Wall clock time and date at job start Tue Mar 31 2020 14:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47009 * 167.29060 * 3 2 1 5 5 N 1.46502 * 109.47419 * 179.97438 * 4 3 2 6 6 C 1.46495 * 119.99988 * 270.00303 * 5 4 3 7 7 C 1.50699 * 109.47088 * 269.99144 * 6 5 4 8 8 H 1.08003 * 120.00180 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00348 * 179.97438 * 7 6 5 10 10 N 1.31522 * 119.99673 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00161 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47169 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47208 * 120.00564 * 11 9 7 14 14 H 1.48500 * 109.47118 * 240.00128 * 11 9 7 15 15 C 1.34782 * 119.99748 * 89.99702 * 5 4 3 16 16 O 1.21281 * 119.99931 * 180.02562 * 15 5 4 17 17 C 1.50701 * 119.99678 * 0.02562 * 15 5 4 18 18 N 1.46901 * 109.46569 * 179.97438 * 17 15 5 19 19 C 1.46909 * 110.99840 * 179.58314 * 18 17 15 20 20 C 1.52995 * 112.84779 * 294.59865 * 19 18 17 21 21 C 1.50695 * 109.47288 * 294.33096 * 20 19 18 22 22 O 1.20829 * 119.99914 * 356.86901 * 21 20 19 23 23 O 1.34234 * 120.00517 * 176.86780 * 21 20 19 24 24 C 1.53774 * 113.68865 * 65.86577 * 19 18 17 25 25 C 1.53780 * 87.08289 * 89.12569 * 24 19 18 26 26 C 1.53781 * 87.08150 * 25.43234 * 25 24 19 27 27 H 1.08996 * 109.47669 * 47.28694 * 3 2 1 28 28 H 1.09007 * 109.47101 * 287.28638 * 3 2 1 29 29 H 1.09009 * 109.47340 * 59.99981 * 4 3 2 30 30 H 1.08994 * 109.47448 * 299.99962 * 4 3 2 31 31 H 1.08997 * 109.47763 * 29.99928 * 6 5 4 32 32 H 1.09006 * 109.47272 * 149.99802 * 6 5 4 33 33 H 0.96996 * 119.99821 * 179.97438 * 10 9 7 34 34 H 1.08995 * 109.47362 * 60.00195 * 17 15 5 35 35 H 1.08994 * 109.47232 * 299.99253 * 17 15 5 36 36 H 1.00897 * 111.00294 * 303.53290 * 18 17 15 37 37 H 1.08996 * 109.46902 * 174.33308 * 20 19 18 38 38 H 1.09002 * 109.47390 * 54.33251 * 20 19 18 39 39 H 0.96700 * 117.00594 * 179.97438 * 23 21 20 40 40 H 1.08996 * 113.61521 * 203.67666 * 24 19 18 41 41 H 1.09005 * 113.61675 * 334.58129 * 24 19 18 42 42 H 1.09001 * 113.61597 * 270.88457 * 25 24 19 43 43 H 1.09005 * 113.61395 * 139.97474 * 25 24 19 44 44 H 1.08993 * 113.61705 * 220.02232 * 26 25 24 45 45 H 1.08996 * 113.61744 * 89.11218 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.4080 -0.3174 5 7 4.5823 1.4089 -0.3168 6 6 5.3142 1.6886 0.9211 7 6 5.5645 3.1704 1.0327 8 1 5.2133 3.8373 0.2592 9 6 6.2412 3.6751 2.1229 10 7 6.6685 2.8632 3.0652 11 14 6.5509 5.5120 2.2616 12 1 5.9731 6.2020 1.0804 13 1 5.9121 6.0298 3.4982 14 1 8.0132 5.7647 2.3168 15 6 5.2568 1.1523 -1.4551 16 8 6.4696 1.1526 -1.4546 17 6 4.5038 0.8650 -2.7286 18 7 5.4590 0.6202 -3.8175 19 6 4.7594 0.3263 -5.0753 20 6 3.9681 -0.9822 -5.0233 21 6 4.9215 -2.1404 -4.8807 22 8 6.1139 -1.9452 -4.8832 23 8 4.4462 -3.3891 -4.7509 24 6 3.9511 1.5135 -5.6247 25 6 5.2274 1.9355 -6.3715 26 6 5.6509 0.4580 -6.3214 27 1 2.9717 -0.6962 -0.7550 28 1 2.9715 -0.3046 0.9813 29 1 2.7536 2.1050 0.4378 30 1 2.7539 1.7133 -1.2985 31 1 4.7250 1.3543 1.7750 32 1 6.2669 1.1592 0.9075 33 1 7.1448 3.2182 3.8320 34 1 3.8771 1.7203 -2.9810 35 1 3.8774 -0.0160 -2.5894 36 1 6.0891 1.4005 -3.9280 37 1 3.3932 -1.0959 -5.9422 38 1 3.2897 -0.9629 -4.1703 39 1 5.0963 -4.0995 -4.6628 40 1 3.1360 1.2184 -6.2855 41 1 3.6398 2.2223 -4.8574 42 1 5.8742 2.5949 -5.7927 43 1 5.0416 2.3023 -7.3810 44 1 6.7117 0.3145 -6.1164 45 1 5.3005 -0.1258 -7.1726 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833760542.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:47 Heat of formation + Delta-G solvation = -97.994173 kcal Electronic energy + Delta-G solvation = -28077.053214 eV Core-core repulsion = 24094.576274 eV Total energy + Delta-G solvation = -3982.476940 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.62485 -40.66512 -39.84624 -37.95587 -36.78060 -36.65164 -34.96765 -34.33884 -32.13319 -31.46510 -29.64637 -27.39108 -26.48908 -25.29222 -24.75063 -23.91708 -21.97093 -19.99436 -19.62146 -18.81970 -18.74335 -18.32170 -17.85257 -17.48328 -17.17625 -16.78730 -16.60712 -16.30235 -16.00544 -15.74312 -15.60951 -14.89171 -14.64777 -14.50293 -14.34458 -14.08783 -13.92262 -13.66079 -13.51618 -13.43985 -13.20676 -13.09900 -13.01428 -12.90309 -12.67422 -12.53576 -12.39104 -12.23593 -12.16740 -11.85700 -11.64618 -11.62519 -11.60182 -11.21028 -11.03190 -10.58703 -10.51962 -9.44444 -9.21553 -8.17219 -6.29521 1.39148 1.41870 1.52024 1.53176 1.71184 1.86566 1.94619 2.23878 2.34266 2.44671 3.03842 3.14647 3.28139 3.61312 3.69667 3.79861 3.86653 4.01029 4.06348 4.13889 4.32947 4.36392 4.42806 4.57241 4.62043 4.72552 4.82562 4.85615 4.87514 4.96208 5.07110 5.10176 5.12372 5.24253 5.25756 5.35429 5.42920 5.62878 5.87355 5.89273 6.12455 6.14511 6.36243 6.62980 6.78354 6.85028 7.25325 7.36300 7.57884 8.89737 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010829 B = 0.003834 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.136850 B = 7301.762010 C = 8464.845330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C 0.246 3.754 3 C -0.039 4.039 4 C 0.113 3.887 5 N -0.599 5.599 6 C 0.260 3.740 7 C -0.537 4.537 8 H 0.055 0.945 9 C 0.010 3.990 10 N -0.927 5.927 11 Si 0.958 3.042 12 H -0.266 1.266 13 H -0.273 1.273 14 H -0.287 1.287 15 C 0.499 3.501 16 O -0.579 6.579 17 C 0.049 3.951 18 N -0.660 5.660 19 C 0.102 3.898 20 C -0.095 4.095 21 C 0.473 3.527 22 O -0.530 6.530 23 O -0.524 6.524 24 C -0.155 4.155 25 C -0.146 4.146 26 C -0.124 4.124 27 H 0.134 0.866 28 H 0.117 0.883 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.034 0.966 32 H -0.001 1.001 33 H 0.265 0.735 34 H 0.086 0.914 35 H 0.124 0.876 36 H 0.345 0.655 37 H 0.142 0.858 38 H 0.121 0.879 39 H 0.420 0.580 40 H 0.115 0.885 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.084 0.916 44 H 0.050 0.950 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.920 -7.864 -19.337 23.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.164 5.164 2 C -0.071 4.071 3 C -0.080 4.080 4 C -0.011 4.011 5 N -0.330 5.330 6 C 0.139 3.861 7 C -0.575 4.575 8 H 0.073 0.927 9 C -0.189 4.189 10 N -0.567 5.567 11 Si 0.784 3.216 12 H -0.191 1.191 13 H -0.199 1.199 14 H -0.213 1.213 15 C 0.287 3.713 16 O -0.458 6.458 17 C -0.083 4.083 18 N -0.291 5.291 19 C 0.010 3.990 20 C -0.133 4.133 21 C 0.316 3.684 22 O -0.418 6.418 23 O -0.338 6.338 24 C -0.195 4.195 25 C -0.184 4.184 26 C -0.162 4.162 27 H 0.152 0.848 28 H 0.135 0.865 29 H 0.102 0.898 30 H 0.127 0.873 31 H 0.052 0.948 32 H 0.017 0.983 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.141 0.859 36 H 0.164 0.836 37 H 0.159 0.841 38 H 0.139 0.861 39 H 0.281 0.719 40 H 0.134 0.866 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.103 0.897 44 H 0.069 0.931 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.741 -8.162 -19.018 23.794 hybrid contribution 1.515 1.285 0.698 2.106 sum -10.226 -6.877 -18.320 22.079 Atomic orbital electron populations 1.81257 1.14261 1.10008 1.10864 1.29065 0.94821 0.91761 0.91450 1.19825 0.80283 1.00346 1.07565 1.21539 0.78980 0.95544 1.05067 1.48079 1.06756 1.68408 1.09777 1.18772 0.91377 0.94543 0.81429 1.21777 1.36206 0.93830 1.05729 0.92718 1.25741 0.95274 1.02400 0.95504 1.70041 1.39243 1.36480 1.10973 0.85500 0.77615 0.80186 0.78299 1.19066 1.19876 1.21281 1.21227 0.87854 0.76255 0.85928 1.90688 1.16657 1.52656 1.85809 1.21938 0.94530 1.03601 0.88226 1.60016 1.18224 1.47330 1.03568 1.21949 0.94449 0.93479 0.89084 1.21515 0.96502 0.87473 1.07766 1.23777 0.88888 0.84117 0.71635 1.90778 1.19468 1.85478 1.46056 1.84493 1.46301 1.18099 1.84918 1.23655 0.97808 0.97407 1.00601 1.22848 0.97683 0.96183 1.01672 1.23004 0.99623 0.96836 0.96691 0.84787 0.86458 0.89788 0.87291 0.94847 0.98250 0.92645 0.89670 0.85856 0.83558 0.84060 0.86129 0.71902 0.86633 0.91131 0.91711 0.89697 0.93130 0.88198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.66 18.54 20.01 0.37 -12.29 16 2 C 0.25 4.99 15.43 89.44 1.38 6.37 16 3 C -0.04 -0.68 6.03 28.79 0.17 -0.50 16 4 C 0.11 2.62 5.17 86.38 0.45 3.07 16 5 N -0.60 -21.19 2.46 -826.15 -2.03 -23.22 16 6 C 0.26 12.63 5.16 85.63 0.44 13.07 16 7 C -0.54 -28.95 9.39 25.60 0.24 -28.71 16 8 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 9 C 0.01 0.54 5.46 84.65 0.46 1.00 16 10 N -0.93 -54.24 13.29 21.45 0.28 -53.96 16 11 Si 0.96 43.73 29.54 68.60 2.03 45.76 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 13 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 14 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 15 C 0.50 18.04 7.71 87.66 0.68 18.72 16 16 O -0.58 -28.28 15.79 -3.03 -0.05 -28.33 16 17 C 0.05 1.10 4.33 85.56 0.37 1.47 16 18 N -0.66 -16.71 5.48 -471.54 -2.58 -19.29 16 19 C 0.10 1.73 0.35 4.05 0.00 1.73 16 20 C -0.09 -1.21 5.15 29.84 0.15 -1.05 16 21 C 0.47 9.16 8.09 71.23 0.58 9.74 16 22 O -0.53 -15.14 15.52 21.96 0.34 -14.80 16 23 O -0.52 -7.65 13.42 -51.46 -0.69 -8.34 16 24 C -0.16 -1.88 7.17 31.12 0.22 -1.66 16 25 C -0.15 -2.23 7.75 31.12 0.24 -1.98 16 26 C -0.12 -2.20 6.17 31.12 0.19 -2.01 16 27 H 0.13 1.64 7.22 -2.39 -0.02 1.62 16 28 H 0.12 2.17 8.14 -2.38 -0.02 2.15 16 29 H 0.08 2.17 8.07 -2.38 -0.02 2.15 16 30 H 0.11 1.79 6.44 -2.39 -0.02 1.77 16 31 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 32 H 0.00 -0.04 7.42 -2.38 -0.02 -0.05 16 33 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 34 H 0.09 1.51 5.92 -2.39 -0.01 1.49 16 35 H 0.12 2.00 5.65 -2.39 -0.01 1.98 16 36 H 0.34 10.19 7.61 -89.70 -0.68 9.50 16 37 H 0.14 0.87 8.06 -2.39 -0.02 0.85 16 38 H 0.12 1.12 6.62 -2.39 -0.02 1.10 16 39 H 0.42 3.57 9.10 -74.06 -0.67 2.89 16 40 H 0.12 0.80 8.04 -2.39 -0.02 0.78 16 41 H 0.07 0.92 6.69 -2.38 -0.02 0.90 16 42 H 0.06 1.21 7.73 -2.39 -0.02 1.19 16 43 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 44 H 0.05 1.24 8.07 -2.39 -0.02 1.22 16 45 H 0.10 1.39 8.10 -2.39 -0.02 1.37 16 Total: -1.00 -82.57 379.93 2.94 -79.63 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -0.31 Total: 15.58 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: 5.58 Total: 19.25 kcal Atomic # 7 Polarization: -104.79 SS G_CDS: -3.96 Total: -108.75 kcal Atomic # 8 Polarization: -51.07 SS G_CDS: -0.40 Total: -51.47 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -82.57 2.94 -79.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833760542.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.364 kcal (2) G-P(sol) polarization free energy of solvation -82.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds