995 -4.6628 40 1 3.1360 1.2184 -6.2855 41 1 3.6398 2.2223 -4.8574 42 1 5.8742 2.5949 -5.7927 43 1 5.0416 2.3023 -7.3810 44 1 6.7117 0.3145 -6.1164 45 1 5.3005 -0.1258 -7.1726 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833760542.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:48 Heat of formation + Delta-G solvation = -71.895282 kcal Electronic energy + Delta-G solvation = -28075.921481 eV Core-core repulsion = 24094.576274 eV Total energy + Delta-G solvation = -3981.345207 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.82287 -39.51718 -38.86163 -36.86914 -35.99711 -35.25039 -33.59530 -32.78532 -30.85209 -30.75522 -28.04799 -26.20727 -25.64317 -24.03077 -23.80953 -22.41936 -21.27234 -18.88108 -18.62010 -18.00072 -17.63129 -16.79266 -16.61011 -16.45058 -16.11363 -15.82130 -15.55889 -15.10018 -14.79999 -14.64606 -14.33962 -13.90944 -13.55124 -13.39921 -13.22005 -13.15633 -12.69253 -12.52135 -12.45917 -12.43376 -12.24217 -11.98556 -11.82272 -11.52533 -11.43250 -11.27664 -11.02161 -10.95143 -10.90071 -10.84638 -10.64423 -10.43809 -10.30207 -10.20033 -9.69706 -9.02548 -8.48161 -8.32342 -7.83900 -6.09433 -4.14077 2.29782 2.70738 2.78813 2.95919 3.27174 3.30173 3.35866 3.38608 3.51016 3.95836 4.25341 4.32410 4.38790 4.43708 4.46872 4.66330 4.93504 5.01186 5.05386 5.09530 5.17783 5.20568 5.26050 5.29918 5.35675 5.45312 5.46987 5.55612 5.60831 5.72652 5.81072 5.93412 6.01578 6.03944 6.08117 6.52015 6.82067 7.04782 7.34824 7.39316 7.43680 7.55102 7.86779 7.94834 8.16806 8.26646 8.84441 9.00266 9.51568 10.98739 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010829 B = 0.003834 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.136850 B = 7301.762010 C = 8464.845330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.217 3.783 3 C -0.051 4.051 4 C 0.118 3.882 5 N -0.599 5.599 6 C 0.245 3.755 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.062 3.938 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.506 3.494 16 O -0.515 6.515 17 C 0.033 3.967 18 N -0.636 5.636 19 C 0.107 3.893 20 C -0.094 4.094 21 C 0.474 3.526 22 O -0.482 6.482 23 O -0.529 6.529 24 C -0.171 4.171 25 C -0.146 4.146 26 C -0.123 4.123 27 H 0.105 0.895 28 H 0.118 0.882 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.034 0.966 32 H 0.047 0.953 33 H 0.263 0.737 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.358 0.642 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.407 0.593 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.052 -7.980 -17.511 20.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.101 4.101 3 C -0.093 4.093 4 C -0.009 4.009 5 N -0.332 5.332 6 C 0.126 3.874 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.292 3.708 16 O -0.390 6.390 17 C -0.099 4.099 18 N -0.269 5.269 19 C 0.015 3.985 20 C -0.133 4.133 21 C 0.314 3.686 22 O -0.366 6.366 23 O -0.342 6.342 24 C -0.211 4.211 25 C -0.183 4.183 26 C -0.160 4.160 27 H 0.123 0.877 28 H 0.136 0.864 29 H 0.113 0.887 30 H 0.092 0.908 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.180 0.820 37 H 0.125 0.875 38 H 0.120 0.880 39 H 0.266 0.734 40 H 0.105 0.895 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.789 -8.249 -17.174 20.982 hybrid contribution 0.577 1.402 0.156 1.524 sum -8.211 -6.847 -17.018 20.098 Atomic orbital electron populations 1.81209 1.13024 1.08689 1.09333 1.29110 0.95096 0.93069 0.92829 1.19919 0.81326 1.01540 1.06515 1.21292 0.82412 0.93941 1.03210 1.48208 1.04687 1.68809 1.11462 1.19340 0.92659 0.96573 0.78779 1.21442 1.36686 0.92405 1.06119 0.92408 1.24918 0.95320 0.98138 0.95607 1.69931 1.38285 1.34621 1.10337 0.86469 0.78114 0.85150 0.77828 1.19857 1.21001 1.20879 1.20173 0.88248 0.77906 0.84494 1.90716 1.13574 1.49944 1.84753 1.21990 0.95184 1.01238 0.91514 1.60023 1.17407 1.47668 1.01772 1.21845 0.94077 0.91842 0.90756 1.21338 0.97023 0.89637 1.05257 1.23209 0.89140 0.83187 0.73062 1.90774 1.17358 1.84781 1.43697 1.84518 1.45935 1.18176 1.85545 1.23705 0.97823 0.98895 1.00665 1.22868 0.97366 0.97149 1.00919 1.22992 1.01465 0.95706 0.95864 0.87676 0.86417 0.88748 0.90839 0.94764 0.93534 0.92721 0.92392 0.89050 0.81999 0.87477 0.87957 0.73425 0.89490 0.90974 0.89943 0.91164 0.89759 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.33 18.54 42.15 0.78 -5.55 16 2 C 0.22 2.53 15.43 -20.76 -0.32 2.20 16 3 C -0.05 -0.52 6.03 -29.52 -0.18 -0.70 16 4 C 0.12 1.52 5.17 -4.04 -0.02 1.49 16 5 N -0.60 -10.75 2.46 -175.06 -0.43 -11.18 16 6 C 0.25 5.78 5.16 -5.20 -0.03 5.76 16 7 C -0.53 -13.98 9.39 -34.44 -0.32 -14.31 16 8 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 11 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 C 0.51 9.22 7.71 -10.98 -0.08 9.13 16 16 O -0.52 -12.06 15.79 5.56 0.09 -11.97 16 17 C 0.03 0.42 4.33 -4.97 -0.02 0.40 16 18 N -0.64 -8.35 5.48 -100.40 -0.55 -8.90 16 19 C 0.11 1.04 0.35 -130.79 -0.05 0.99 16 20 C -0.09 -0.79 5.15 -27.89 -0.14 -0.93 16 21 C 0.47 5.08 8.09 36.00 0.29 5.37 16 22 O -0.48 -6.92 15.52 -18.75 -0.29 -7.21 16 23 O -0.53 -4.51 13.42 -39.27 -0.53 -5.04 16 24 C -0.17 -1.36 7.17 -25.92 -0.19 -1.55 16 25 C -0.15 -1.23 7.75 -25.92 -0.20 -1.43 16 26 C -0.12 -1.16 6.17 -25.92 -0.16 -1.32 16 27 H 0.11 0.88 7.22 -51.93 -0.38 0.50 16 28 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.09 1.31 8.07 -51.92 -0.42 0.89 16 30 H 0.07 0.76 6.44 -51.93 -0.33 0.43 16 31 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 32 H 0.05 1.27 7.42 -51.93 -0.39 0.88 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.06 0.63 5.92 -51.93 -0.31 0.33 16 35 H 0.09 0.95 5.65 -51.93 -0.29 0.65 16 36 H 0.36 5.16 7.61 -39.29 -0.30 4.86 16 37 H 0.11 0.62 8.06 -51.93 -0.42 0.20 16 38 H 0.10 0.75 6.62 -51.93 -0.34 0.41 16 39 H 0.41 2.06 9.10 45.56 0.41 2.48 16 40 H 0.09 0.55 8.04 -51.93 -0.42 0.13 16 41 H 0.07 0.62 6.69 -51.93 -0.35 0.27 16 42 H 0.08 0.77 7.73 -51.93 -0.40 0.37 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.08 0.99 8.07 -51.93 -0.42 0.57 16 45 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 379.93 15.07 5.73 5.73 Total: -1.00 -35.53 379.93 -6.58 -42.12 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.58 Total: 3.92 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -1.52 Total: 6.72 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: 0.54 Total: -50.39 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.73 Total: -24.22 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.53 -6.58 -42.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833760542.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.779 kcal (2) G-P(sol) polarization free energy of solvation -35.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds